EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000184110 (Gene tree)
Gene ID
8663
Gene Symbol
EIF3C
Alias
eIF3-p110|eIF3c|EIF3S8
Full Name
eukaryotic translation initiation factor 3 subunit C
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
47,173 bases
Position
chr16:28,688,558-28,735,730
Accession
3279
RBP type
canonical RBP
Summary
(Eukaryotic Translation Initiation Factor 3 Subunit C) is a Protein Coding gene. Among its related pathways are Apoptotic Pathways in Synovial Fibroblasts and Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S. Gene Ontology (GO) annotations related to this gene include translation initiation factor activity. An important paralog of this gene is EIF3CL.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000332604eIF-3c_NPF05470.128.4e-27311
ENSP00000378953eIF-3c_NPF05470.128.4e-27311
ENSP00000457418eIF-3c_NPF05470.128.4e-27311
ENSP00000457963eIF-3c_NPF05470.128.4e-27311
ENSP00000456416eIF-3c_NPF05470.127e-26411
ENSP00000455278eIF-3c_NPF05470.127e-5211
ENSP00000455277eIF-3c_NPF05470.121.4e-4911
ENSP00000457389eIF-3c_NPF05470.121.7e-3211
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
23766293Two RNA-binding motifs in eIF3 direct HCV IRES-dependent translation.Nucleic Acids Res2013 AugSun Cdoi: 10.1093/nar/gkt510
22016036The interaction between human initiation factor eIF3 subunit c and heat-shock protein 90: a necessary factor for translation mediated by the hepatitis C virus internal ribosome entry site.Virus Res2012 JanUjino Sdoi: 10.1016/j.virusres.2011.10.003
28231410Transcriptomic analyses of RNA-binding proteins reveal eIF3c promotes cell proliferation in hepatocellular carcinoma.Cancer Sci2017 MayLi Tdoi: 10.1111/cas.13209
27947744-----
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000569690EIF3C-214581-ENSP00000455278148 (aa)-H3BPE4
ENST00000566866EIF3C-2112986-ENSP00000457418913 (aa)-Q99613
ENST00000395587EIF3C-2023137XM_017023814ENSP00000378953913 (aa)XP_016879303Q99613
ENST00000566519EIF3C-210620--- (aa)--
ENST00000568426EIF3C-212572-ENSP00000455277132 (aa)-H3BPE3
ENST00000566086EIF3C-208424--- (aa)--
ENST00000565099EIF3C-206588--- (aa)--
ENST00000566501EIF3C-2093128-ENSP00000457963913 (aa)-Q99613
ENST00000569005EIF3C-213610--- (aa)--
ENST00000563139EIF3C-203516-ENSP0000045738979 (aa)-H3BTY8
ENST00000565932EIF3C-2073957--- (aa)--
ENST00000331666EIF3C-2013145-ENSP00000332604913 (aa)-Q99613
ENST00000564243EIF3C-2042870-ENSP00000456416903 (aa)-Q99613
ENST00000564839EIF3C-205586--- (aa)--
Gene Model
Click here to download ENSG00000184110's gene model file
Pathways
Pathway IDPathway NameSource
hsa03013RNA transportKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000184110's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000184110EIF3C100100.000ENSG00000205609EIF3CL10099.891
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000184110EIF3C10084.810ENSAPOG00000024092eif3c9284.339Acanthochromis_polyacanthus
