EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000182196 (Gene tree)
Gene ID: 51329
Gene Symbol: ARL6IP4
Alias: SR-25|SRp25|SFRS20|SRrp37
Full Name: ADP ribosylation factor like GTPase 6 interacting protein 4
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Plus strand
Length: 2,854 bases
Position: chr12:122,980,060-122,982,913
Accession: 18076
RBP type: canonical RBP
Summary: (ADP Ribosylation Factor Like GTPase 6 Interacting Protein 4) is a Protein Coding gene.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000396365	SR-25	PF10500.9	3.7e-103	1	1
ENSP00000414847	SR-25	PF10500.9	2.2e-102	1	1
ENSP00000313422	SR-25	PF10500.9	9.4e-102	1	1
ENSP00000396723	SR-25	PF10500.9	5.7e-100	1	1
ENSP00000406036	SR-25	PF10500.9	2.9e-96	1	1
ENSP00000442718	SR-25	PF10500.9	4.9e-96	1	1
ENSP00000441406	SR-25	PF10500.9	1.6e-90	1	1
ENSP00000376230	SR-25	PF10500.9	2.5e-84	1	1
ENSP00000391598	SR-25	PF10500.9	5.1e-84	1	1
ENSP00000442200	SR-25	PF10500.9	7.9e-68	1	1
ENSP00000350532	SR-25	PF10500.9	1.4e-57	1	2
ENSP00000350532	SR-25	PF10500.9	1.4e-57	2	2
ENSP00000413132	SR-25	PF10500.9	2e-50	1	2
ENSP00000413132	SR-25	PF10500.9	2e-50	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
22681889	The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts	4SURIC & HEK293	2012 May	Baltz AG	DOI: 10.1016/j.molcel.2012.05.021
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
22658674	Insights into RNA biology from an atlas of mammalian mRNA-binding proteins	RIC & Hela	2012 May 31	Castello A	DOI: 10.1016/j.cell.2012.04.031
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30352994	Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture	RIC & Jurkat	2018 Oct 23	Perez-Perri JI	DOI:10.1038/s41467-018-06557-8

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000543566	ARL6IP4-220	1591	-	ENSP00000442718	402 (aa)	-	Q66PJ3
ENST00000357866	ARL6IP4-202	546	-	ENSP00000350532	181 (aa)	-	A0A0C4DH18
ENST00000392433	ARL6IP4-203	1370	-	-	- (aa)	-	-
ENST00000454885	ARL6IP4-211	1318	-	ENSP00000396723	226 (aa)	-	Q66PJ3
ENST00000542099	ARL6IP4-219	1119	-	ENSP00000442200	307 (aa)	-	F5H7X4
ENST00000539770	ARL6IP4-216	1295	-	ENSP00000438969	215 (aa)	-	A0A0A0MTG7
ENST00000426960	ARL6IP4-207	910	-	ENSP00000406036	218 (aa)	-	A0A0C4DG62
ENST00000392435	ARL6IP4-204	1339	-	ENSP00000376230	399 (aa)	-	Q66PJ3
ENST00000439686	ARL6IP4-208	796	-	ENSP00000396365	229 (aa)	-	F8WCT1
ENST00000412505	ARL6IP4-205	818	-	ENSP00000413132	170 (aa)	-	F8WEP2
ENST00000539576	ARL6IP4-215	1684	-	-	- (aa)	-	-
ENST00000442210	ARL6IP4-209	716	-	-	- (aa)	-	-
ENST00000536502	ARL6IP4-214	1273	-	-	- (aa)	-	-
ENST00000453766	ARL6IP4-210	1491	-	ENSP00000414847	413 (aa)	-	Q66PJ3
ENST00000540382	ARL6IP4-217	1677	-	-	- (aa)	-	-
ENST00000315580	ARL6IP4-201	1644	-	ENSP00000313422	421 (aa)	-	Q66PJ3
ENST00000456762	ARL6IP4-212	796	-	ENSP00000391598	216 (aa)	-	H7BZV4
ENST00000540708	ARL6IP4-218	1782	-	-	- (aa)	-	-
ENST00000413381	ARL6IP4-206	799	-	ENSP00000441406	211 (aa)	-	F5GYV5
ENST00000536073	ARL6IP4-213	562	-	-	- (aa)	-	-

Gene Model

Click here to download ENSG00000182196's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000182196's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000182196	ARL6IP4	91	71.101	ENSAMEG00000015055	-	100	70.990	Ailuropoda_melanoleuca
