EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000183808 (Gene tree)
Gene ID
389677
Gene Symbol
RBM12B
Alias
N
Full Name
RNA binding motif protein 12B
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
11,662 bases
Position
chr8:93,729,356-93,741,017
Accession
32310
RBP type
canonical RBP
Summary
(RNA Binding Motif Protein 12B) is a Protein Coding gene. Diseases associated with RBM12B include Interleukin-7 Receptor Alpha Deficiency. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and nucleotide binding. An important paralog of this gene is RBM12.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000427729RRM_1PF00076.226.5e-2712
ENSP00000427729RRM_1PF00076.226.5e-2722
ENSP00000487257RRM_1PF00076.226.5e-2712
ENSP00000487257RRM_1PF00076.226.5e-2722
ENSP00000382239RRM_1PF00076.221.4e-2612
ENSP00000382239RRM_1PF00076.221.4e-2622
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
20926767Late-gestational systemic hypoxia leads to a similar early gene response in mouse placenta and developing brain.Am J Physiol Regul Integr Comp Physiol2010 DecTrollmann Rdoi: 10.1152/ajpregu.00697.2009
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000521947RBM12B-207452-ENSP0000043046682 (aa)-E5RJW8
ENST00000399300RBM12B-2017269XM_005250915ENSP000003822391001 (aa)XP_005250972Q8IXT5
ENST00000520961RBM12B-206507--- (aa)--
ENST00000518597RBM12B-203579-ENSP00000428269143 (aa)-E5RJ83
ENST00000520560RBM12B-205588-ENSP00000429807122 (aa)-E5RHG1
ENST00000627241RBM12B-2082646-ENSP00000487257881 (aa)-B9ZVT1
ENST00000519109RBM12B-204615-ENSP00000430474149 (aa)-E5RJV8
ENST00000517700RBM12B-2026001-ENSP00000427729881 (aa)-B9ZVT1
Gene Model
Click here to download ENSG00000183808's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000183808Blood Pressure5.67336886020762E-517903302
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000183808rs3133974893734470?Menarche (age at onset)30595370EFO_0004703
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000183808's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000183808RBM12B9974.074ENSG00000244462RBM126572.414
ENSG00000183808RBM12B9340.000ENSG00000126945HNRNPH27830.435
ENSG00000183808RBM12B9340.000ENSG00000169045HNRNPH18637.975
ENSG00000183808RBM12B9436.250ENSG00000169813HNRNPF9634.783
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000183808RBM12B9872.500ENSAPOG00000013963rbm12b9538.402Acanthochromis_polyacanthus
ENSG00000183808RBM12B100100.000ENSAMEG00000007134RBM12B10085.131Ailuropoda_melanoleuca
ENSG00000183808RBM12B9976.250ENSACIG00000014943rbm12b9940.127Amphilophus_citrinellus
ENSG00000183808RBM12B9872.500ENSAOCG00000024270rbm12b10038.849Amphiprion_ocellaris
ENSG00000183808RBM12B9872.500ENSAPEG00000022079rbm12b9643.515Amphiprion_percula
ENSG00000183808RBM12B9877.500ENSATEG00000004578rbm12b8545.455Anabas_testudineus
ENSG00000183808RBM12B9847.500ENSATEG00000001886zgc:1532157647.500Anabas_testudineus
