EuRBPDB

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  • Basic Information
  • Cancer Related Information

  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000187024 (Gene tree)
Gene ID
138428
Gene Symbol
PTRH1
Alias
PTH1|C9orf115
Full Name
peptidyl-tRNA hydrolase 1 homolog
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
34,526 bases
Position
chr9:127,690,348-127,724,873
Accession
27039
RBP type
canonical RBP
Summary
(Peptidyl-TRNA Hydrolase 1 Homolog) is a Protein Coding gene. Diseases associated with PTRH1 include Early Infantile Epileptic Encephalopathy. Gene Ontology (GO) annotations related to this gene include aminoacyl-tRNA hydrolase activity.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000418661Pept_tRNA_hydroPF01195.191.3e-3811
ENSP00000439469Pept_tRNA_hydroPF01195.191.3e-3811
ENSP00000485347Pept_tRNA_hydroPF01195.195.2e-2611
ENSP00000418219Pept_tRNA_hydroPF01195.194e-1811
ENSP00000485367Pept_tRNA_hydroPF01195.191e-1411
ENSP00000485479Pept_tRNA_hydroPF01195.192.2e-0811
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000414832PTRH1-202569XM_024447415ENSP00000485479162 (aa)XP_024303183A0A096LPA3
ENST00000423807PTRH1-2051570-ENSP00000418219182 (aa)-C9J7Z1
ENST00000641641PTRH1-209510-ENSP0000049292135 (aa)-A0A286YER0
ENST00000419060PTRH1-2042692-ENSP00000418661214 (aa)-Q86Y79
ENST00000543175PTRH1-208814XM_017014276ENSP00000439469214 (aa)XP_016869765Q86Y79
ENST00000416214PTRH1-203424-ENSP00000485367137 (aa)-A0A096LP34
ENST00000429848PTRH1-206901--- (aa)--
ENST00000335223PTRH1-201759-ENSP00000493136159 (aa)-A0A286YF52
ENST00000456267PTRH1-207645-ENSP00000485347172 (aa)-A0A096LP22
Gene Model
Click here to download ENSG00000187024's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000187024's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000187024PTRH19651.142ENSAPOG00000000947PTRH17851.142Acanthochromis_polyacanthus
ENSG00000187024PTRH19651.142ENSAPOG00000010719ptrh17851.142Acanthochromis_polyacanthus
ENSG00000187024PTRH19651.142ENSAPOG00000003014-7851.142Acanthochromis_polyacanthus
ENSG00000187024PTRH19880.383ENSAMEG00000016791PTRH110080.383Ailuropoda_melanoleuca
ENSG00000187024PTRH18057.895ENSACIG00000006734ptrh17357.895Amphilophus_citrinellus
ENSG00000187024PTRH19352.358ENSAOCG00000009725ptrh17552.358Amphiprion_ocellaris
ENSG00000187024PTRH19352.358ENSAPEG00000020993ptrh17552.358Amphiprion_percula
ENSG00000187024PTRH19747.826ENSATEG00000010003ptrh17650.704Anabas_testudineus
ENSG00000187024PTRH110092.523ENSANAG00000025547PTRH110092.523Aotus_nancymaae
ENSG00000187024PTRH18753.769ENSACLG00000025462ptrh17655.959Astatotilapia_calliptera
ENSG00000187024PTRH18356.497ENSAMXG00000034117ptrh16656.497Astyanax_mexicanus
ENSG00000187024PTRH19781.955ENSBTAG00000012736PTRH17965.471Bos_taurus
ENSG00000187024PTRH110092.308ENSCJAG00000019841PTRH110092.308Callithrix_jacchus
ENSG00000187024PTRH19981.776ENSCAFG00000020123PTRH19981.776Canis_familiaris
ENSG00000187024PTRH19982.160ENSCAFG00020015776PTRH19682.160Canis_lupus_dingo