ENSG00000184110EIF3C100100.000ENSAMEG00000015454-10098.686Ailuropoda_melanoleuca
ENSG00000184110EIF3C10083.544ENSACIG00000015082eif3c9970.460Amphilophus_citrinellus
ENSG00000184110EIF3C10084.810ENSAOCG00000021466eif3c9876.823Amphiprion_ocellaris
ENSG00000184110EIF3C10079.747ENSAOCG00000024752-5568.387Amphiprion_ocellaris
ENSG00000184110EIF3C10084.810ENSAPEG00000010521eif3c9876.823Amphiprion_percula
ENSG00000184110EIF3C10081.013ENSAPEG00000023503-6269.032Amphiprion_percula
ENSG00000184110EIF3C10084.810ENSATEG00000019001eif3c9876.630Anabas_testudineus
ENSG00000184110EIF3C10098.734ENSACAG00000005937-10086.354Anolis_carolinensis
ENSG00000184110EIF3C100100.000ENSANAG00000020640-10099.890Aotus_nancymaae
ENSG00000184110EIF3C10083.544ENSACLG00000009322eif3c9280.619Astatotilapia_calliptera
ENSG00000184110EIF3C10084.810ENSACLG00000009347eif3c9883.471Astatotilapia_calliptera
ENSG00000184110EIF3C10084.810ENSAMXG00000020949eif3c9876.638Astyanax_mexicanus
ENSG00000184110EIF3C100100.000ENSBTAG00000006543EIF3CL10098.028Bos_taurus
ENSG00000184110EIF3C9550.649WBGene00001226eif-3.C9343.243Caenorhabditis_elegans
ENSG00000184110EIF3C100100.000ENSCJAG00000006341-10099.671Callithrix_jacchus
ENSG00000184110EIF3C100100.000ENSCAFG00000017143-10098.576Canis_familiaris
ENSG00000184110EIF3C100100.000ENSCAFG00020017587-10098.686Canis_lupus_dingo
ENSG00000184110EIF3C100100.000ENSCHIG00000024795-10097.919Capra_hircus
ENSG00000184110EIF3C100100.000ENSTSYG00000003486-10098.357Carlito_syrichta
ENSG00000184110EIF3C100100.000ENSCAPG00000015887-10088.675Cavia_aperea
ENSG00000184110EIF3C100100.000ENSCPOG00000007533-10098.138Cavia_porcellus
ENSG00000184110EIF3C10088.608ENSCCAG00000029099-9983.187Cebus_capucinus
ENSG00000184110EIF3C100100.000ENSCCAG00000034928-10098.686Cebus_capucinus
ENSG00000184110EIF3C10095.946ENSCCAG00000027724-10094.524Cebus_capucinus
ENSG00000184110EIF3C100100.000ENSCATG00000032673-10099.890Cercocebus_atys
ENSG00000184110EIF3C100100.000ENSCLAG00000011094-10097.590Chinchilla_lanigera
ENSG00000184110EIF3C100100.000ENSCSAG00000006297-10099.890Chlorocebus_sabaeus
ENSG00000184110EIF3C5582.239ENSCHOG00000003120-8882.239Choloepus_hoffmanni
ENSG00000184110EIF3C10097.468ENSCPBG00000012407-9283.537Chrysemys_picta_bellii
ENSG00000184110EIF3C9757.143ENSCSAVG00000006744-9657.018Ciona_savignyi
ENSG00000184110EIF3C100100.000ENSCANG00000033626-10099.890Colobus_angolensis_palliatus
ENSG00000184110EIF3C100100.000ENSCGRG00001015265EIF3C10096.933Cricetulus_griseus_chok1gshd
ENSG00000184110EIF3C100100.000ENSCGRG00000006124-9994.400Cricetulus_griseus_crigri
ENSG00000184110EIF3C10084.810ENSCSEG00000017770eif3c10074.672Cynoglossus_semilaevis
ENSG00000184110EIF3C10084.810ENSCVAG00000005402eif3c9881.656Cyprinodon_variegatus
ENSG00000184110EIF3C10083.544ENSDARG00000016443eif3c9876.387Danio_rerio
ENSG00000184110EIF3C100100.000ENSDNOG00000031497-10098.467Dasypus_novemcinctus
ENSG00000184110EIF3C100100.000ENSDORG00000016471Eif3c10098.357Dipodomys_ordii
ENSG00000184110EIF3C9757.500FBgn0034258eIF3c9550.885Drosophila_melanogaster
