EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000186184 (Gene tree)
Gene ID
51082
Gene Symbol
POLR1D
Alias
RPAC2|RPA16|RPO1-3|RPA9|MGC9850
Full Name
RNA polymerase I and III subunit D
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
123,496 bases
Position
chr13:27,620,742-27,744,237
Accession
20422
RBP type
canonical RBP
Summary
The protein encoded by this gene is a component of the RNA polymerase I and RNA polymerase III complexes, which function in the synthesis of ribosomal RNA precursors and small RNAs, respectively. Mutations in this gene are a cause of Treacher Collins syndrome (TCS), a craniofacial development disorder. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2011]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000382603RNA_pol_L_2PF13656.69.2e-2811
ENSP00000302478RNA_pol_L_2PF13656.61.2e-2711
ENSP00000495898RNA_pol_L_2PF13656.61.2e-2711
ENSP00000382603RNA_pol_LPF01193.241.7e-1211
ENSP00000302478RNA_pol_LPF01193.242.2e-1211
ENSP00000495898RNA_pol_LPF01193.242.2e-1211
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000647448POLR1D-224693-ENSP00000495898133 (aa)-P0DPB6
ENST00000636411POLR1D-215100--- (aa)--
ENST00000637071POLR1D-2201943-ENSP0000048971394 (aa)-A0A087WTY1
ENST00000636618POLR1D-216100--- (aa)--
ENST00000637389POLR1D-222129--- (aa)--
ENST00000302979POLR1D-2011166XM_005266412ENSP00000302478133 (aa)XP_005266469P0DPB6
ENST00000636226POLR1D-214100--- (aa)--
ENST00000626929POLR1D-209624--- (aa)--
ENST00000636679POLR1D-217100--- (aa)--
ENST00000636817POLR1D-2184592-ENSP0000049031046 (aa)-A0A1B0GUZ5
ENST00000465887POLR1D-2042118-ENSP0000048705742 (aa)-A0A087X0U2
ENST00000621089POLR1D-2071606-ENSP0000047821394 (aa)-A0A087WTY1
ENST00000636952POLR1D-2192869--- (aa)--
ENST00000637180POLR1D-2212262-ENSP0000049061994 (aa)-A0A087WTY1
ENST00000626064POLR1D-208988--- (aa)--
ENST00000630281POLR1D-2111634--- (aa)--
ENST00000636117POLR1D-213100--- (aa)--
ENST00000472179POLR1D-2051021--- (aa)--
ENST00000627604POLR1D-210565-ENSP000004863272 (aa)-UPI000011EC8E
ENST00000489647POLR1D-2061723-ENSP0000048365642 (aa)-A0A087X0U2
ENST00000645412POLR1D-2231919-ENSP00000496567122 (aa)-P0DPB5
ENST00000630983POLR1D-2121931-ENSP0000048692833 (aa)-Q7Z776
ENST00000399697POLR1D-2032036-ENSP00000382604122 (aa)-P0DPB5
ENST00000399696POLR1D-202668-ENSP00000382603116 (aa)-A0A0R4J2F3
Gene Model
Click here to download ENSG00000186184's gene model file
Pathways
Pathway IDPathway NameSource
hsa03020RNA polymeraseKEGG
hsa04623Cytosolic DNA-sensing pathwayKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000186184Cholesterol1.09177116690462E-517903299
ENSG00000186184Cholesterol1.04954817129063E-517903299
ENSG00000186184Cholesterol1.23189226920023E-517903299
ENSG00000186184Lymphoma, Large B-Cell, Diffuse7E-621471979
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000186184rs777342391327627914AHighest math class taken (MTAG)30038396[0.012-0.025] unit increase0.0182EFO_0004875
ENSG00000186184rs70971327623299?Large B-cell lymphoma21471979[1.23-1.67]1.44EFO_0000403
