EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000187742 (Gene tree)
Gene ID
79048
Gene Symbol
SECISBP2
Alias
SBP2
Full Name
SECIS binding protein 2
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
48,645 bases
Position
chr9:89,318,473-89,367,117
Accession
30972
RBP type
canonical RBP
Summary
The protein encoded by this gene is one of the essential components of the machinery involved in co-translational insertion of selenocysteine (Sec) into selenoproteins. Sec is encoded by the UGA codon, which normally signals translation termination. The recoding of UGA as Sec codon requires a Sec insertion sequence (SECIS) element; present in the 3' untranslated regions of eukaryotic selenoprotein mRNAs. This protein specifically binds to the SECIS element, which is stimulated by a Sec-specific translation elongation factor. Mutations in this gene have been associated with reduction in enzymatic activity of type II iodothyronine deiodinase (a selenoprotein) and abnormal thyroid hormone metabolism. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Aug 2017]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000364959Ribosomal_L7AePF01248.263.4e-2111
ENSP00000436650Ribosomal_L7AePF01248.263.5e-2111
ENSP00000364965Ribosomal_L7AePF01248.264e-2111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
18948268A novel protein domain induces high affinity selenocysteine insertion sequence binding and elongation factor recruitment.J Biol Chem2008 Dec 12Donovan Jdoi: 10.1074/jbc.M806008200
12403468The SBP2 and 15.5 kD/Snu13p proteins share the same RNA binding domain: identification of SBP2 amino acids important to SECIS RNA binding.RNA2002 OctAllmang C-
10464275Purification, redox sensitivity, and RNA binding properties of SECIS-binding protein 2, a protein involved in selenoprotein biosynthesis.J Biol Chem1999 Sep 3Copeland PR-
19106619Known turnover and translation regulatory RNA-binding proteins interact with the 3' UTR of SECIS-binding protein 2.RNA Biol2009 Jan-MarBubenik JL-
17636016The L7Ae RNA binding motif is a multifunctional domain required for the ribosome-dependent Sec incorporation activity of Sec insertion sequence binding protein 2.Mol Cell Biol2007 SepCaban K-
17332014An improved definition of the RNA-binding specificity of SECIS-binding protein 2, an essential component of the selenocysteine incorporation machinery.Nucleic Acids Res2007Clery A-
17901054Altered RNA binding activity underlies abnormal thyroid hormone metabolism linked to a mutation in selenocysteine insertion sequence-binding protein 2.J Biol Chem2007 Nov 30Bubenik JL-
27956496The RNA-binding protein Secisbp2 differentially modulates UGA codon reassignment and RNA decay.Nucleic Acids Res2017 Apr 20Fradejas-Villar Ndoi: 10.1093/nar/gkw1255.
31225282-----
31350336Ribosome profiling of selenoproteins in vivo reveals consequences of pathogenic Secisbp2 missense mutations.J Biol Chem2019 Jul 26Zhao Wdoi: 10.1074/jbc.RA119.009369
12370018Protein factors mediating selenoprotein synthesis.Curr Protein Pept Sci2002 FebLescure A-
12095701cDNA cloning, expression pattern and RNA binding analysis of human selenocysteine insertion sequence (SECIS) binding protein 2.Gene2002 May 29Lescure A-
11680849The selenocysteine incorporation machinery: interactions between the SECIS RNA and the SECIS-binding protein SBP2.RNA2001 OctFletcher JE-
16416259Size matters: a view of selenocysteine incorporation from the ribosome.Cell Mol Life Sci2006 JanCaban K-
10637234A novel RNA binding protein, SBP2, is required for the translation of mammalian selenoprotein mRNAs.EMBO J2000 Jan 17Copeland PR-
16131320Selenoprotein synthesis: a unique translational mechanism used by a diverse family of proteins.Thyroid2005 AugHoffmann PR-
19744324Evolutionary history of selenocysteine incorporation from the perspective of SECIS binding proteins.BMC Evol Biol2009 Sep 10Donovan Jdoi: 10.1186/1471-2148-9-229.