ENSG00000187024PTRH19885.238ENSCHIG00000008188PTRH19885.238Capra_hircus
ENSG00000187024PTRH16486.957ENSCAPG00000015926PTRH19986.957Cavia_aperea
ENSG00000187024PTRH19981.690ENSCPOG00000023968PTRH19981.690Cavia_porcellus
ENSG00000187024PTRH110094.393ENSCCAG00000023134PTRH110094.393Cebus_capucinus
ENSG00000187024PTRH110098.598ENSCATG00000042852PTRH110098.598Cercocebus_atys
ENSG00000187024PTRH110084.579ENSCLAG00000011155PTRH110084.579Chinchilla_lanigera
ENSG00000187024PTRH110098.598ENSCSAG00000013748PTRH19498.598Chlorocebus_sabaeus
ENSG00000187024PTRH17758.182ENSCPBG00000025207PTRH19458.182Chrysemys_picta_bellii
ENSG00000187024PTRH110097.664ENSCANG00000039856PTRH110097.664Colobus_angolensis_palliatus
ENSG00000187024PTRH19479.703ENSCGRG00001013108Ptrh19979.703Cricetulus_griseus_chok1gshd
ENSG00000187024PTRH18582.873ENSCGRG00000016553Ptrh19982.873Cricetulus_griseus_crigri
ENSG00000187024PTRH18156.647ENSCSEG00000010332ptrh16356.647Cynoglossus_semilaevis
ENSG00000187024PTRH17457.843ENSCVAG00000003873-9153.191Cyprinodon_variegatus
ENSG00000187024PTRH18555.782ENSCVAG00000010701ptrh17550.246Cyprinodon_variegatus
ENSG00000187024PTRH18454.144ENSDARG00000098206ptrh17954.144Danio_rerio
ENSG00000187024PTRH110083.178ENSDNOG00000024194PTRH110083.178Dasypus_novemcinctus
ENSG00000187024PTRH110086.047ENSDORG00000013321Ptrh110086.047Dipodomys_ordii
ENSG00000187024PTRH110087.850ENSEASG00005020466PTRH110087.850Equus_asinus_asinus
ENSG00000187024PTRH110089.252ENSECAG00000007615PTRH17989.252Equus_caballus
ENSG00000187024PTRH18355.367ENSELUG00000015467ptrh16655.367Esox_lucius
ENSG00000187024PTRH19882.381ENSFCAG00000001483PTRH19982.381Felis_catus
ENSG00000187024PTRH18554.688ENSFALG00000001352PTRH19154.688Ficedula_albicollis
ENSG00000187024PTRH19584.236ENSFDAG00000020077PTRH19984.236Fukomys_damarensis
ENSG00000187024PTRH18955.497ENSFHEG00000010590ptrh17355.497Fundulus_heteroclitus
ENSG00000187024PTRH19146.269ENSGMOG00000009801PTRH19750.000Gadus_morhua
ENSG00000187024PTRH19753.365ENSGAFG00000016215ptrh18753.365Gambusia_affinis
ENSG00000187024PTRH19150.000ENSGACG00000014682ptrh19055.233Gasterosteus_aculeatus
ENSG00000187024PTRH19659.512ENSGAGG00000022860PTRH19259.512Gopherus_agassizii
ENSG00000187024PTRH110099.533ENSGGOG00000011033PTRH110099.533Gorilla_gorilla
ENSG00000187024PTRH19749.275ENSHBUG00000020824ptrh17651.643Haplochromis_burtoni
ENSG00000187024PTRH19385.930ENSHGLG00000019147PTRH19885.930Heterocephalus_glaber_female
ENSG00000187024PTRH19381.818ENSHGLG00100003681PTRH110081.818Heterocephalus_glaber_male
ENSG00000187024PTRH19451.174ENSHCOG00000014772ptrh18250.698Hippocampus_comes
ENSG00000187024PTRH18356.742ENSIPUG00000015364ptrh17056.742Ictalurus_punctatus
ENSG00000187024PTRH19388.000ENSSTOG00000008942PTRH19388.000Ictidomys_tridecemlineatus
ENSG00000187024PTRH110085.981ENSJJAG00000014338Ptrh19889.055Jaculus_jaculus
ENSG00000187024PTRH18556.906ENSKMAG00000003253ptrh16656.906Kryptolebias_marmoratus
ENSG00000187024PTRH18353.509ENSLBEG00000028842ptrh17559.524Labrus_bergylta