ENSG00000186184rs95128411327735509GPlasma parathyroid hormone levels30134803[0.071-0.189] unit increase0.13EFO_0004752
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000186184's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000186184POLR1D9667.568ENSAPOG00000021882polr1d9867.568Acanthochromis_polyacanthus
ENSG00000186184POLR1D10098.276ENSAMEG00000019095POLR1D10098.400Ailuropoda_melanoleuca
ENSG00000186184POLR1D9270.370ENSACIG00000013328polr1d9470.370Amphilophus_citrinellus
ENSG00000186184POLR1D9766.964ENSAOCG00000018500polr1d9866.964Amphiprion_ocellaris
ENSG00000186184POLR1D9766.071ENSAPEG00000009489polr1d9866.071Amphiprion_percula
ENSG00000186184POLR1D9267.290ENSATEG00000019322polr1d9467.290Anabas_testudineus
ENSG00000186184POLR1D9665.766ENSACAG00000015753POLR1D9665.766Anolis_carolinensis
ENSG00000186184POLR1D10098.496ENSANAG00000024486POLR1D10098.496Aotus_nancymaae
ENSG00000186184POLR1D9271.028ENSACLG00000023805polr1d9471.028Astatotilapia_calliptera
ENSG00000186184POLR1D9070.192ENSAMXG00000036118polr1d9268.868Astyanax_mexicanus
ENSG00000186184POLR1D10095.690ENSBTAG00000008642POLR1D10094.737Bos_taurus
ENSG00000186184POLR1D10095.690ENSBTAG00000033252-10094.737Bos_taurus
ENSG00000186184POLR1D7137.805WBGene00010230rpac-195737.805Caenorhabditis_elegans
ENSG00000186184POLR1D10097.744ENSCJAG00000044669POLR1D10097.744Callithrix_jacchus
ENSG00000186184POLR1D10098.496ENSCAFG00000006755POLR1D10098.496Canis_familiaris
ENSG00000186184POLR1D10096.552ENSCHIG00000021910POLR1D10095.489Capra_hircus
ENSG00000186184POLR1D10094.828ENSTSYG00000026817-9394.355Carlito_syrichta
ENSG00000186184POLR1D10084.746ENSTSYG00000034852-9884.874Carlito_syrichta
ENSG00000186184POLR1D9654.688ENSCAPG00000006058-9954.688Cavia_aperea
ENSG00000186184POLR1D9655.469ENSCPOG00000030450-9955.469Cavia_porcellus
ENSG00000186184POLR1D10096.992ENSCCAG00000021349-10096.992Cebus_capucinus
ENSG00000186184POLR1D10078.947ENSCCAG00000020191-10078.947Cebus_capucinus
ENSG00000186184POLR1D10098.496ENSCATG00000030710-10098.496Cercocebus_atys
ENSG00000186184POLR1D10087.970ENSCATG00000022900-10087.970Cercocebus_atys
ENSG00000186184POLR1D10096.552ENSCLAG00000017623POLR1D10096.774Chinchilla_lanigera
ENSG00000186184POLR1D8478.351ENSCPBG00000004719POLR1D9678.351Chrysemys_picta_bellii
ENSG00000186184POLR1D10095.489ENSCANG00000037694-10095.489Colobus_angolensis_palliatus
ENSG00000186184POLR1D10099.138ENSCANG00000028632-10098.496Colobus_angolensis_palliatus
ENSG00000186184POLR1D10097.414ENSCGRG00001021251Polr1d10096.992Cricetulus_griseus_chok1gshd
ENSG00000186184POLR1D10097.414ENSCGRG00000011639Polr1d10096.992Cricetulus_griseus_crigri
ENSG00000186184POLR1D9070.192ENSCSEG00000018268polr1d9666.071Cynoglossus_semilaevis
ENSG00000186184POLR1D9171.429ENSCVAG00000018527polr1d9271.429Cyprinodon_variegatus
ENSG00000186184POLR1D9566.364ENSDARG00000037570polr1d9866.364Danio_rerio
ENSG00000186184POLR1D10096.552ENSDNOG00000043676-10096.241Dasypus_novemcinctus
ENSG00000186184POLR1D10094.828ENSDNOG00000046247-10094.030Dasypus_novemcinctus