ENSG00000184110EIF3C10098.734ENSETEG00000013527-9298.624Echinops_telfairi
ENSG00000184110EIF3C10068.354ENSEBUG00000001629eif3c9963.402Eptatretus_burgeri
ENSG00000184110EIF3C100100.000ENSECAG00000008746-10098.576Equus_caballus
ENSG00000184110EIF3C6564.286ENSEEUG00000000726-6464.286Erinaceus_europaeus
ENSG00000184110EIF3C100100.000ENSEEUG00000006148-10097.494Erinaceus_europaeus
ENSG00000184110EIF3C10086.076ENSELUG00000022257eif3c9283.748Esox_lucius
ENSG00000184110EIF3C100100.000ENSFCAG00000015782-10098.467Felis_catus
ENSG00000184110EIF3C100100.000ENSFDAG00000003588-10097.919Fukomys_damarensis
ENSG00000184110EIF3C10084.810ENSFHEG00000014154EIF3C9383.660Fundulus_heteroclitus
ENSG00000184110EIF3C10081.013ENSGMOG00000016885eif3c9975.897Gadus_morhua
ENSG00000184110EIF3C7381.481ENSGALG00000047139-6585.714Gallus_gallus
ENSG00000184110EIF3C10082.278ENSGACG00000007652eif3c10075.900Gasterosteus_aculeatus
ENSG00000184110EIF3C10097.468ENSGAGG00000006666-10083.825Gopherus_agassizii
ENSG00000184110EIF3C100100.000ENSGGOG00000022677-10099.614Gorilla_gorilla
ENSG00000184110EIF3C100100.000ENSGGOG00000026919EIF3C10099.772Gorilla_gorilla
ENSG00000184110EIF3C100100.000ENSHGLG00000011445EIF3C10097.700Heterocephalus_glaber_female
ENSG00000184110EIF3C100100.000ENSHGLG00100000217EIF3C10097.700Heterocephalus_glaber_male
ENSG00000184110EIF3C10084.810ENSHCOG00000019694eif3c9875.682Hippocampus_comes
ENSG00000184110EIF3C10083.544ENSIPUG00000016878eif3c9876.304Ictalurus_punctatus
ENSG00000184110EIF3C100100.000ENSSTOG00000021278-10098.686Ictidomys_tridecemlineatus
ENSG00000184110EIF3C100100.000ENSJJAG00000012722Eif3c10097.043Jaculus_jaculus
ENSG00000184110EIF3C10084.810ENSKMAG00000021662eif3c9776.580Kryptolebias_marmoratus
ENSG00000184110EIF3C10084.810ENSLBEG00000023370eif3c9974.651Labrus_bergylta
ENSG00000184110EIF3C10092.405ENSLACG00000000770eif3c10080.305Latimeria_chalumnae
ENSG00000184110EIF3C100100.000ENSLAFG00000027426-10097.919Loxodonta_africana
ENSG00000184110EIF3C100100.000ENSMFAG00000041930-10099.890Macaca_fascicularis
ENSG00000184110EIF3C100100.000ENSMMUG00000011798-10099.890Macaca_mulatta
ENSG00000184110EIF3C100100.000ENSMNEG00000023915-10099.890Macaca_nemestrina
ENSG00000184110EIF3C100100.000ENSMLEG00000027529-10099.890Mandrillus_leucophaeus
ENSG00000184110EIF3C10084.810ENSMAMG00000012512eif3c9584.667Mastacembelus_armatus
ENSG00000184110EIF3C10083.544ENSMZEG00005013685eif3c9280.782Maylandia_zebra
ENSG00000184110EIF3C10084.810ENSMZEG00005013699eif3c9883.471Maylandia_zebra
ENSG00000184110EIF3C100100.000ENSMAUG00000010621Eif3c10096.824Mesocricetus_auratus
ENSG00000184110EIF3C100100.000ENSMICG00000036748-10098.467Microcebus_murinus
ENSG00000184110EIF3C100100.000ENSMOCG00000004204Eif3c10094.414Microtus_ochrogaster
ENSG00000184110EIF3C10084.810ENSMMOG00000001572eif3c7282.673Mola_mola
ENSG00000184110EIF3C10095.946ENSMODG00000015579-10095.077Monodelphis_domestica
ENSG00000184110EIF3C10083.544ENSMALG00000008907eif3c9284.437Monopterus_albus