ENSG00000183808RBM12B10086.585ENSAPLG00000002020RBM12B10062.667Anas_platyrhynchos
ENSG00000183808RBM12B9870.000ENSACAG00000003463RBM12B10039.028Anolis_carolinensis
ENSG00000183808RBM12B100100.000ENSANAG00000034015RBM12B10092.736Aotus_nancymaae
ENSG00000183808RBM12B9972.840ENSACLG00000005578rbm12b8746.753Astatotilapia_calliptera
ENSG00000183808RBM12B9975.309ENSACLG00000005575rbm12b9046.753Astatotilapia_calliptera
ENSG00000183808RBM12B9858.750ENSAMXG00000020853zgc:1532156856.977Astyanax_mexicanus
ENSG00000183808RBM12B9976.543ENSAMXG00000041973rbm12b9142.857Astyanax_mexicanus
ENSG00000183808RBM12B10098.780ENSBTAG00000013408RBM12B10086.168Bos_taurus
ENSG00000183808RBM12B100100.000ENSCAFG00000009109RBM12B10086.613Canis_familiaris
ENSG00000183808RBM12B100100.000ENSCAFG00020012203RBM12B10088.309Canis_lupus_dingo
ENSG00000183808RBM12B10098.780ENSCHIG00000006790RBM12B8985.312Capra_hircus
ENSG00000183808RBM12B10097.561ENSTSYG00000012515RBM12B10086.824Carlito_syrichta
ENSG00000183808RBM12B10097.561ENSCAPG00000003543RBM12B10082.318Cavia_aperea
ENSG00000183808RBM12B10097.561ENSCPOG00000007815RBM12B10082.318Cavia_porcellus
ENSG00000183808RBM12B100100.000ENSCATG00000030769RBM12B10094.337Cercocebus_atys
ENSG00000183808RBM12B10098.780ENSCLAG00000017617RBM12B10082.717Chinchilla_lanigera
ENSG00000183808RBM12B100100.000ENSCSAG00000018559RBM12B10099.101Chlorocebus_sabaeus
ENSG00000183808RBM12B10093.902ENSCHOG00000008934RBM12B10083.283Choloepus_hoffmanni
ENSG00000183808RBM12B10080.488ENSCPBG00000003061RBM12B10062.937Chrysemys_picta_bellii
ENSG00000183808RBM12B100100.000ENSCANG00000030379RBM12B10094.558Colobus_angolensis_palliatus
ENSG00000183808RBM12B10096.341ENSCGRG00001008710-9776.531Cricetulus_griseus_chok1gshd
ENSG00000183808RBM12B9872.500ENSCSEG00000004610rbm12b8939.563Cynoglossus_semilaevis
ENSG00000183808RBM12B9875.000ENSCVAG00000011047rbm12b8646.753Cyprinodon_variegatus
ENSG00000183808RBM12B9951.852ENSCVAG00000009259-9933.190Cyprinodon_variegatus
ENSG00000183808RBM12B9878.750ENSDARG00000079717rbm12b8241.558Danio_rerio
ENSG00000183808RBM12B10093.902ENSDNOG00000041608RBM12B10082.133Dasypus_novemcinctus
ENSG00000183808RBM12B10097.561ENSDORG00000024034-10080.449Dipodomys_ordii
ENSG00000183808RBM12B9990.123ENSETEG00000013005-8472.913Echinops_telfairi
ENSG00000183808RBM12B7864.062ENSEBUG00000009015-7130.531Eptatretus_burgeri
ENSG00000183808RBM12B100100.000ENSEASG00005016297RBM12B10087.982Equus_asinus_asinus
ENSG00000183808RBM12B100100.000ENSECAG00000017870RBM12B10086.214Equus_caballus
ENSG00000183808RBM12B10098.780ENSFCAG00000029274RBM12B10088.309Felis_catus
ENSG00000183808RBM12B10085.366ENSFALG00000014893RBM12B10063.309Ficedula_albicollis
ENSG00000183808RBM12B10098.780ENSFDAG00000005576RBM12B9781.138Fukomys_damarensis
ENSG00000183808RBM12B9954.321ENSFHEG00000014539zgc:1532159630.544Fundulus_heteroclitus
ENSG00000183808RBM12B9972.840ENSFHEG00000016425rbm12b8648.052Fundulus_heteroclitus
