EuRBPDB

Description

Ensembl ID: ENSG00000184432 (Gene tree)
Gene ID: 9276
Gene Symbol: COPB2
Alias: beta'-COP|betaprime-COP
Full Name: coatomer protein complex subunit beta 2
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Minus strand
Length: 34,133 bases
Position: chr3:139,355,600-139,389,732
Accession: 2232
RBP type: non-canonical RBP
Summary: The Golgi coatomer complex (see MIM 601924) constitutes the coat of nonclathrin-coated vesicles and is essential for Golgi budding and vesicular trafficking. It consists of 7 protein subunits, including COPB2.[supplied by OMIM, Jul 2002]

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity

PID	Title	Article	Time	Author	Doi
27929413	Exosome Proteome of U-87MG Glioblastoma Cells.	Biology (Basel)	2016 Dec 6	Chun S	-
2706270	Specific RNA binding by Q beta coat protein.	Biochemistry	1989 Jan 10	Witherell GW	-

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000503326	COPB2-203	433	-	ENSP00000426682	118 (aa)	-	H0YAC7
ENST00000502734	COPB2-202	680	-	-	- (aa)	-	-
ENST00000504295	COPB2-204	3524	-	-	- (aa)	-	-
ENST00000514508	COPB2-212	635	-	ENSP00000422469	77 (aa)	-	D6RBZ7
ENST00000510181	COPB2-206	1037	-	-	- (aa)	-	-
ENST00000515006	COPB2-213	548	-	ENSP00000423271	152 (aa)	-	D6R997
ENST00000512309	COPB2-210	565	-	ENSP00000422917	177 (aa)	-	H0Y938
ENST00000512242	COPB2-209	848	-	ENSP00000427185	86 (aa)	-	D6RCL6
ENST00000507777	COPB2-205	3034	XM_017007513	ENSP00000422295	877 (aa)	XP_016863002	P35606
ENST00000512153	COPB2-208	629	-	ENSP00000422547	111 (aa)	-	D6RBT6
ENST00000513274	COPB2-211	729	-	ENSP00000424144	89 (aa)	-	D6RBG7
ENST00000333188	COPB2-201	3360	-	ENSP00000329419	906 (aa)	-	P35606
ENST00000510491	COPB2-207	669	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000184432	COPB2	99	78.947	WBGene00009542	copb-2	84	65.562	Caenorhabditis_elegans

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000139	Golgi membrane	-	TAS	Component
GO:0005198	structural molecule activity	-	IEA	Function
GO:0005515	protein binding	21988832.25609649.	IPI	Function
GO:0005789	endoplasmic reticulum membrane	-	TAS	Component
GO:0005829	cytosol	-	TAS	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0006888	ER to Golgi vesicle-mediated transport	21873635.	IBA	Process
GO:0006888	ER to Golgi vesicle-mediated transport	-	TAS	Process
GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	21873635.	IBA	Process
GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	11030615.	TAS	Process
GO:0006891	intra-Golgi vesicle-mediated transport	21873635.	IBA	Process
GO:0006891	intra-Golgi vesicle-mediated transport	8335000.	IDA	Process
GO:0030126	COPI vesicle coat	21873635.	IBA	Component
GO:0030126	COPI vesicle coat	8335000.14729954.	IDA	Component
GO:0030133	transport vesicle	-	TAS	Component
GO:1901998	toxin transport	-	IEA	Process