ENSG00000184110EIF3C100100.000MGP_CAROLIEiJ_G0030451Eif3c10096.714Mus_caroli
ENSG00000184110EIF3C100100.000ENSMUSG00000030738Eif3c10096.714Mus_musculus
ENSG00000184110EIF3C100100.000MGP_PahariEiJ_G0013661Eif3c10096.276Mus_pahari
ENSG00000184110EIF3C100100.000MGP_SPRETEiJ_G0031565Eif3c10096.714Mus_spretus
ENSG00000184110EIF3C100100.000ENSMPUG00000012732-10097.955Mustela_putorius_furo
ENSG00000184110EIF3C100100.000ENSMLUG00000015558-10097.043Myotis_lucifugus
ENSG00000184110EIF3C9387.273ENSNGAG00000010901-9887.273Nannospalax_galili
ENSG00000184110EIF3C100100.000ENSNGAG00000007177-10097.700Nannospalax_galili
ENSG00000184110EIF3C100100.000ENSNLEG00000001425-9193.333Nomascus_leucogenys
ENSG00000184110EIF3C9578.667ENSMEUG00000005317-10061.392Notamacropus_eugenii
ENSG00000184110EIF3C10077.923ENSMEUG00000009939-9977.948Notamacropus_eugenii
ENSG00000184110EIF3C10099.324ENSOPRG00000000931-10098.028Ochotona_princeps
ENSG00000184110EIF3C100100.000ENSODEG00000013508-10097.809Octodon_degus
ENSG00000184110EIF3C6663.201ENSONIG00000011434eif3c9963.201Oreochromis_niloticus
ENSG00000184110EIF3C10098.734ENSOANG00000011410-10091.272Ornithorhynchus_anatinus
ENSG00000184110EIF3C100100.000ENSOCUG00000022489-10098.576Oryctolagus_cuniculus
ENSG00000184110EIF3C10083.544ENSORLG00000006318eif3c9872.148Oryzias_latipes
ENSG00000184110EIF3C10083.544ENSORLG00020015713eif3c9682.881Oryzias_latipes_hni
ENSG00000184110EIF3C10083.544ENSORLG00015013772eif3c9774.614Oryzias_latipes_hsok
ENSG00000184110EIF3C10084.810ENSOMEG00000020450eif3c10074.329Oryzias_melastigma
ENSG00000184110EIF3C100100.000ENSOGAG00000012737-10098.357Otolemur_garnettii
ENSG00000184110EIF3C100100.000ENSOARG00000002892-10097.919Ovis_aries
ENSG00000184110EIF3C100100.000ENSPPRG00000012336-10098.467Panthera_pardus
ENSG00000184110EIF3C100100.000ENSPTIG00000011712-10098.467Panthera_tigris_altaica
ENSG00000184110EIF3C100100.000ENSPANG00000021151-10099.890Papio_anubis
ENSG00000184110EIF3C10084.810ENSPKIG00000002049eif3c9877.233Paramormyrops_kingsleyae
ENSG00000184110EIF3C10084.810ENSPMGG00000005409eif3c9484.743Periophthalmus_magnuspinnatus
ENSG00000184110EIF3C100100.000ENSPEMG00000010899Eif3c10095.509Peromyscus_maniculatus_bairdii
ENSG00000184110EIF3C10098.734ENSPCIG00000025206-10095.077Phascolarctos_cinereus
ENSG00000184110EIF3C10084.810ENSPFOG00000004476eif3c9875.461Poecilia_formosa
ENSG00000184110EIF3C10084.810ENSPLAG00000017480eif3c9875.529Poecilia_latipinna
ENSG00000184110EIF3C10084.810ENSPMEG00000019512eif3c9875.543Poecilia_mexicana
ENSG00000184110EIF3C100100.000ENSPPYG00000007227-10096.605Pongo_abelii
ENSG00000184110EIF3C6798.502ENSPCAG00000012710-10098.502Procavia_capensis
ENSG00000184110EIF3C100100.000ENSPCOG00000019289-10098.905Propithecus_coquereli
ENSG00000184110EIF3C100100.000ENSPVAG00000005804-10098.138Pteropus_vampyrus
ENSG00000184110EIF3C10083.544ENSPNYG00000016530eif3c8181.818Pundamilia_nyererei
ENSG00000184110EIF3C10083.544ENSPNAG00000024040eif3c9977.049Pygocentrus_nattereri