ENSG00000183808RBM12B9875.000ENSGMOG00000013467rbm12b9045.333Gadus_morhua
ENSG00000183808RBM12B10084.146ENSGALG00000035129RBM12B10061.333Gallus_gallus
ENSG00000183808RBM12B9876.250ENSGAFG00000007224rbm12b8648.052Gambusia_affinis
ENSG00000183808RBM12B9975.000ENSGACG00000008682rbm12b8544.156Gasterosteus_aculeatus
ENSG00000183808RBM12B10080.488ENSGAGG00000009774RBM12B10062.069Gopherus_agassizii
ENSG00000183808RBM12B100100.000ENSGGOG00000011909RBM12B10096.716Gorilla_gorilla
ENSG00000183808RBM12B9845.000ENSHBUG00000016150zgc:1532157944.048Haplochromis_burtoni
ENSG00000183808RBM12B9974.074ENSHBUG00000016227rbm12b8446.753Haplochromis_burtoni
ENSG00000183808RBM12B10098.780ENSHGLG00000009063RBM12B10082.435Heterocephalus_glaber_female
ENSG00000183808RBM12B10098.780ENSHGLG00100021324RBM12B10082.435Heterocephalus_glaber_male
ENSG00000183808RBM12B9875.000ENSHCOG00000014952rbm12b10049.351Hippocampus_comes
ENSG00000183808RBM12B9974.074ENSIPUG00000001167RBM12B8746.067Ictalurus_punctatus
ENSG00000183808RBM12B9551.282ENSIPUG00000019731zgc:1532159930.571Ictalurus_punctatus
ENSG00000183808RBM12B10098.780ENSSTOG00000027445RBM12B10085.585Ictidomys_tridecemlineatus
ENSG00000183808RBM12B10095.122ENSJJAG00000004165-10079.910Jaculus_jaculus
ENSG00000183808RBM12B9975.309ENSKMAG00000013704rbm12b8347.368Kryptolebias_marmoratus
ENSG00000183808RBM12B9851.250ENSKMAG00000004958zgc:1532159930.382Kryptolebias_marmoratus
ENSG00000183808RBM12B9977.778ENSKMAG00000013715rbm12b8647.368Kryptolebias_marmoratus
ENSG00000183808RBM12B9852.500ENSLBEG00000002597zgc:1532159930.291Labrus_bergylta
ENSG00000183808RBM12B10078.049ENSLACG00000007177RBM12B10052.206Latimeria_chalumnae
ENSG00000183808RBM12B9875.000ENSLOCG00000018344rbm12b8650.649Lepisosteus_oculatus
ENSG00000183808RBM12B10095.122ENSLAFG00000029949RBM12B10079.365Loxodonta_africana
ENSG00000183808RBM12B100100.000ENSMFAG00000045430RBM12B10095.011Macaca_fascicularis
ENSG00000183808RBM12B100100.000ENSMMUG00000005558RBM12B10099.432Macaca_mulatta
ENSG00000183808RBM12B100100.000ENSMNEG00000041292RBM12B10095.011Macaca_nemestrina
ENSG00000183808RBM12B100100.000ENSMLEG00000037288RBM12B10096.485Mandrillus_leucophaeus
ENSG00000183808RBM12B9878.750ENSMAMG00000011998rbm12b10042.970Mastacembelus_armatus
ENSG00000183808RBM12B9975.309ENSMZEG00005015005rbm12b9246.753Maylandia_zebra
ENSG00000183808RBM12B9971.605ENSMZEG00005014845rbm12b9145.946Maylandia_zebra
ENSG00000183808RBM12B9845.000ENSMZEG00005005435zgc:1532157944.048Maylandia_zebra
ENSG00000183808RBM12B10085.366ENSMGAG00000011985RBM12B9958.398Meleagris_gallopavo
ENSG00000183808RBM12B10096.341ENSMAUG00000021752-10077.098Mesocricetus_auratus
ENSG00000183808RBM12B99100.000ENSMICG00000036969RBM12B10088.082Microcebus_murinus
ENSG00000183808RBM12B10093.902ENSMOCG00000005603-10074.745Microtus_ochrogaster
ENSG00000183808RBM12B9848.750ENSMMOG00000003372zgc:1532157736.585Mola_mola
ENSG00000183808RBM12B9670.513ENSMMOG00000002404rbm12b9447.368Mola_mola