19467292SECIS-binding protein 2, a key player in selenoprotein synthesis, is an intrinsically disordered protein.Biochimie2009 AugOlieric Vdoi: 10.1016/j.biochi.2009.05.004
17846120SBP2 binding affinity is a major determinant in differential selenoprotein mRNA translation and sensitivity to nonsense-mediated decay.Mol Cell Biol2007 NovSquires JE-
16962588Identification and characterization of selenoprotein K: an antioxidant in cardiomyocytes.FEBS Lett2006 Oct 2Lu C-
24817701Adjustments, extinction, and remains of selenocysteine incorporation machinery in the nematode lineage.RNA2014 JulOtero Ldoi: 10.1261/rna.043877.113
19223320A short motif in Drosophila SECIS Binding Protein 2 provides differential binding affinity to SECIS RNA hairpins.Nucleic Acids Res2009 AprTakeuchi Adoi: 10.1093/nar/gkp078
25692238Characterization of the UGA-recoding and SECIS-binding activities of SECIS-binding protein 2.RNA Biol2014Bubenik JLdoi: 10.1080/15476286.2014.996472.
16508009Supramolecular complexes mediate selenocysteine incorporation in vivo.Mol Cell Biol2006 MarSmall-Howard A-
16155186Characterization of the SECIS binding protein 2 complex required for the co-translational insertion of selenocysteine in mammals.Nucleic Acids Res2005 Sep 9Kinzy SA-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000498819SECISBP2-208854--- (aa)--
ENST00000375807SECISBP2-2023462XM_017015122ENSP00000364965854 (aa)XP_016870611Q96T21
ENST00000496597SECISBP2-2071195--- (aa)--
ENST00000470305SECISBP2-2055405--- (aa)--
ENST00000477484SECISBP2-206617--- (aa)--
ENST00000425851SECISBP2-203826-ENSP00000414288275 (aa)-Q5HYY5
ENST00000534113SECISBP2-2093584XM_011519000ENSP00000436650786 (aa)XP_011517302Q96T21
ENST00000440898SECISBP2-204547-ENSP0000041157360 (aa)-Q4V370
ENST00000339901SECISBP2-2013320XM_006717282ENSP00000364959781 (aa)XP_006717345Q96T21
Gene Model
Click here to download ENSG00000187742's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000187742Glomerular Filtration Rate1.9851561E-005-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000187742's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000187742SECISBP25749.284ENSAPOG00000005939secisbp26048.760Acanthochromis_polyacanthus
ENSG00000187742SECISBP210072.166ENSAMEG00000003349SECISBP29972.973Ailuropoda_melanoleuca
ENSG00000187742SECISBP25449.065ENSACIG00000024185secisbp26558.480Amphilophus_citrinellus
ENSG00000187742SECISBP25749.299ENSAOCG00000019052secisbp26148.795Amphiprion_ocellaris
ENSG00000187742SECISBP25748.297ENSAPEG00000012971secisbp26147.791Amphiprion_percula
ENSG00000187742SECISBP25749.296ENSATEG00000001095secisbp26248.805Anabas_testudineus
ENSG00000187742SECISBP29943.017ENSAPLG00000013053SECISBP210042.710Anas_platyrhynchos
ENSG00000187742SECISBP29243.793ENSACAG00000016594SECISBP29443.908Anolis_carolinensis
ENSG00000187742SECISBP210092.632ENSANAG00000028208SECISBP210092.632Aotus_nancymaae
ENSG00000187742SECISBP25849.495ENSACLG00000019976secisbp26248.988Astatotilapia_calliptera
ENSG00000187742SECISBP25749.190ENSAMXG00000015953secisbp26248.185Astyanax_mexicanus
ENSG00000187742SECISBP210076.539ENSBTAG00000001939SECISBP210080.000Bos_taurus
ENSG00000187742SECISBP210093.333ENSCJAG00000007806SECISBP210093.333Callithrix_jacchus
ENSG00000187742SECISBP210076.682ENSCAFG00000002188SECISBP210076.682Canis_familiaris
ENSG00000187742SECISBP210076.419ENSCAFG00020007224SECISBP29976.706Canis_lupus_dingo
ENSG00000187742SECISBP210076.190ENSCHIG00000010657SECISBP29976.190Capra_hircus