ENSG00000184110EIF3C10098.734ENSRNOG00000018761Eif3c10096.166Rattus_norvegicus
ENSG00000184110EIF3C100100.000ENSRBIG00000044009-9897.433Rhinopithecus_bieti
ENSG00000184110EIF3C100100.000ENSRROG00000043626-10099.890Rhinopithecus_roxellana
ENSG00000184110EIF3C7731.365YMR309C-8130.699Saccharomyces_cerevisiae
ENSG00000184110EIF3C100100.000ENSSBOG00000032155-10099.562Saimiri_boliviensis_boliviensis
ENSG00000184110EIF3C10098.734ENSSHAG00000011808-10094.677Sarcophilus_harrisii
ENSG00000184110EIF3C10084.810ENSSFOG00015021823eif3c9876.393Scleropages_formosus
ENSG00000184110EIF3C10084.810ENSSMAG00000016638eif3c9777.069Scophthalmus_maximus
ENSG00000184110EIF3C10084.810ENSSDUG00000023117eif3c9876.471Seriola_dumerili
ENSG00000184110EIF3C10084.810ENSSLDG00000009706eif3c9383.660Seriola_lalandi_dorsalis
ENSG00000184110EIF3C10097.468ENSSPUG00000016470-10084.590Sphenodon_punctatus
ENSG00000184110EIF3C10084.810ENSSPAG00000000426eif3c10076.413Stegastes_partitus
ENSG00000184110EIF3C100100.000ENSSSCG00000034927-10098.686Sus_scrofa
ENSG00000184110EIF3C10083.544ENSTRUG00000008951eif3c9974.920Takifugu_rubripes
ENSG00000184110EIF3C10083.544ENSTNIG00000015210eif3c10074.891Tetraodon_nigroviridis
ENSG00000184110EIF3C100100.000ENSTTRG00000005880-10098.248Tursiops_truncatus
ENSG00000184110EIF3C7398.779ENSUAMG00000001127-91100.000Ursus_americanus
ENSG00000184110EIF3C100100.000ENSUMAG00000010927-10098.576Ursus_maritimus
ENSG00000184110EIF3C100100.000ENSVVUG00000025970-10097.152Vulpes_vulpes
ENSG00000184110EIF3C10089.873ENSXETG00000002941eif3c10079.072Xenopus_tropicalis
ENSG00000184110EIF3C10084.810ENSXMAG00000013796eif3c10075.054Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001732formation of cytoplasmic translation initiation complex-IEAProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003743translation initiation factor activity21873635.IBAFunction
GO:0003743translation initiation factor activity17322308.18599441.ICFunction
GO:0003743translation initiation factor activity17581632.25849773.IDAFunction
GO:0005515protein binding10504338.18599441.18628297.22190034.22323517.23623729.24092755.29426014.IPIFunction
GO:0005829cytosol-TASComponent
GO:0005852eukaryotic translation initiation factor 3 complex21873635.IBAComponent
GO:0005852eukaryotic translation initiation factor 3 complex17322308.17581632.18599441.25849773.IDAComponent
GO:0006413translational initiation21873635.IBAProcess
GO:0006413translational initiation17322308.18599441.ICProcess
GO:0006413translational initiation17581632.IDAProcess
GO:0006413translational initiation-TASProcess
GO:0016282eukaryotic 43S preinitiation complex-IEAComponent
GO:0031369translation initiation factor binding21873635.IBAFunction
GO:0033290eukaryotic 48S preinitiation complex-IEAComponent
GO:0045727positive regulation of translation24092755.IPIProcess
GO:1902416positive regulation of mRNA binding24092755.IPIProcess

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