ENSG00000182196	ARL6IP4	100	90.393	ENSANAG00000035845	ARL6IP4	100	90.393	Aotus_nancymaae
ENSG00000182196	ARL6IP4	100	86.207	ENSBTAG00000001594	ARL6IP4	100	87.069	Bos_taurus
ENSG00000182196	ARL6IP4	100	89.520	ENSCJAG00000016476	-	100	89.520	Callithrix_jacchus
ENSG00000182196	ARL6IP4	100	81.897	ENSCAFG00000007665	ARL6IP4	100	81.897	Canis_familiaris
ENSG00000182196	ARL6IP4	100	80.519	ENSCAFG00020016288	-	100	80.519	Canis_lupus_dingo
ENSG00000182196	ARL6IP4	100	84.348	ENSCHIG00000014369	-	100	84.348	Capra_hircus
ENSG00000182196	ARL6IP4	100	93.886	ENSTSYG00000030992	ARL6IP4	100	93.886	Carlito_syrichta
ENSG00000182196	ARL6IP4	100	82.547	ENSCPOG00000031539	-	87	85.500	Cavia_porcellus
ENSG00000182196	ARL6IP4	100	90.826	ENSCCAG00000037235	ARL6IP4	100	90.826	Cebus_capucinus
ENSG00000182196	ARL6IP4	100	92.576	ENSCATG00000000284	-	99	81.731	Cercocebus_atys
ENSG00000182196	ARL6IP4	84	92.228	ENSCATG00000004525	-	86	92.228	Cercocebus_atys
ENSG00000182196	ARL6IP4	99	86.218	ENSCSAG00000002076	ARL6IP4	100	88.089	Chlorocebus_sabaeus
ENSG00000182196	ARL6IP4	84	94.737	ENSCANG00000008517	ARL6IP4	81	90.291	Colobus_angolensis_palliatus
ENSG00000182196	ARL6IP4	85	73.846	ENSCGRG00001024174	Arl6ip4	86	75.377	Cricetulus_griseus_chok1gshd
ENSG00000182196	ARL6IP4	85	73.846	ENSCGRG00000002843	Arl6ip4	86	75.377	Cricetulus_griseus_crigri
ENSG00000182196	ARL6IP4	81	86.486	ENSDNOG00000044908	-	94	87.234	Dasypus_novemcinctus
ENSG00000182196	ARL6IP4	80	88.764	ENSDORG00000023896	Arl6ip4	100	87.640	Dipodomys_ordii
ENSG00000182196	ARL6IP4	83	84.699	ENSETEG00000008410	ARL6IP4	100	71.893	Echinops_telfairi
ENSG00000182196	ARL6IP4	100	83.550	ENSEASG00005012544	-	100	86.147	Equus_asinus_asinus
ENSG00000182196	ARL6IP4	100	83.117	ENSECAG00000023197	ARL6IP4	100	85.714	Equus_caballus
ENSG00000182196	ARL6IP4	77	86.585	ENSEEUG00000002462	-	83	69.485	Erinaceus_europaeus
ENSG00000182196	ARL6IP4	100	83.621	ENSFCAG00000006132	-	100	83.621	Felis_catus
ENSG00000182196	ARL6IP4	91	81.818	ENSFDAG00000009535	-	86	85.000	Fukomys_damarensis
ENSG00000182196	ARL6IP4	100	97.625	ENSGGOG00000042717	ARL6IP4	100	97.625	Gorilla_gorilla
ENSG00000182196	ARL6IP4	100	86.087	ENSHGLG00000011726	-	100	87.826	Heterocephalus_glaber_female
ENSG00000182196	ARL6IP4	100	86.087	ENSHGLG00100018434	-	100	87.826	Heterocephalus_glaber_male
ENSG00000182196	ARL6IP4	100	88.646	ENSSTOG00000010405	-	100	88.646	Ictidomys_tridecemlineatus
ENSG00000182196	ARL6IP4	90	81.818	ENSJJAG00000019114	Arl6ip4	86	82.587	Jaculus_jaculus
ENSG00000182196	ARL6IP4	100	86.522	ENSLAFG00000005314	-	100	88.696	Loxodonta_africana
ENSG00000182196	ARL6IP4	81	95.109	ENSMFAG00000034524	ARL6IP4	100	64.423	Macaca_fascicularis
ENSG00000182196	ARL6IP4	94	87.324	ENSMMUG00000015930	ARL6IP4	90	91.795	Macaca_mulatta
ENSG00000182196	ARL6IP4	100	92.576	ENSMNEG00000015953	ARL6IP4	100	92.576	Macaca_nemestrina
ENSG00000182196	ARL6IP4	86	64.550	ENSMGAG00000003506	ARL6IP4	55	81.373	Meleagris_gallopavo
ENSG00000182196	ARL6IP4	87	72.864	ENSMAUG00000018929	Arl6ip4	86	74.742	Mesocricetus_auratus