ENSG00000187024PTRH19058.031ENSLACG00000016741PTRH17958.031Latimeria_chalumnae
ENSG00000187024PTRH19485.222ENSLAFG00000021934PTRH19985.222Loxodonta_africana
ENSG00000187024PTRH110098.598ENSMFAG00000001700PTRH110098.598Macaca_fascicularis
ENSG00000187024PTRH110098.598ENSMMUG00000016424PTRH110098.598Macaca_mulatta
ENSG00000187024PTRH110098.598ENSMNEG00000033061PTRH110097.253Macaca_nemestrina
ENSG00000187024PTRH15099.074ENSMLEG00000042412-10099.074Mandrillus_leucophaeus
ENSG00000187024PTRH18951.707ENSMAMG00000017386ptrh18151.131Mastacembelus_armatus
ENSG00000187024PTRH17958.824ENSMZEG00005020001ptrh17355.978Maylandia_zebra
ENSG00000187024PTRH19480.693ENSMAUG00000006266Ptrh19980.693Mesocricetus_auratus
ENSG00000187024PTRH19989.202ENSMICG00000005611PTRH19989.202Microcebus_murinus
ENSG00000187024PTRH19384.422ENSMOCG00000013992Ptrh19884.422Microtus_ochrogaster
ENSG00000187024PTRH18257.386ENSMMOG00000014747ptrh16854.124Mola_mola
ENSG00000187024PTRH19767.150ENSMODG00000005503PTRH19567.150Monodelphis_domestica
ENSG00000187024PTRH15955.556ENSMALG00000005392ptrh17455.556Monopterus_albus
ENSG00000187024PTRH19384.422MGP_CAROLIEiJ_G0023450Ptrh19884.422Mus_caroli
ENSG00000187024PTRH19384.925ENSMUSG00000053746Ptrh19884.925Mus_musculus
ENSG00000187024PTRH19384.422MGP_PahariEiJ_G0024907Ptrh19884.422Mus_pahari
ENSG00000187024PTRH19384.422MGP_SPRETEiJ_G0024367Ptrh19884.422Mus_spretus
ENSG00000187024PTRH19781.340ENSMPUG00000013790PTRH19781.340Mustela_putorius_furo
ENSG00000187024PTRH19682.949ENSMLUG00000013454PTRH19882.949Myotis_lucifugus
ENSG00000187024PTRH19984.434ENSNGAG00000014008Ptrh19987.065Nannospalax_galili
ENSG00000187024PTRH18753.769ENSNBRG00000015590ptrh17751.402Neolamprologus_brichardi
ENSG00000187024PTRH110098.598ENSNLEG00000017468PTRH110098.598Nomascus_leucogenys
ENSG00000187024PTRH19149.744ENSMEUG00000009694-9649.744Notamacropus_eugenii
ENSG00000187024PTRH19885.238ENSODEG00000004012PTRH19984.762Octodon_degus
ENSG00000187024PTRH19748.551ENSONIG00000013912ptrh18250.935Oreochromis_niloticus
ENSG00000187024PTRH19166.497ENSOANG00000011891PTRH18766.497Ornithorhynchus_anatinus
ENSG00000187024PTRH19888.517ENSOCUG00000006894PTRH19088.517Oryctolagus_cuniculus
ENSG00000187024PTRH19888.517ENSOGAG00000008094PTRH110088.517Otolemur_garnettii
ENSG00000187024PTRH19873.636ENSOARG00000011808PTRH19973.636Ovis_aries
ENSG00000187024PTRH1100100.000ENSPPAG00000041782PTRH1100100.000Pan_paniscus
ENSG00000187024PTRH19983.886ENSPPRG00000007889PTRH19983.886Panthera_pardus
ENSG00000187024PTRH15689.167ENSPTIG00000021082-9489.167Panthera_tigris_altaica
ENSG00000187024PTRH1100100.000ENSPTRG00000021394PTRH1100100.000Pan_troglodytes
ENSG00000187024PTRH110086.175ENSPANG00000031755PTRH110086.175Papio_anubis
ENSG00000187024PTRH18952.105ENSPKIG00000005449ptrh16352.105Paramormyrops_kingsleyae
ENSG00000187024PTRH19358.081ENSPSIG00000013828PTRH17258.081Pelodiscus_sinensis
ENSG00000187024PTRH17954.706ENSPMGG00000002148ptrh16254.913Periophthalmus_magnuspinnatus
