EuRBPDB

Description

Ensembl ID: ENSG00000184743 (Gene tree)
Gene ID: 25923
Gene Symbol: ATL3
Alias: DKFZP564J0863
Full Name: atlastin GTPase 3
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 47,893 bases
Position: chr11:63,624,082-63,671,974
Accession: 24526
RBP type: non-canonical RBP
Summary: This gene encodes a member of a family of dynamin-like, integral membrane GTPases. The encoded protein is required for the proper formation of the network of interconnected tubules of the endoplasmic reticulum. Mutations in this gene may be associated with hereditary sensory neuropathy type IF. Alternatively spliced transcript variants that encode distinct isoforms have been described. [provided by RefSeq, Feb 2014]

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000540699	ATL3-204	714	-	ENSP00000441842	169 (aa)	-	F5GWF8
ENST00000398868	ATL3-201	7135	XM_006718493	ENSP00000381844	541 (aa)	XP_006718556	Q6DD88
ENST00000535789	ATL3-202	828	-	-	- (aa)	-	-
ENST00000538786	ATL3-203	1920	XM_024448428	ENSP00000437593	523 (aa)	XP_024304196	F5H6I7

Gene Model

Protein-Protein Interaction (PPI)

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003924	GTPase activity	18270207.	NAS	Function
GO:0005515	protein binding	23969831.	IPI	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005783	endoplasmic reticulum	18270207.	IDA	Component
GO:0005789	endoplasmic reticulum membrane	-	IEA	Component
GO:0006888	ER to Golgi vesicle-mediated transport	18270207.	IMP	Process
GO:0007029	endoplasmic reticulum organization	18270207.19665976.	IMP	Process
GO:0007030	Golgi organization	18270207.	IMP	Process
GO:0016020	membrane	19946888.	HDA	Component
GO:0016021	integral component of membrane	18270207.	IDA	Component
GO:0042802	identical protein binding	18270207.	IDA	Function
GO:0051260	protein homooligomerization	18270207.	IDA	Process
GO:0071782	endoplasmic reticulum tubular network	23969831.	IDA	Component
GO:0098826	endoplasmic reticulum tubular network membrane	25548161.27619977.	IDA	Component
GO:1903373	positive regulation of endoplasmic reticulum tubular network organization	27619977.	IMP	Process