ENSG00000183808RBM12B10090.244ENSMODG00000007436RBM12B9867.615Monodelphis_domestica
ENSG00000183808RBM12B9975.309ENSMALG00000012059rbm12b8850.000Monopterus_albus
ENSG00000183808RBM12B10095.122ENSMUSG00000046667Rbm12b110072.614Mus_musculus
ENSG00000183808RBM12B10095.122ENSMUSG00000052137Rbm12b210071.154Mus_musculus
ENSG00000183808RBM12B10095.122MGP_SPRETEiJ_G0026765-10070.550Mus_spretus
ENSG00000183808RBM12B10095.122MGP_SPRETEiJ_G0026766-10073.894Mus_spretus
ENSG00000183808RBM12B100100.000ENSMPUG00000018637RBM12B10086.026Mustela_putorius_furo
ENSG00000183808RBM12B9996.296ENSMLUG00000002359RBM12B10076.723Myotis_lucifugus
ENSG00000183808RBM12B10096.341ENSNGAG00000002801-10079.526Nannospalax_galili
ENSG00000183808RBM12B9975.309ENSNBRG00000015057rbm12b9246.753Neolamprologus_brichardi
ENSG00000183808RBM12B100100.000ENSNLEG00000032050RBM12B10097.398Nomascus_leucogenys
ENSG00000183808RBM12B10098.780ENSODEG00000019204RBM12B10081.019Octodon_degus
ENSG00000183808RBM12B9975.309ENSONIG00000020612rbm12b9246.753Oreochromis_niloticus
ENSG00000183808RBM12B10086.585ENSOANG00000015735-9768.000Ornithorhynchus_anatinus
ENSG00000183808RBM12B10095.122ENSOCUG00000010353RBM12B10085.358Oryctolagus_cuniculus
ENSG00000183808RBM12B9875.000ENSORLG00000008228rbm12b8348.052Oryzias_latipes
ENSG00000183808RBM12B9875.000ENSORLG00020013619rbm12b8348.052Oryzias_latipes_hni
ENSG00000183808RBM12B9875.000ENSORLG00015019999rbm12b8348.052Oryzias_latipes_hsok
ENSG00000183808RBM12B9875.000ENSOMEG00000022523rbm12b8349.351Oryzias_melastigma
ENSG00000183808RBM12B10098.780ENSOGAG00000002979RBM12B10088.511Otolemur_garnettii
ENSG00000183808RBM12B10098.780ENSPTIG00000020071RBM12B10088.309Panthera_tigris_altaica
ENSG00000183808RBM12B100100.000ENSPTRG00000020420RBM12B10098.865Pan_troglodytes
ENSG00000183808RBM12B100100.000ENSPANG00000035535RBM12B10096.712Papio_anubis
ENSG00000183808RBM12B9556.410ENSPKIG00000014851zgc:1532159932.432Paramormyrops_kingsleyae
ENSG00000183808RBM12B9971.250ENSPKIG00000018719rbm12b8548.052Paramormyrops_kingsleyae
ENSG00000183808RBM12B10081.707ENSPSIG00000001348RBM12B10061.224Pelodiscus_sinensis
ENSG00000183808RBM12B9967.901ENSPMGG00000012348-9737.500Periophthalmus_magnuspinnatus
ENSG00000183808RBM12B10096.341ENSPEMG00000008279-10078.571Peromyscus_maniculatus_bairdii
ENSG00000183808RBM12B10090.244ENSPCIG00000008556RBM12B10067.647Phascolarctos_cinereus
ENSG00000183808RBM12B9876.250ENSPFOG00000020937rbm12b8644.898Poecilia_formosa
ENSG00000183808RBM12B9852.500ENSPFOG00000017451zgc:1532156651.190Poecilia_formosa
ENSG00000183808RBM12B9975.309ENSPLAG00000018782rbm12b8944.898Poecilia_latipinna
ENSG00000183808RBM12B9975.309ENSPMEG00000011418rbm12b8944.898Poecilia_mexicana
ENSG00000183808RBM12B9951.852ENSPREG00000018608zgc:1532159930.620Poecilia_reticulata
ENSG00000183808RBM12B9876.250ENSPREG00000020770rbm12b8944.898Poecilia_reticulata
ENSG00000183808RBM12B100100.000ENSPPYG00000018745RBM12B10098.701Pongo_abelii
