EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000185414 (Gene tree)
Gene ID
51263
Gene Symbol
MRPL30
Alias
MRP-L28|RPML28
Full Name
mitochondrial ribosomal protein L30
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
18,479 bases
Position
chr2:99,181,079-99,199,557
Accession
14036
RBP type
canonical RBP
Summary
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. Alternative splicing results in multiple transcript variants. Pseudogenes corresponding to this gene are found on chromosomes 6p and 12p. Read-through transcription also exists between this gene and the neighboring upstream lipoyltransferase 1 (LIPT1) gene. [provided by RefSeq, Mar 2011]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000338057Ribosomal_L30PF00327.201.3e-1211
ENSP00000386970Ribosomal_L30PF00327.201.3e-0511
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000409145MRPL30-202562-ENSP00000386970101 (aa)-B8ZZV5
ENST00000409841MRPL30-2031497-ENSP00000386752161 (aa)-Q8TCC3
ENST00000338148MRPL30-2012605-ENSP00000338057161 (aa)-Q8TCC3
ENST00000473743MRPL30-205567--- (aa)--
ENST00000465432MRPL30-2041752--- (aa)--
Gene Model
Click here to download ENSG00000185414's gene model file
Pathways
Pathway IDPathway NameSource
hsa03010RibosomeKEGG
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000185414rs12053372299193592?Lung function (FEV1/FVC)30595370EFO_0004713
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000185414's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000185414MRPL3010086.335ENSAMEG00000013344-8886.335Ailuropoda_melanoleuca
ENSG00000185414MRPL3010094.410ENSANAG00000028266-10094.410Aotus_nancymaae
ENSG00000185414MRPL309885.443ENSBTAG00000038949MRPL309885.443Bos_taurus
ENSG00000185414MRPL309455.556ENSBTAG00000050222-9455.556Bos_taurus
ENSG00000185414MRPL3010093.789ENSCJAG00000007085-10093.789Callithrix_jacchus
ENSG00000185414MRPL3010086.957ENSCAFG00000031628-10086.957Canis_familiaris
ENSG00000185414MRPL3010086.957ENSCAFG00020024965-10086.957Canis_lupus_dingo
ENSG00000185414MRPL309886.709ENSCHIG00000024135-9886.709Capra_hircus
ENSG00000185414MRPL3010090.683ENSTSYG00000026939-10090.683Carlito_syrichta
ENSG00000185414MRPL3010075.155ENSTSYG00000037066-10075.155Carlito_syrichta
ENSG00000185414MRPL309686.452ENSCPOG00000010716-10086.452Cavia_porcellus
ENSG00000185414MRPL3010092.547ENSCCAG00000034467-10092.547Cebus_capucinus
ENSG00000185414MRPL3010089.506ENSCCAG00000017186-10089.506Cebus_capucinus
ENSG00000185414MRPL3010095.031ENSCATG00000041078-10095.031Cercocebus_atys
ENSG00000185414MRPL309690.323ENSCLAG00000005684-8790.323Chinchilla_lanigera
ENSG00000185414MRPL3010093.168ENSCSAG00000017218-10093.168Chlorocebus_sabaeus
ENSG00000185414MRPL3010082.609ENSCHOG00000005804-9482.609Choloepus_hoffmanni
ENSG00000185414MRPL3010094.410ENSCANG00000043682-10094.410Colobus_angolensis_palliatus
ENSG00000185414MRPL309887.342ENSCGRG00001006119Mrpl309987.342Cricetulus_griseus_chok1gshd
ENSG00000185414MRPL309887.342ENSCGRG00000001910Mrpl309987.342Cricetulus_griseus_crigri
ENSG00000185414MRPL3010082.609ENSDNOG00000018648-10082.609Dasypus_novemcinctus
ENSG00000185414MRPL3010080.745ENSDNOG00000044391-10080.745Dasypus_novemcinctus
ENSG00000185414MRPL3010077.640ENSDNOG00000032825-10077.640Dasypus_novemcinctus
ENSG00000185414MRPL309776.282ENSDNOG00000042586-9776.282Dasypus_novemcinctus
ENSG00000185414MRPL309891.139ENSDORG00000010734Mrpl309991.139Dipodomys_ordii
ENSG00000185414MRPL3010085.093ENSETEG00000005006-9585.093Echinops_telfairi
ENSG00000185414MRPL309887.261ENSEASG00005021843-6187.261Equus_asinus_asinus
ENSG00000185414MRPL3010085.714ENSECAG00000015993-6385.714Equus_caballus
ENSG00000185414MRPL309989.308ENSFCAG00000024233-6589.873Felis_catus
ENSG00000185414MRPL309687.742ENSFDAG00000009803-8787.742Fukomys_damarensis
ENSG00000185414MRPL3010098.758ENSGGOG00000041571-10098.758Gorilla_gorilla
ENSG00000185414MRPL309688.961ENSHGLG00000006467-10088.961Heterocephalus_glaber_female
ENSG00000185414MRPL309688.961ENSHGLG00100016969-10088.961Heterocephalus_glaber_male
ENSG00000185414MRPL309884.810ENSJJAG00000006196Mrpl309884.810Jaculus_jaculus
ENSG00000185414MRPL3010085.093ENSLAFG00000008151-8885.093Loxodonta_africana