ENSG00000187024PTRH19480.198ENSPEMG00000014360Ptrh19980.198Peromyscus_maniculatus_bairdii
ENSG00000187024PTRH19652.683ENSPFOG00000003715ptrh17752.683Poecilia_formosa
ENSG00000187024PTRH19852.632ENSPLAG00000023354ptrh18352.632Poecilia_latipinna
ENSG00000187024PTRH19652.683ENSPMEG00000000447ptrh17752.683Poecilia_mexicana
ENSG00000187024PTRH19652.683ENSPREG00000012612ptrh17752.683Poecilia_reticulata
ENSG00000187024PTRH110094.393ENSPPYG00000019628PTRH19494.393Pongo_abelii
ENSG00000187024PTRH19986.916ENSPCAG00000007016PTRH19986.916Procavia_capensis
ENSG00000187024PTRH19990.141ENSPCOG00000014541PTRH19990.141Propithecus_coquereli
ENSG00000187024PTRH19890.000ENSPVAG00000000954PTRH19890.000Pteropus_vampyrus
ENSG00000187024PTRH18753.266ENSPNYG00000007789ptrh17750.698Pundamilia_nyererei
ENSG00000187024PTRH18357.062ENSPNAG00000029930ptrh16757.062Pygocentrus_nattereri
ENSG00000187024PTRH19382.412ENSRNOG00000049034Ptrh19882.412Rattus_norvegicus
ENSG00000187024PTRH110098.131ENSRBIG00000027290PTRH110098.131Rhinopithecus_bieti
ENSG00000187024PTRH110098.131ENSRROG00000028799PTRH110096.703Rhinopithecus_roxellana
ENSG00000187024PTRH17031.200YHR189WPTH16531.200Saccharomyces_cerevisiae
ENSG00000187024PTRH110094.393ENSSBOG00000026699PTRH110093.407Saimiri_boliviensis_boliviensis
ENSG00000187024PTRH18668.783ENSSHAG00000018238PTRH19268.783Sarcophilus_harrisii
ENSG00000187024PTRH18757.732ENSSFOG00015007053ptrh19657.732Scleropages_formosus
ENSG00000187024PTRH18454.301ENSSMAG00000016747ptrh17954.301Scophthalmus_maximus
ENSG00000187024PTRH18056.934ENSSDUG00000013471ptrh19453.448Seriola_dumerili
ENSG00000187024PTRH17558.642ENSSLDG00000024662ptrh18155.435Seriola_lalandi_dorsalis
ENSG00000187024PTRH19160.309ENSSPUG00000000040PTRH18560.309Sphenodon_punctatus
ENSG00000187024PTRH19352.358ENSSPAG00000003298ptrh19057.143Stegastes_partitus
ENSG00000187024PTRH19690.244ENSSSCG00000005615PTRH19690.244Sus_scrofa
ENSG00000187024PTRH17466.929ENSTGUG00000003648PTRH110068.657Taeniopygia_guttata
ENSG00000187024PTRH17955.882ENSTRUG00000019801PTRH16754.144Takifugu_rubripes
ENSG00000187024PTRH18257.386ENSTNIG00000016735ptrh17857.386Tetraodon_nigroviridis
ENSG00000187024PTRH17295.699ENSTBEG00000001921-6889.524Tupaia_belangeri
ENSG00000187024PTRH19683.495ENSTTRG00000016458PTRH19683.495Tursiops_truncatus
ENSG00000187024PTRH18177.477ENSUAMG00000003090-8882.692Ursus_americanus
ENSG00000187024PTRH19884.689ENSUAMG00000023948-9484.689Ursus_americanus
ENSG00000187024PTRH18571.429ENSVPAG00000001805PTRH110071.429Vicugna_pacos
ENSG00000187024PTRH19982.629ENSVVUG00000013198PTRH19682.629Vulpes_vulpes
ENSG00000187024PTRH18357.303ENSXETG00000009980ptrh19557.303Xenopus_tropicalis
ENSG00000187024PTRH19352.500ENSXCOG00000011498ptrh19150.467Xiphophorus_couchianus
ENSG00000187024PTRH19651.220ENSXMAG00000009256ptrh17751.220Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.HDAFunction
GO:0004045aminoacyl-tRNA hydrolase activity21873635.IBAFunction
GO:0005515protein binding25416956.IPIFunction

