EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000188177 (Gene tree)
Gene ID: 376940
Gene Symbol: ZC3H6
Alias: FLJ41410|FLJ45877|KIAA2035|ZC3HDC6
Full Name: zinc finger CCCH-type containing 6
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Plus strand
Length: 64,505 bases
Position: chr2:112,275,559-112,340,063
Accession: 24762
RBP type: canonical RBP
Summary: (Zinc Finger CCCH-Type Containing 6) is a Protein Coding gene. An important paralog of this gene is ZC3H4.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000340298	zf-CCCH	PF00642.24	3.4e-11	1	2
ENSP00000340298	zf-CCCH	PF00642.24	3.4e-11	2	2
ENSP00000386764	zf-CCCH	PF00642.24	3.4e-11	1	2
ENSP00000386764	zf-CCCH	PF00642.24	3.4e-11	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000343936	ZC3H6-201	11539	-	ENSP00000340298	1189 (aa)	-	P61129
ENST00000502881	ZC3H6-204	426	-	-	- (aa)	-	-
ENST00000409871	ZC3H6-202	11542	XM_006712519	ENSP00000386764	1189 (aa)	XP_006712582	P61129
ENST00000476511	ZC3H6-203	963	-	-	- (aa)	-	-

Gene Model

Click here to download ENSG00000188177's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000188177's network

* RBP PPI network refers to all genes directly bind to RBP

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSG00000188177	ZC3H6	56	47.685	ENSG00000130749	ZC3H4	89	41.141