ENSG00000185414MRPL3010093.789ENSMFAG00000001729MRPL3010093.789Macaca_fascicularis
ENSG00000185414MRPL3010093.789ENSMMUG00000038088-10093.789Macaca_mulatta
ENSG00000185414MRPL3010078.882ENSMNEG00000034146-10078.882Macaca_nemestrina
ENSG00000185414MRPL3010094.410ENSMLEG00000027758-10094.410Mandrillus_leucophaeus
ENSG00000185414MRPL309886.709ENSMAUG00000017646-9286.709Mesocricetus_auratus
ENSG00000185414MRPL309467.550ENSMAUG00000014813-9467.550Mesocricetus_auratus
ENSG00000185414MRPL309884.177ENSMAUG00000021333-9284.177Mesocricetus_auratus
ENSG00000185414MRPL3010090.062ENSMICG00000011627-10090.062Microcebus_murinus
ENSG00000185414MRPL309886.076ENSMOCG00000005615Mrpl309986.076Microtus_ochrogaster
ENSG00000185414MRPL309885.443MGP_CAROLIEiJ_G0014057Mrpl3010085.156Mus_caroli
ENSG00000185414MRPL309883.544ENSMUSG00000026087Mrpl3010082.812Mus_musculus
ENSG00000185414MRPL309884.810MGP_PahariEiJ_G0027303Mrpl3010085.156Mus_pahari
ENSG00000185414MRPL309884.810MGP_SPRETEiJ_G0014861Mrpl3010084.375Mus_spretus
ENSG00000185414MRPL3010084.472ENSMPUG00000011085-10084.472Mustela_putorius_furo
ENSG00000185414MRPL309886.076ENSMLUG00000029851-9886.076Myotis_lucifugus
ENSG00000185414MRPL309785.256ENSNGAG00000020323Mrpl309885.256Nannospalax_galili
ENSG00000185414MRPL3010097.516ENSNLEG00000027490-10097.516Nomascus_leucogenys
ENSG00000185414MRPL309882.911ENSOPRG00000007331-9582.911Ochotona_princeps
ENSG00000185414MRPL309785.897ENSODEG00000006001-9685.897Octodon_degus
ENSG00000185414MRPL309680.645ENSODEG00000018681-8780.645Octodon_degus
ENSG00000185414MRPL309685.161ENSODEG00000019187-8785.161Octodon_degus
ENSG00000185414MRPL309685.161ENSODEG00000009949-9685.161Octodon_degus
ENSG00000185414MRPL3010086.957ENSOCUG00000004111-10086.957Oryctolagus_cuniculus
ENSG00000185414MRPL309881.646ENSOGAG00000025954-9881.646Otolemur_garnettii
ENSG00000185414MRPL3010079.503ENSOGAG00000030016-10079.503Otolemur_garnettii
ENSG00000185414MRPL309887.898ENSOGAG00000002241-9487.898Otolemur_garnettii
ENSG00000185414MRPL309886.709ENSOARG00000013442-9886.709Ovis_aries
ENSG00000185414MRPL3010098.758ENSPPAG00000038932-10098.758Pan_paniscus
ENSG00000185414MRPL3010088.199ENSPPRG00000008888-10088.199Panthera_pardus
ENSG00000185414MRPL3010088.199ENSPTIG00000004998-10088.199Panthera_tigris_altaica
ENSG00000185414MRPL3010098.758ENSPTRG00000012275-10098.758Pan_troglodytes
ENSG00000185414MRPL3010094.410ENSPANG00000033489-10094.410Papio_anubis
ENSG00000185414MRPL309877.215ENSPEMG00000007715-9977.215Peromyscus_maniculatus_bairdii
ENSG00000185414MRPL309887.342ENSPEMG00000018330-9987.342Peromyscus_maniculatus_bairdii
ENSG00000185414MRPL3010098.137ENSPPYG00000019961-10098.137Pongo_abelii
ENSG00000185414MRPL3010088.199ENSPCOG00000013471-10088.199Propithecus_coquereli
ENSG00000185414MRPL3010083.230ENSPCOG00000000860-10083.230Propithecus_coquereli
ENSG00000185414MRPL3010083.230ENSPVAG00000006587-9483.230Pteropus_vampyrus
ENSG00000185414MRPL309886.076ENSRNOG00000049330Mrpl309986.076Rattus_norvegicus
ENSG00000185414MRPL3010085.714ENSRBIG00000041744-10085.714Rhinopithecus_bieti
ENSG00000185414MRPL3010095.031ENSRROG00000044692-10095.031Rhinopithecus_roxellana
ENSG00000185414MRPL3010094.410ENSSBOG00000036412-10094.410Saimiri_boliviensis_boliviensis
ENSG00000185414MRPL309056.849ENSSPUG00000000679-7056.849Sphenodon_punctatus
ENSG00000185414MRPL3010088.199ENSSSCG00000008183-10088.199Sus_scrofa
ENSG00000185414MRPL3010084.472ENSTTRG00000004937-9384.472Tursiops_truncatus
ENSG00000185414MRPL3010085.093ENSUAMG00000015567-10085.093Ursus_americanus
ENSG00000185414MRPL309886.076ENSUMAG00000008932-8786.076Ursus_maritimus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003735structural constituent of ribosome-IEAFunction
GO:0005739mitochondrion21873635.IBAComponent
GO:0005739mitochondrion28892042.IDAComponent
GO:0005743mitochondrial inner membrane-TASComponent
GO:0005762mitochondrial large ribosomal subunit25278503.28892042.IDAComponent
GO:0070125mitochondrial translational elongation-TASProcess
GO:0070126mitochondrial translational termination-TASProcess

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