ENSG00000182196	ARL6IP4	100	91.743	ENSMICG00000032330	-	100	91.743	Microcebus_murinus
ENSG00000182196	ARL6IP4	85	84.184	ENSMOCG00000001258	Arl6ip4	86	83.500	Microtus_ochrogaster
ENSG00000182196	ARL6IP4	91	79.621	MGP_CAROLIEiJ_G0027744	Arl6ip4	86	77.889	Mus_caroli
ENSG00000182196	ARL6IP4	91	79.147	ENSMUSG00000029404	Arl6ip4	86	79.703	Mus_musculus
ENSG00000182196	ARL6IP4	91	80.288	MGP_PahariEiJ_G0024324	Arl6ip4	98	78.392	Mus_pahari
ENSG00000182196	ARL6IP4	91	79.621	MGP_SPRETEiJ_G0028742	Arl6ip4	86	80.198	Mus_spretus
ENSG00000182196	ARL6IP4	100	83.750	ENSMPUG00000001705	ARL6IP4	100	81.973	Mustela_putorius_furo
ENSG00000182196	ARL6IP4	100	82.969	ENSNGAG00000023492	Arl6ip4	100	82.969	Nannospalax_galili
ENSG00000182196	ARL6IP4	100	89.868	ENSNLEG00000002378	-	100	88.312	Nomascus_leucogenys
ENSG00000182196	ARL6IP4	100	82.328	ENSODEG00000010162	-	100	82.328	Octodon_degus
ENSG00000182196	ARL6IP4	100	55.963	ENSODEG00000015865	-	51	67.290	Octodon_degus
ENSG00000182196	ARL6IP4	99	80.769	ENSOGAG00000015951	-	100	77.778	Otolemur_garnettii
ENSG00000182196	ARL6IP4	87	80.288	ENSOARG00000007010	ARL6IP4	100	74.441	Ovis_aries
ENSG00000182196	ARL6IP4	100	97.862	ENSPPAG00000028900	ARL6IP4	100	97.862	Pan_paniscus
ENSG00000182196	ARL6IP4	100	84.052	ENSPPRG00000003154	-	100	84.052	Panthera_pardus
ENSG00000182196	ARL6IP4	100	82.906	ENSPTIG00000020573	-	100	82.906	Panthera_tigris_altaica
ENSG00000182196	ARL6IP4	100	97.862	ENSPTRG00000005590	ARL6IP4	100	97.862	Pan_troglodytes
ENSG00000182196	ARL6IP4	100	89.868	ENSPANG00000003696	-	99	79.756	Papio_anubis
ENSG00000182196	ARL6IP4	84	82.812	ENSPANG00000029614	-	85	86.458	Papio_anubis
ENSG00000182196	ARL6IP4	91	77.885	ENSPEMG00000008921	Arl6ip4	86	77.889	Peromyscus_maniculatus_bairdii
ENSG00000182196	ARL6IP4	81	59.429	ENSPCIG00000003197	-	63	64.162	Phascolarctos_cinereus
ENSG00000182196	ARL6IP4	100	97.706	ENSPPYG00000005079	ARL6IP4	100	95.522	Pongo_abelii
ENSG00000182196	ARL6IP4	100	87.773	ENSPCOG00000018734	-	87	88.945	Propithecus_coquereli
ENSG00000182196	ARL6IP4	85	81.818	ENSRNOG00000001080	Arl6ip4	87	82.178	Rattus_norvegicus
ENSG00000182196	ARL6IP4	99	86.601	ENSRBIG00000035918	ARL6IP4	91	85.976	Rhinopithecus_bieti
ENSG00000182196	ARL6IP4	100	78.761	ENSRROG00000028559	-	85	83.505	Rhinopithecus_roxellana
ENSG00000182196	ARL6IP4	68	97.030	ENSRROG00000032973	-	88	97.030	Rhinopithecus_roxellana
ENSG00000182196	ARL6IP4	100	86.207	ENSSBOG00000033244	-	100	87.500	Saimiri_boliviensis_boliviensis
ENSG00000182196	ARL6IP4	91	61.435	ENSSHAG00000013731	-	76	67.925	Sarcophilus_harrisii
ENSG00000182196	ARL6IP4	100	81.513	ENSSSCG00000009782	-	100	84.874	Sus_scrofa
ENSG00000182196	ARL6IP4	91	82.524	ENSTBEG00000000080	ARL6IP4	88	79.070	Tupaia_belangeri
ENSG00000182196	ARL6IP4	100	83.550	ENSUAMG00000000545	-	100	84.416	Ursus_americanus
ENSG00000182196	ARL6IP4	100	83.117	ENSUMAG00000004427	-	100	83.983	Ursus_maritimus
ENSG00000182196	ARL6IP4	100	80.952	ENSVVUG00000028080	-	100	80.952	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	22658674.22681889.	HDA	Function
GO:0005515	protein binding	20098747.	IPI	Function
GO:0005634	nucleus	10708573.	TAS	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016607	nuclear speck	-	IEA	Component