ENSG00000187742SECISBP210077.863ENSTSYG00000014119SECISBP210078.626Carlito_syrichta
ENSG00000187742SECISBP29078.364ENSCAPG00000008522SECISBP29978.075Cavia_aperea
ENSG00000187742SECISBP210075.029ENSCPOG00000014270SECISBP210075.029Cavia_porcellus
ENSG00000187742SECISBP210092.982ENSCCAG00000013350SECISBP210092.982Cebus_capucinus
ENSG00000187742SECISBP210096.028ENSCATG00000008304SECISBP210096.028Cercocebus_atys
ENSG00000187742SECISBP210076.690ENSCLAG00000001166SECISBP29676.690Chinchilla_lanigera
ENSG00000187742SECISBP210096.028ENSCSAG00000007310SECISBP210096.028Chlorocebus_sabaeus
ENSG00000187742SECISBP29278.788ENSCHOG00000011084SECISBP28378.788Choloepus_hoffmanni
ENSG00000187742SECISBP25855.010ENSCPBG00000005608SECISBP29955.206Chrysemys_picta_bellii
ENSG00000187742SECISBP210095.305ENSCANG00000034551SECISBP210095.305Colobus_angolensis_palliatus
ENSG00000187742SECISBP210070.047ENSCGRG00001013930Secisbp210070.047Cricetulus_griseus_chok1gshd
ENSG00000187742SECISBP210070.047ENSCGRG00000002600Secisbp210070.047Cricetulus_griseus_crigri
ENSG00000187742SECISBP25652.212ENSCVAG00000015876secisbp25851.663Cyprinodon_variegatus
ENSG00000187742SECISBP25948.665ENSDARG00000073892secisbp28548.041Danio_rerio
ENSG00000187742SECISBP210079.535ENSDNOG00000009432SECISBP210079.535Dasypus_novemcinctus
ENSG00000187742SECISBP210077.209ENSDORG00000023182Secisbp210077.209Dipodomys_ordii
ENSG00000187742SECISBP29278.788ENSETEG00000001262SECISBP29278.788Echinops_telfairi
ENSG00000187742SECISBP210076.779ENSEASG00005013960SECISBP210076.779Equus_asinus_asinus
ENSG00000187742SECISBP210077.130ENSECAG00000015868SECISBP210077.130Equus_caballus
ENSG00000187742SECISBP210070.698ENSEEUG00000004400SECISBP210070.664Erinaceus_europaeus
ENSG00000187742SECISBP210071.212ENSFCAG00000004214SECISBP210072.028Felis_catus
ENSG00000187742SECISBP29942.794ENSFALG00000012441SECISBP29442.731Ficedula_albicollis
ENSG00000187742SECISBP210076.650ENSFDAG00000021183SECISBP29676.546Fukomys_damarensis
ENSG00000187742SECISBP25747.262ENSFHEG00000004095secisbp26246.748Fundulus_heteroclitus
ENSG00000187742SECISBP29943.696ENSGALG00000010694SECISBP29643.370Gallus_gallus
ENSG00000187742SECISBP25649.138ENSGAFG00000016947secisbp26048.596Gambusia_affinis
ENSG00000187742SECISBP25751.183ENSGACG00000013757secisbp27550.862Gasterosteus_aculeatus
ENSG00000187742SECISBP210098.830ENSGGOG00000000453SECISBP210098.830Gorilla_gorilla
ENSG00000187742SECISBP25154.321ENSHBUG00000007014secisbp29653.563Haplochromis_burtoni
ENSG00000187742SECISBP210078.530ENSHGLG00000014380SECISBP29678.530Heterocephalus_glaber_female
ENSG00000187742SECISBP210078.646ENSHGLG00100006953SECISBP29678.646Heterocephalus_glaber_male
ENSG00000187742SECISBP25052.488ENSHCOG00000008010secisbp25652.488Hippocampus_comes
ENSG00000187742SECISBP25849.398ENSIPUG00000015393secisbp26248.692Ictalurus_punctatus
ENSG00000187742SECISBP210080.326ENSSTOG00000000921SECISBP210080.326Ictidomys_tridecemlineatus
ENSG00000187742SECISBP210071.842ENSJJAG00000020492Secisbp210071.842Jaculus_jaculus
ENSG00000187742SECISBP25749.293ENSKMAG00000007129secisbp26449.190Kryptolebias_marmoratus
ENSG00000187742SECISBP28341.690ENSLBEG00000026023secisbp28241.890Labrus_bergylta
ENSG00000187742SECISBP25655.106ENSLACG00000005735SECISBP28754.641Latimeria_chalumnae
ENSG00000187742SECISBP25749.896ENSLOCG00000011742secisbp28049.792Lepisosteus_oculatus
ENSG00000187742SECISBP210072.769ENSLAFG00000012998SECISBP210072.769Loxodonta_africana