ENSG00000183808RBM12B9998.765ENSPCOG00000023546RBM12B10090.919Propithecus_coquereli
ENSG00000183808RBM12B10097.561ENSPVAG00000011803RBM12B10079.820Pteropus_vampyrus
ENSG00000183808RBM12B9975.309ENSPNYG00000016696rbm12b9246.753Pundamilia_nyererei
ENSG00000183808RBM12B9956.790ENSPNAG00000025628zgc:1532159931.306Pygocentrus_nattereri
ENSG00000183808RBM12B9979.012ENSPNAG00000008126rbm12b8449.351Pygocentrus_nattereri
ENSG00000183808RBM12B10092.683ENSRNOG00000055292LOC67908710071.229Rattus_norvegicus
ENSG00000183808RBM12B10092.683ENSRNOG00000016330Rbm12b10071.219Rattus_norvegicus
ENSG00000183808RBM12B100100.000ENSRBIG00000035046RBM12B10097.049Rhinopithecus_bieti
ENSG00000183808RBM12B100100.000ENSRROG00000023660RBM12B10092.744Rhinopithecus_roxellana
ENSG00000183808RBM12B100100.000ENSSBOG00000027592RBM12B10095.130Saimiri_boliviensis_boliviensis
ENSG00000183808RBM12B10090.244ENSSHAG00000015335RBM12B10067.826Sarcophilus_harrisii
ENSG00000183808RBM12B9872.500ENSSFOG00015001584rbm12b8646.753Scleropages_formosus
ENSG00000183808RBM12B9960.494ENSSFOG00015009427zgc:1532159935.029Scleropages_formosus
ENSG00000183808RBM12B9875.000ENSSMAG00000019708rbm12b8648.052Scophthalmus_maximus
ENSG00000183808RBM12B9978.750ENSSDUG00000006856rbm12b8648.052Seriola_dumerili
ENSG00000183808RBM12B9978.750ENSSLDG00000016156rbm12b8648.052Seriola_lalandi_dorsalis
ENSG00000183808RBM12B9850.000ENSSLDG00000013581zgc:1532157650.000Seriola_lalandi_dorsalis
ENSG00000183808RBM12B10090.244ENSSARG00000011845-8678.754Sorex_araneus
ENSG00000183808RBM12B9881.250ENSSPUG00000016954RBM12B9156.262Sphenodon_punctatus
ENSG00000183808RBM12B9873.750ENSSPAG00000006774rbm12b9048.052Stegastes_partitus
ENSG00000183808RBM12B10098.780ENSSSCG00000006110RBM12B10086.014Sus_scrofa
ENSG00000183808RBM12B10085.366ENSTGUG00000011860RBM12B10055.837Taeniopygia_guttata
ENSG00000183808RBM12B10071.951ENSTRUG00000013738rbm12b8648.052Takifugu_rubripes
ENSG00000183808RBM12B10095.122ENSTBEG00000000449RBM12B8286.164Tupaia_belangeri
ENSG00000183808RBM12B100100.000ENSUAMG00000023639RBM12B10088.788Ursus_americanus
ENSG00000183808RBM12B100100.000ENSUMAG00000016008RBM12B10080.517Ursus_maritimus
ENSG00000183808RBM12B10097.561ENSVPAG00000001080RBM12B9093.814Vicugna_pacos
ENSG00000183808RBM12B100100.000ENSVVUG00000002694RBM12B10088.649Vulpes_vulpes
ENSG00000183808RBM12B9644.304ENSXETG00000025920-9730.453Xenopus_tropicalis
ENSG00000183808RBM12B10082.927ENSXETG00000014694rbm12b10046.545Xenopus_tropicalis
ENSG00000183808RBM12B9959.259ENSXETG00000014696rbm12b9038.490Xenopus_tropicalis
ENSG00000183808RBM12B9976.543ENSXCOG00000019735-9940.308Xiphophorus_couchianus
ENSG00000183808RBM12B7454.098ENSXMAG00000013169-9345.570Xiphophorus_maculatus
ENSG00000183808RBM12B9877.500ENSXMAG00000014213rbm12b8944.898Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding21078624.IPIFunction

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