ENSG00000186184POLR1D10095.690ENSDORG00000029155Polr1d10095.489Dipodomys_ordii
ENSG00000186184POLR1D7443.023FBgn0086447l(2)37Cg8143.023Drosophila_melanogaster
ENSG00000186184POLR1D10091.379ENSETEG00000012797POLR1D10090.323Echinops_telfairi
ENSG00000186184POLR1D7472.093ENSEBUG00000011748polr1d6072.093Eptatretus_burgeri
ENSG00000186184POLR1D9697.656ENSEASG00005022487POLR1D9997.656Equus_asinus_asinus
ENSG00000186184POLR1D10096.552ENSEEUG00000013144POLR1D10096.774Erinaceus_europaeus
ENSG00000186184POLR1D9167.925ENSELUG00000005105rpac29367.925Esox_lucius
ENSG00000186184POLR1D10098.496ENSFCAG00000030162POLR1D10098.496Felis_catus
ENSG00000186184POLR1D8376.042ENSFALG00000011463POLR1D9576.042Ficedula_albicollis
ENSG00000186184POLR1D10096.992ENSFDAG00000004463POLR1D10096.992Fukomys_damarensis
ENSG00000186184POLR1D9172.642ENSFHEG00000015410polr1d9672.727Fundulus_heteroclitus
ENSG00000186184POLR1D5571.875ENSGALG00000007470POLR1D6371.875Gallus_gallus
ENSG00000186184POLR1D9172.381ENSGAFG00000001693polr1d9272.381Gambusia_affinis
ENSG00000186184POLR1D9967.826ENSGACG00000018585polr1d10068.644Gasterosteus_aculeatus
ENSG00000186184POLR1D9376.852ENSGAGG00000008503POLR1D9576.852Gopherus_agassizii
ENSG00000186184POLR1D100100.000ENSGGOG00000004235POLR1D100100.000Gorilla_gorilla
ENSG00000186184POLR1D9271.028ENSHBUG00000002111polr1d9471.028Haplochromis_burtoni
ENSG00000186184POLR1D10095.489ENSHGLG00000003202POLR1D10095.489Heterocephalus_glaber_female
ENSG00000186184POLR1D10095.489ENSHGLG00100009393POLR1D10095.489Heterocephalus_glaber_male
ENSG00000186184POLR1D9269.159ENSHCOG00000003258polr1d9469.159Hippocampus_comes
ENSG00000186184POLR1D9471.560ENSIPUG00000014810polr1d9571.560Ictalurus_punctatus
ENSG00000186184POLR1D10099.248ENSSTOG00000013877POLR1D10099.248Ictidomys_tridecemlineatus
ENSG00000186184POLR1D10093.103ENSJJAG00000022671-10093.333Jaculus_jaculus
ENSG00000186184POLR1D10075.862ENSJJAG00000021667-7576.190Jaculus_jaculus
ENSG00000186184POLR1D9166.981ENSKMAG00000015256polr1d9366.981Kryptolebias_marmoratus
ENSG00000186184POLR1D9172.381ENSLBEG00000015919polr1d9272.381Labrus_bergylta
ENSG00000186184POLR1D8871.569ENSLACG00000006810POLR1D9566.087Latimeria_chalumnae
ENSG00000186184POLR1D6077.143ENSLOCG00000014976polr1d10077.027Lepisosteus_oculatus
ENSG00000186184POLR1D10091.379ENSLAFG00000032290POLR1D10089.474Loxodonta_africana
ENSG00000186184POLR1D10099.138ENSMFAG00000045264POLR1D9798.400Macaca_fascicularis
ENSG00000186184POLR1D10079.699ENSMMUG00000041570-10079.699Macaca_mulatta
ENSG00000186184POLR1D10099.138ENSMMUG00000020386POLR1D10099.138Macaca_mulatta
ENSG00000186184POLR1D10099.248ENSMNEG00000008630-10099.248Macaca_nemestrina
ENSG00000186184POLR1D10082.707ENSMNEG00000038120-10082.707Macaca_nemestrina
ENSG00000186184POLR1D10088.722ENSMLEG00000032251-10088.722Mandrillus_leucophaeus
ENSG00000186184POLR1D10099.248ENSMLEG00000041048-10099.248Mandrillus_leucophaeus
ENSG00000186184POLR1D8771.287ENSMAMG00000014834polr1d9471.287Mastacembelus_armatus
ENSG00000186184POLR1D8874.510ENSMZEG00005006638polr1d9074.510Maylandia_zebra
