EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

GWAS

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000187959 (Gene tree)
Gene ID: 642843
Gene Symbol: CPSF4L
Alias: N
Full Name: cleavage and polyadenylation specific factor 4 like
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 20,190 bases
Position: chr17:73,242,343-73,262,532
Accession: 33632
RBP type: canonical RBP
Summary: (Cleavage And Polyadenylation Specific Factor 4 Like) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include RNA binding. An important paralog of this gene is CPSF4.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000343900	zf-CCCH	PF00642.24	1.2e-17	1	1
ENSP00000380788	zf-CCCH	PF00642.24	1.4e-11	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000397671	CPSF4L-202	1275	-	ENSP00000380788	152 (aa)	-	H9KVA5
ENST00000344935	CPSF4L-201	647	XM_011525115	ENSP00000343900	179 (aa)	XP_011523417	A6NMK7

Gene Model

Click here to download ENSG00000187959's gene model file

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000187959	rs9900555	17	73256884	?	Red cell distribution width	30595370			EFO_0005192

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000187959's network

* RBP PPI network refers to all genes directly bind to RBP

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSG00000187959	CPSF4L	92	67.683	ENSG00000160917	CPSF4	99	74.775

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000187959	CPSF4L	99	82.022	ENSAMEG00000002707	CPSF4L	65	82.022	Ailuropoda_melanoleuca
ENSG00000187959	CPSF4L	99	59.603	ENSANAG00000026558	-	100	59.603	Aotus_nancymaae
ENSG00000187959	CPSF4L	91	75.460	ENSCJAG00000019911	CPSF4L	96	75.460	Callithrix_jacchus
ENSG00000187959	CPSF4L	52	75.949	ENSCCAG00000030566	CPSF4L	66	75.949	Cebus_capucinus
ENSG00000187959	CPSF4L	100	95.531	ENSCATG00000044555	CPSF4L	100	95.531	Cercocebus_atys
ENSG00000187959	CPSF4L	100	94.444	ENSCSAG00000004429	CPSF4L	100	94.444	Chlorocebus_sabaeus
ENSG00000187959	CPSF4L	100	95.531	ENSCANG00000035042	CPSF4L	100	95.531	Colobus_angolensis_palliatus
ENSG00000187959	CPSF4L	99	74.719	ENSCGRG00001020079	Cpsf4l	99	74.719	Cricetulus_griseus_chok1gshd
ENSG00000187959	CPSF4L	99	74.719	ENSCGRG00000010419	Cpsf4l	99	74.719	Cricetulus_griseus_crigri
ENSG00000187959	CPSF4L	93	89.222	ENSDNOG00000014458	CPSF4L	87	89.222	Dasypus_novemcinctus
ENSG00000187959	CPSF4L	93	89.759	ENSEASG00005018763	CPSF4L	100	89.759	Equus_asinus_asinus
ENSG00000187959	CPSF4L	93	89.759	ENSECAG00000024813	CPSF4L	100	89.759	Equus_caballus
ENSG00000187959	CPSF4L	93	87.349	ENSFCAG00000004745	CPSF4L	66	87.349	Felis_catus
ENSG00000187959	CPSF4L	100	98.883	ENSGGOG00000026659	CPSF4L	100	98.883	Gorilla_gorilla
ENSG00000187959	CPSF4L	93	86.747	ENSSTOG00000001849	CPSF4L	95	86.747	Ictidomys_tridecemlineatus
ENSG00000187959	CPSF4L	99	79.213	ENSLAFG00000010697	CPSF4L	100	79.213	Loxodonta_africana
ENSG00000187959	CPSF4L	100	95.531	ENSMFAG00000037840	CPSF4L	100	95.531	Macaca_fascicularis
ENSG00000187959	CPSF4L	100	95.531	ENSMMUG00000001271	CPSF4L	100	95.531	Macaca_mulatta