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
BLCAchr91277162635'UTRnovel0.61
BLCAchr9127714189Missense_MutationnovelE186K0.28
BLCAchr91277139313'UTRnovel0.39
BRCAchr91277161975'UTRnovel0.16
BRCAchr91277160225'UTRnovel0.23
BRCAchr9127715567Missense_MutationNAR25C0.15
BRCAchr91277162175'UTRnovel0.38
CESCchr91277158665'UTRnovel0.4
CESCchr9127714413Missense_MutationnovelG143A0.19
CESCchr91277162325'UTRnovel0.4
CESCchr9127714156Missense_Mutationrs781266875D197N0.31
CESCchr9127714165Nonsense_MutationnovelR194*0.7
COADchr9127715560Frame_Shift_DelnovelP27Rfs*690.17
COADchr91277162705'UTRrs5753457750.24
COADchr9127724729Splice_Regionnovel0.29
COADchr9127715495Intronnovel0.07
COADchr91277162705'UTRrs5753457750.25
COADchr9127714156Missense_Mutationrs781266875D197N0.22
ESCAchr91277162295'UTRnovel0.07
ESCAchr91277167175'UTRnovel0.23
GBMchr9127714236Missense_MutationnovelE170V0.18
HNSCchr91277140523'UTRnovel0.43
HNSCchr91277160195'UTRnovel0.13
HNSCchr9127714169SilentnovelL192L0.11
HNSCchr91277167385'UTRnovel0.6
KICHchr9127715537Splice_Regionnovel0.87
KIRCchr91277140003'UTRnovel0.27
KIRPchr9127715527Intronnovel0.43
KIRPchr9127714113Nonsense_MutationnovelS211*0.32
LGGchr91277159865'UTRnovel0.37
LIHCchr91277156825'UTRnovel0.46
LUADchr91277159595'UTRnovel0.21
LUADchr91277160435'UTRnovel0.09
LUADchr9127714237Nonsense_MutationnovelE170*0.27
LUADchr9127716961Splice_SiteNA0.07
PAADchr91277140893'UTRrs7468288100.24
PRADchr9127715576SilentNAL22L0.33
SARCchr9127714266Missense_MutationNAR160Q0.07
SARCchr91277167325'UTRnovel0.44
SKCMchr9127715591Missense_Mutationrs752466662M17L0.2
SKCMchr91277167875'UTRnovel0.38
SKCMchr91277160575'UTRnovel0.9
SKCMchr91277168315'UTRnovel0.42
SKCMchr9127714158Missense_MutationNAT196I0.8
SKCMchr9127714642Missense_Mutationrs776316995P126L0.39
STADchr91277139573'UTRnovel0.32
STADchr91277139763'UTRnovel0.29
STADchr91277162925'UTRnovel0.32
STADchr9127714123Missense_MutationNAQ208K0.29
THCAchr91277156485'UTRrs3679574090.14
UCECchr91277167175'UTRnovel0.45
UCECchr9127714246Missense_MutationnovelA167S0.54
UCECchr9127715587Missense_MutationnovelS18N0.3
UCECchr91277156765'UTRnovel0.3
UCECchr91277159875'UTRnovel0.42
UCECchr9127714246Missense_MutationnovelA167T0.31
UCECchr91277163565'UTRnovel0.43
UCECchr9127715459Intronnovel0.45
UCECchr91277160335'UTRnovel0.11
UCECchr91277166765'UTRnovel0.63
UCECchr91277167645'UTRnovel0.25
UCECchr91277167355'UTRnovel0.22
UCECchr91277159315'UTRnovel0.4
UCSchr91277139713'UTRnovel0.39

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
CHOLDEL0.41670.067545
LAMLDEL0.00520.24147
LGGAMP0.06040.21332
LIHCDEL0.24860.12467
PRADAMP0.08330.059049
THCADEL0.04010.24038
THYMDEL0.01630.022012
UCSDEL0.55360.089783

Survival Analysis
CancerP-value Q-value
THYM0.0087

Kaplan-Meier Survival Analysis

STAD0.00012

Kaplan-Meier Survival Analysis

SARC0.028

Kaplan-Meier Survival Analysis

MESO0.034

Kaplan-Meier Survival Analysis

ACC0.0078

Kaplan-Meier Survival Analysis

HNSC0.05

Kaplan-Meier Survival Analysis

PRAD0.035

Kaplan-Meier Survival Analysis

LUSC0.03

Kaplan-Meier Survival Analysis

COAD0.003

Kaplan-Meier Survival Analysis

PAAD0.033

Kaplan-Meier Survival Analysis

UCEC0.021

Kaplan-Meier Survival Analysis

LGG0.0025

Kaplan-Meier Survival Analysis

LUAD0.0011

Kaplan-Meier Survival Analysis

OV0.003

Kaplan-Meier Survival Analysis


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