ENSG00000187742SECISBP210096.262ENSMFAG00000003045SECISBP210096.262Macaca_fascicularis
ENSG00000187742SECISBP210096.262ENSMMUG00000012532SECISBP210096.262Macaca_mulatta
ENSG00000187742SECISBP210096.028ENSMNEG00000031737SECISBP210096.028Macaca_nemestrina
ENSG00000187742SECISBP210095.685ENSMLEG00000028868SECISBP210095.685Mandrillus_leucophaeus
ENSG00000187742SECISBP25647.639ENSMAMG00000006644secisbp27839.403Mastacembelus_armatus
ENSG00000187742SECISBP25849.495ENSMZEG00005013614secisbp26248.988Maylandia_zebra
ENSG00000187742SECISBP210069.231ENSMAUG00000008659Secisbp210069.231Mesocricetus_auratus
ENSG00000187742SECISBP210086.114ENSMICG00000001176SECISBP210086.114Microcebus_murinus
ENSG00000187742SECISBP210071.445ENSMOCG00000000616Secisbp210071.445Microtus_ochrogaster
ENSG00000187742SECISBP210056.326ENSMODG00000013365SECISBP210057.317Monodelphis_domestica
ENSG00000187742SECISBP25848.323ENSMALG00000004907secisbp28640.028Monopterus_albus
ENSG00000187742SECISBP210071.312MGP_CAROLIEiJ_G0018518Secisbp210071.312Mus_caroli
ENSG00000187742SECISBP210071.926ENSMUSG00000035139Secisbp210071.926Mus_musculus
ENSG00000187742SECISBP210071.013MGP_PahariEiJ_G0019584Secisbp210071.013Mus_pahari
ENSG00000187742SECISBP210071.857MGP_SPRETEiJ_G0019399Secisbp210071.857Mus_spretus
ENSG00000187742SECISBP27174.194ENSMPUG00000008495-10074.194Mustela_putorius_furo
ENSG00000187742SECISBP210074.340ENSMLUG00000012348SECISBP210074.246Myotis_lucifugus
ENSG00000187742SECISBP210073.310ENSNGAG00000002364Secisbp210073.310Nannospalax_galili
ENSG00000187742SECISBP25850.305ENSNBRG00000022804secisbp26249.593Neolamprologus_brichardi
ENSG00000187742SECISBP210097.205ENSNLEG00000008739SECISBP210097.205Nomascus_leucogenys
ENSG00000187742SECISBP25358.824ENSMEUG00000003854-5958.824Notamacropus_eugenii
ENSG00000187742SECISBP29666.048ENSOPRG00000007588SECISBP29965.371Ochotona_princeps
ENSG00000187742SECISBP210074.883ENSODEG00000000675SECISBP210074.883Octodon_degus
ENSG00000187742SECISBP25852.838ENSONIG00000016931secisbp29954.156Oreochromis_niloticus
ENSG00000187742SECISBP210078.200ENSOCUG00000012932SECISBP210078.322Oryctolagus_cuniculus
ENSG00000187742SECISBP25749.372ENSORLG00000000343secisbp27248.847Oryzias_latipes
ENSG00000187742SECISBP25748.632ENSORLG00020012878secisbp27048.101Oryzias_latipes_hni
ENSG00000187742SECISBP25749.791ENSORLG00015004559secisbp26349.686Oryzias_latipes_hsok
ENSG00000187742SECISBP25749.673ENSOMEG00000008595secisbp26349.345Oryzias_melastigma
ENSG00000187742SECISBP210084.364ENSOGAG00000000317SECISBP29784.364Otolemur_garnettii
ENSG00000187742SECISBP210076.009ENSOARG00000007741SECISBP210076.009Ovis_aries
ENSG00000187742SECISBP210099.181ENSPPAG00000012385SECISBP210099.181Pan_paniscus
ENSG00000187742SECISBP210071.445ENSPPRG00000023911SECISBP210072.261Panthera_pardus
ENSG00000187742SECISBP210064.304ENSPTIG00000009781SECISBP210065.248Panthera_tigris_altaica
ENSG00000187742SECISBP210099.064ENSPTRG00000021094SECISBP210099.064Pan_troglodytes
ENSG00000187742SECISBP210095.911ENSPANG00000024873SECISBP210095.911Papio_anubis
ENSG00000187742SECISBP29645.400ENSPSIG00000016257SECISBP29946.537Pelodiscus_sinensis
ENSG00000187742SECISBP210073.543ENSPEMG00000020212Secisbp210073.543Peromyscus_maniculatus_bairdii
ENSG00000187742SECISBP210058.333ENSPCIG00000010304SECISBP210058.111Phascolarctos_cinereus
ENSG00000187742SECISBP25950.106ENSPFOG00000008146secisbp27549.364Poecilia_formosa