ENSG00000187959	CPSF4L	100	95.531	ENSMNEG00000045419	CPSF4L	100	95.531	Macaca_nemestrina
ENSG00000187959	CPSF4L	100	96.089	ENSMLEG00000038527	CPSF4L	100	96.089	Mandrillus_leucophaeus
ENSG00000187959	CPSF4L	93	80.120	ENSMAUG00000019519	-	100	80.120	Mesocricetus_auratus
ENSG00000187959	CPSF4L	98	90.857	ENSMICG00000007503	CPSF4L	98	90.857	Microcebus_murinus
ENSG00000187959	CPSF4L	75	80.000	ENSMOCG00000015313	-	93	80.000	Microtus_ochrogaster
ENSG00000187959	CPSF4L	91	76.543	ENSMODG00000025672	CPSF4L	100	76.543	Monodelphis_domestica
ENSG00000187959	CPSF4L	93	74.850	MGP_CAROLIEiJ_G0017369	-	73	74.850	Mus_caroli
ENSG00000187959	CPSF4L	93	75.449	ENSMUSG00000018727	Cpsf4l	73	75.449	Mus_musculus
ENSG00000187959	CPSF4L	68	75.728	MGP_PahariEiJ_G0018499	-	81	69.355	Mus_pahari
ENSG00000187959	CPSF4L	68	73.786	MGP_SPRETEiJ_G0018215	-	82	67.200	Mus_spretus
ENSG00000187959	CPSF4L	93	85.030	ENSMPUG00000014276	CPSF4L	100	85.030	Mustela_putorius_furo
ENSG00000187959	CPSF4L	100	77.095	ENSMLUG00000009617	CPSF4L	100	77.095	Myotis_lucifugus
ENSG00000187959	CPSF4L	92	81.707	ENSNGAG00000009325	-	96	81.707	Nannospalax_galili
ENSG00000187959	CPSF4L	100	99.441	ENSNLEG00000001420	CPSF4L	100	99.441	Nomascus_leucogenys
ENSG00000187959	CPSF4L	66	77.228	ENSMEUG00000004051	-	99	77.228	Notamacropus_eugenii
ENSG00000187959	CPSF4L	96	68.493	ENSOPRG00000007484	-	99	68.493	Ochotona_princeps
ENSG00000187959	CPSF4L	93	81.928	ENSOCUG00000026495	CPSF4L	74	81.928	Oryctolagus_cuniculus
ENSG00000187959	CPSF4L	100	99.342	ENSPPAG00000037000	-	100	100.000	Pan_paniscus
ENSG00000187959	CPSF4L	97	70.779	ENSPPRG00000001058	CPSF4L	100	70.779	Panthera_pardus
ENSG00000187959	CPSF4L	94	75.148	ENSPTIG00000012676	CPSF4L	96	75.148	Panthera_tigris_altaica
ENSG00000187959	CPSF4L	100	100.000	ENSPTRG00000009598	CPSF4L	100	100.000	Pan_troglodytes
ENSG00000187959	CPSF4L	100	96.089	ENSPANG00000020331	CPSF4L	100	96.089	Papio_anubis
ENSG00000187959	CPSF4L	93	79.518	ENSPEMG00000011680	Cpsf4l	80	71.545	Peromyscus_maniculatus_bairdii
ENSG00000187959	CPSF4L	94	76.190	ENSPCIG00000001889	CPSF4L	99	76.190	Phascolarctos_cinereus
ENSG00000187959	CPSF4L	100	98.026	ENSPPYG00000008589	-	100	98.026	Pongo_abelii
ENSG00000187959	CPSF4L	100	85.165	ENSPCOG00000021801	CPSF4L	100	85.165	Propithecus_coquereli
ENSG00000187959	CPSF4L	97	75.676	ENSPVAG00000006736	CPSF4L	99	75.676	Pteropus_vampyrus
ENSG00000187959	CPSF4L	100	94.972	ENSRBIG00000029048	CPSF4L	100	94.972	Rhinopithecus_bieti
ENSG00000187959	CPSF4L	100	94.413	ENSRROG00000037051	CPSF4L	100	94.413	Rhinopithecus_roxellana
ENSG00000187959	CPSF4L	99	78.146	ENSTTRG00000005243	CPSF4L	100	78.146	Tursiops_truncatus
ENSG00000187959	CPSF4L	75	89.630	ENSUAMG00000007728	CPSF4L	86	89.630	Ursus_americanus
ENSG00000187959	CPSF4L	75	89.630	ENSUMAG00000007869	CPSF4L	86	89.630	Ursus_maritimus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	21873635.	IBA	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0098789	pre-mRNA cleavage required for polyadenylation	21873635.	IBA	Process