ENSG00000186184POLR1D7978.261ENSMGAG00000005322POLR1D8478.261Meleagris_gallopavo
ENSG00000186184POLR1D10096.552ENSMAUG00000001946Polr1d10096.241Mesocricetus_auratus
ENSG00000186184POLR1D9980.303ENSMICG00000007349-10080.303Microcebus_murinus
ENSG00000186184POLR1D10096.992ENSMICG00000016883-10096.992Microcebus_murinus
ENSG00000186184POLR1D9996.212ENSMOCG00000021288Polr1d9996.212Microtus_ochrogaster
ENSG00000186184POLR1D9268.224ENSMMOG00000009605polr1d9468.224Mola_mola
ENSG00000186184POLR1D9184.906ENSMODG00000023881POLR1D9384.906Monodelphis_domestica
ENSG00000186184POLR1D9267.290ENSMALG00000010652polr1d9467.290Monopterus_albus
ENSG00000186184POLR1D10090.226MGP_CAROLIEiJ_G0028034Polr1d10090.226Mus_caroli
ENSG00000186184POLR1D10090.226ENSMUSG00000029642Polr1d10090.226Mus_musculus
ENSG00000186184POLR1D10089.474MGP_PahariEiJ_G0024600Polr1d10089.474Mus_pahari
ENSG00000186184POLR1D10090.977MGP_SPRETEiJ_G0029032Polr1d10090.977Mus_spretus
ENSG00000186184POLR1D10087.931ENSMLUG00000004118-9986.364Myotis_lucifugus
ENSG00000186184POLR1D10097.414ENSMLUG00000027169-10096.241Myotis_lucifugus
ENSG00000186184POLR1D10096.552ENSNGAG00000006014Polr1d10096.552Nannospalax_galili
ENSG00000186184POLR1D9271.028ENSNBRG00000020327polr1d9471.028Neolamprologus_brichardi
ENSG00000186184POLR1D100100.000ENSNLEG00000000358POLR1D100100.000Nomascus_leucogenys
ENSG00000186184POLR1D10081.203ENSODEG00000014801-10081.203Octodon_degus
ENSG00000186184POLR1D10095.489ENSODEG00000005294-10095.489Octodon_degus
ENSG00000186184POLR1D9181.905ENSOANG00000008708-9781.905Ornithorhynchus_anatinus
ENSG00000186184POLR1D10097.414ENSOCUG00000015706POLR1D8296.241Oryctolagus_cuniculus
ENSG00000186184POLR1D9268.224ENSORLG00000010257polr1d9468.224Oryzias_latipes
ENSG00000186184POLR1D9268.224ENSORLG00020000533polr1d7566.667Oryzias_latipes_hni
ENSG00000186184POLR1D9269.159ENSORLG00015013267polr1d7567.257Oryzias_latipes_hsok
ENSG00000186184POLR1D9766.071ENSOMEG00000014912polr1d7766.957Oryzias_melastigma
ENSG00000186184POLR1D10096.992ENSOGAG00000014601POLR1D10096.992Otolemur_garnettii
ENSG00000186184POLR1D10096.552ENSOARG00000017005POLR1D9695.200Ovis_aries
ENSG00000186184POLR1D10098.496ENSPPAG00000028138POLR1D10098.496Pan_paniscus
ENSG00000186184POLR1D9998.485ENSPPRG00000003381POLR1D9998.485Panthera_pardus
ENSG00000186184POLR1D10098.276ENSPTIG00000018137POLR1D9398.387Panthera_tigris_altaica
ENSG00000186184POLR1D100100.000ENSPTRG00000005734POLR1D100100.000Pan_troglodytes
ENSG00000186184POLR1D10099.248ENSPANG00000020259-10099.248Papio_anubis
ENSG00000186184POLR1D10087.970ENSPANG00000035051-10087.970Papio_anubis
ENSG00000186184POLR1D9266.355ENSPKIG00000021891polr1d9450.847Paramormyrops_kingsleyae
ENSG00000186184POLR1D9674.775ENSPSIG00000011822POLR1D9172.650Pelodiscus_sinensis
ENSG00000186184POLR1D9766.071ENSPMGG00000010359polr1d9766.071Periophthalmus_magnuspinnatus
ENSG00000186184POLR1D9758.036ENSPMGG00000012998POLR1D9356.800Periophthalmus_magnuspinnatus
ENSG00000186184POLR1D10094.828ENSPEMG00000006336-10093.233Peromyscus_maniculatus_bairdii