ENSG00000187742SECISBP25353.191ENSPLAG00000004505secisbp29452.370Poecilia_latipinna
ENSG00000187742SECISBP25947.390ENSPMEG00000013702secisbp26346.881Poecilia_mexicana
ENSG00000187742SECISBP25748.428ENSPREG00000008117secisbp26247.899Poecilia_reticulata
ENSG00000187742SECISBP210098.012ENSPPYG00000019359SECISBP210098.012Pongo_abelii
ENSG00000187742SECISBP210062.126ENSPCAG00000000559-8066.617Procavia_capensis
ENSG00000187742SECISBP210085.181ENSPCOG00000013354SECISBP210085.181Propithecus_coquereli
ENSG00000187742SECISBP29377.528ENSPVAG00000011013SECISBP29077.528Pteropus_vampyrus
ENSG00000187742SECISBP25849.495ENSPNYG00000016799secisbp26248.988Pundamilia_nyererei
ENSG00000187742SECISBP25649.692ENSPNAG00000029922secisbp26548.967Pygocentrus_nattereri
ENSG00000187742SECISBP210071.911ENSRNOG00000013773Secisbp210071.911Rattus_norvegicus
ENSG00000187742SECISBP210095.105ENSRBIG00000044115SECISBP210095.105Rhinopithecus_bieti
ENSG00000187742SECISBP210095.338ENSRROG00000030742SECISBP210095.338Rhinopithecus_roxellana
ENSG00000187742SECISBP28094.106ENSSBOG00000015392SECISBP29194.106Saimiri_boliviensis_boliviensis
ENSG00000187742SECISBP210060.620ENSSHAG00000005947SECISBP210060.964Sarcophilus_harrisii
ENSG00000187742SECISBP25352.347ENSSFOG00015010409secisbp25946.484Scleropages_formosus
ENSG00000187742SECISBP25849.609ENSSMAG00000008472secisbp27649.119Scophthalmus_maximus
ENSG00000187742SECISBP28240.831ENSSDUG00000002089secisbp28340.177Seriola_dumerili
ENSG00000187742SECISBP28340.420ENSSLDG00000003510secisbp28340.056Seriola_lalandi_dorsalis
ENSG00000187742SECISBP29749.511ENSSARG00000012518-8259.366Sorex_araneus
ENSG00000187742SECISBP29643.025ENSSPUG00000009635SECISBP29841.838Sphenodon_punctatus
ENSG00000187742SECISBP25750.000ENSSPAG00000013606secisbp26149.493Stegastes_partitus
ENSG00000187742SECISBP210078.294ENSSSCG00000028033SECISBP210078.291Sus_scrofa
ENSG00000187742SECISBP26854.212ENSTGUG00000000440SECISBP29953.663Taeniopygia_guttata
ENSG00000187742SECISBP25548.837ENSTRUG00000016835secisbp26548.305Takifugu_rubripes
ENSG00000187742SECISBP25950.529ENSTNIG00000015576secisbp29551.974Tetraodon_nigroviridis
ENSG00000187742SECISBP28380.435ENSTBEG00000000288SECISBP28480.435Tupaia_belangeri
ENSG00000187742SECISBP210077.156ENSTTRG00000003339SECISBP29877.156Tursiops_truncatus
ENSG00000187742SECISBP210074.242ENSUAMG00000016243SECISBP210074.242Ursus_americanus
ENSG00000187742SECISBP210072.405ENSUMAG00000016261SECISBP210072.643Ursus_maritimus
ENSG00000187742SECISBP210073.232ENSVVUG00000022278SECISBP29973.765Vulpes_vulpes
ENSG00000187742SECISBP26053.402ENSXETG00000029955SECISBP28653.750Xenopus_tropicalis
ENSG00000187742SECISBP25948.479ENSXMAG00000003090secisbp26247.967Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001514selenocysteine incorporation21873635.IBAProcess
GO:0003723RNA binding22658674.HDAFunction
GO:0003730mRNA 3'-UTR binding21873635.IBAFunction
GO:0003730mRNA 3'-UTR binding16962588.17332014.IDAFunction
GO:0005515protein binding25416956.IPIFunction
GO:0005634nucleus-IEAComponent
GO:0005739mitochondrion-IEAComponent
GO:0021756striatum development-IEAProcess
GO:0035368selenocysteine insertion sequence binding21873635.IBAFunction
GO:0043021ribonucleoprotein complex binding21873635.IBAFunction
GO:0048666neuron development-IEAProcess
GO:1990904ribonucleoprotein complex21873635.IBAComponent
GO:2000623negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay-IEAProcess

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