ENSG00000186184POLR1D9459.633ENSPMAG00000004228polr1d9259.633Petromyzon_marinus
ENSG00000186184POLR1D9184.906ENSPCIG00000001673POLR1D9384.906Phascolarctos_cinereus
ENSG00000186184POLR1D9172.381ENSPFOG00000023343polr1d9273.750Poecilia_formosa
ENSG00000186184POLR1D9172.381ENSPLAG00000009675polr1d9272.381Poecilia_latipinna
ENSG00000186184POLR1D9172.381ENSPMEG00000004628polr1d9272.381Poecilia_mexicana
ENSG00000186184POLR1D9172.381ENSPREG00000022032polr1d9272.381Poecilia_reticulata
ENSG00000186184POLR1D10096.992ENSPCOG00000028175POLR1D10096.992Propithecus_coquereli
ENSG00000186184POLR1D9271.028ENSPNYG00000000107polr1d9471.028Pundamilia_nyererei
ENSG00000186184POLR1D8768.317ENSPNAG00000001512polr1d8767.308Pygocentrus_nattereri
ENSG00000186184POLR1D10095.690ENSRBIG00000000336-10095.489Rhinopithecus_bieti
ENSG00000186184POLR1D10099.248ENSRBIG00000036378-10099.248Rhinopithecus_bieti
ENSG00000186184POLR1D10096.552ENSRROG00000026751-10095.489Rhinopithecus_roxellana
ENSG00000186184POLR1D10099.248ENSRROG00000042232-10099.248Rhinopithecus_roxellana
ENSG00000186184POLR1D8945.378YNL113WRPC198445.378Saccharomyces_cerevisiae
ENSG00000186184POLR1D8692.105ENSSBOG00000030146-8492.105Saimiri_boliviensis_boliviensis
ENSG00000186184POLR1D10098.496ENSSBOG00000028482-10098.496Saimiri_boliviensis_boliviensis
ENSG00000186184POLR1D9878.070ENSSHAG00000001190POLR1D8878.070Sarcophilus_harrisii
ENSG00000186184POLR1D9672.072ENSSFOG00015011375polr1d9673.394Scleropages_formosus
ENSG00000186184POLR1D9268.224ENSSMAG00000011861polr1d9468.224Scophthalmus_maximus
ENSG00000186184POLR1D9267.290ENSSDUG00000011930polr1d9467.290Seriola_dumerili
ENSG00000186184POLR1D9963.478ENSSLDG00000023871polr1d9763.478Seriola_lalandi_dorsalis
ENSG00000186184POLR1D10096.992ENSSARG00000007840POLR1D10096.992Sorex_araneus
ENSG00000186184POLR1D9175.238ENSSPUG00000005786POLR1D9572.072Sphenodon_punctatus
ENSG00000186184POLR1D9172.381ENSSPAG00000011764polr1d9272.381Stegastes_partitus
ENSG00000186184POLR1D10094.828ENSSSCG00000009310POLR1D10094.737Sus_scrofa
ENSG00000186184POLR1D8376.042ENSTGUG00000005450POLR1D10076.042Taeniopygia_guttata
ENSG00000186184POLR1D9065.385ENSTRUG00000019741polr1d9165.385Takifugu_rubripes
ENSG00000186184POLR1D10095.690ENSTBEG00000007006POLR1D10095.968Tupaia_belangeri
ENSG00000186184POLR1D10098.496ENSUAMG00000011413POLR1D10098.496Ursus_americanus
ENSG00000186184POLR1D10098.276ENSUMAG00000016968POLR1D9798.387Ursus_maritimus
ENSG00000186184POLR1D10098.496ENSVVUG00000009216POLR1D10098.496Vulpes_vulpes
ENSG00000186184POLR1D8475.510ENSXCOG00000011731polr1d7575.510Xiphophorus_couchianus
ENSG00000186184POLR1D8475.510ENSXMAG00000017538polr1d7575.510Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003677DNA binding-IEAFunction
GO:0003899DNA-directed 5'-3' RNA polymerase activity-IEAFunction
GO:0005515protein binding16189514.21988832.25416956.IPIFunction
GO:0005736RNA polymerase I complex-IEAComponent
GO:0006351transcription, DNA-templated-IEAProcess
GO:0046983protein dimerization activity-IEAFunction

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