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000188177	ZC3H6	100	86.796	ENSAMEG00000016194	ZC3H6	100	86.712	Ailuropoda_melanoleuca
ENSG00000188177	ZC3H6	61	67.876	ENSACIG00000021843	zc3h6	73	56.554	Amphilophus_citrinellus
ENSG00000188177	ZC3H6	61	68.750	ENSAOCG00000004039	zc3h6	89	44.112	Amphiprion_ocellaris
ENSG00000188177	ZC3H6	79	41.776	ENSATEG00000019063	zc3h6	98	40.188	Anabas_testudineus
ENSG00000188177	ZC3H6	99	65.452	ENSAPLG00000014287	ZC3H6	99	66.086	Anas_platyrhynchos
ENSG00000188177	ZC3H6	100	96.218	ENSANAG00000024229	ZC3H6	100	96.218	Aotus_nancymaae
ENSG00000188177	ZC3H6	61	69.271	ENSACLG00000026343	zc3h6	84	48.225	Astatotilapia_calliptera
ENSG00000188177	ZC3H6	100	96.303	ENSCJAG00000016479	ZC3H6	100	96.303	Callithrix_jacchus
ENSG00000188177	ZC3H6	100	86.880	ENSCAFG00000007160	ZC3H6	100	85.738	Canis_familiaris
ENSG00000188177	ZC3H6	100	85.198	ENSCAFG00020017525	ZC3H6	100	84.070	Canis_lupus_dingo
ENSG00000188177	ZC3H6	80	81.474	ENSCHIG00000019719	-	96	81.474	Capra_hircus
ENSG00000188177	ZC3H6	100	92.353	ENSTSYG00000031857	ZC3H6	100	92.521	Carlito_syrichta
ENSG00000188177	ZC3H6	99	81.154	ENSCPOG00000003445	ZC3H6	100	81.749	Cavia_porcellus
ENSG00000188177	ZC3H6	100	97.981	ENSCATG00000036595	ZC3H6	100	97.981	Cercocebus_atys
ENSG00000188177	ZC3H6	90	86.155	ENSCLAG00000006605	ZC3H6	100	86.155	Chinchilla_lanigera
ENSG00000188177	ZC3H6	90	97.661	ENSCSAG00000016793	ZC3H6	100	97.661	Chlorocebus_sabaeus
ENSG00000188177	ZC3H6	99	97.878	ENSCANG00000041036	ZC3H6	100	97.878	Colobus_angolensis_palliatus
ENSG00000188177	ZC3H6	99	75.801	ENSCGRG00001022022	Zc3h6	99	75.885	Cricetulus_griseus_chok1gshd
ENSG00000188177	ZC3H6	99	78.965	ENSCGRG00000016162	Zc3h6	100	79.050	Cricetulus_griseus_crigri
ENSG00000188177	ZC3H6	67	56.537	ENSCSEG00000012267	zc3h6	89	49.565	Cynoglossus_semilaevis
ENSG00000188177	ZC3H6	99	78.032	ENSDNOG00000044811	ZC3H6	100	78.032	Dasypus_novemcinctus
ENSG00000188177	ZC3H6	99	82.343	ENSDORG00000013967	Zc3h6	100	82.003	Dipodomys_ordii
ENSG00000188177	ZC3H6	83	88.194	ENSEASG00005006493	ZC3H6	100	88.194	Equus_asinus_asinus
ENSG00000188177	ZC3H6	100	89.487	ENSECAG00000023620	ZC3H6	100	89.487	Equus_caballus
ENSG00000188177	ZC3H6	82	78.479	ENSEEUG00000013883	-	85	78.479	Erinaceus_europaeus
ENSG00000188177	ZC3H6	100	88.646	ENSFCAG00000008089	ZC3H6	100	87.406	Felis_catus
ENSG00000188177	ZC3H6	99	64.716	ENSFALG00000011589	ZC3H6	99	65.275	Ficedula_albicollis
ENSG00000188177	ZC3H6	99	86.005	ENSFDAG00000002521	ZC3H6	99	86.005	Fukomys_damarensis
ENSG00000188177	ZC3H6	99	64.784	ENSGALG00000008269	ZC3H6	98	65.340	Gallus_gallus
ENSG00000188177	ZC3H6	61	62.694	ENSGAFG00000006771	zc3h6	77	62.051	Gambusia_affinis
ENSG00000188177	ZC3H6	50	38.080	ENSGACG00000005343	zc3h6	100	39.338	Gasterosteus_aculeatus
ENSG00000188177	ZC3H6	99	67.866	ENSGAGG00000010857	ZC3H6	99	67.950	Gopherus_agassizii
ENSG00000188177	ZC3H6	100	99.243	ENSGGOG00000001665	ZC3H6	100	99.243	Gorilla_gorilla
ENSG00000188177	ZC3H6	61	69.271	ENSHBUG00000010088	zc3h6	84	48.225	Haplochromis_burtoni
ENSG00000188177	ZC3H6	99	85.641	ENSHGLG00000011882	ZC3H6	96	85.726	Heterocephalus_glaber_female
ENSG00000188177	ZC3H6	99	83.107	ENSHGLG00100002559	ZC3H6	100	83.192	Heterocephalus_glaber_male
ENSG00000188177	ZC3H6	99	38.505	ENSHCOG00000012519	zc3h6	87	43.656	Hippocampus_comes
ENSG00000188177	ZC3H6	90	84.939	ENSSTOG00000008120	-	100	84.939	Ictidomys_tridecemlineatus
ENSG00000188177	ZC3H6	100	83.011	ENSJJAG00000013206	Zc3h6	100	83.011	Jaculus_jaculus
ENSG00000188177	ZC3H6	80	41.517	ENSKMAG00000016252	zc3h6	87	45.110	Kryptolebias_marmoratus
ENSG00000188177	ZC3H6	58	65.803	ENSLBEG00000003054	zc3h6	82	46.316	Labrus_bergylta
ENSG00000188177	ZC3H6	99	50.040	ENSLACG00000012014	ZC3H6	100	51.290	Latimeria_chalumnae
ENSG00000188177	ZC3H6	100	46.141	ENSLOCG00000016548	zc3h6	98	46.939	Lepisosteus_oculatus
ENSG00000188177	ZC3H6	93	81.505	ENSLAFG00000001151	ZC3H6	98	81.233	Loxodonta_africana
ENSG00000188177	ZC3H6	100	97.981	ENSMFAG00000036963	ZC3H6	100	97.981	Macaca_fascicularis
ENSG00000188177	ZC3H6	100	98.066	ENSMMUG00000016430	ZC3H6	100	98.066	Macaca_mulatta
ENSG00000188177	ZC3H6	100	97.813	ENSMNEG00000031225	ZC3H6	100	97.813	Macaca_nemestrina
ENSG00000188177	ZC3H6	100	98.066	ENSMLEG00000038821	ZC3H6	100	98.066	Mandrillus_leucophaeus
ENSG00000188177	ZC3H6	79	41.028	ENSMAMG00000021546	zc3h6	98	40.363	Mastacembelus_armatus
ENSG00000188177	ZC3H6	61	69.271	ENSMZEG00005006828	zc3h6	84	48.225	Maylandia_zebra
ENSG00000188177	ZC3H6	99	64.950	ENSMGAG00000003025	ZC3H6	99	65.506	Meleagris_gallopavo
ENSG00000188177	ZC3H6	100	79.244	ENSMAUG00000017009	Zc3h6	100	79.328	Mesocricetus_auratus
ENSG00000188177	ZC3H6	100	91.674	ENSMICG00000036353	ZC3H6	100	91.674	Microcebus_murinus
ENSG00000188177	ZC3H6	100	78.151	ENSMOCG00000002054	Zc3h6	100	78.235	Microtus_ochrogaster
ENSG00000188177	ZC3H6	99	69.507	ENSMODG00000006612	ZC3H6	100	69.424	Monodelphis_domestica
ENSG00000188177	ZC3H6	66	56.134	ENSMALG00000002048	zc3h6	73	59.274	Monopterus_albus
ENSG00000188177	ZC3H6	100	76.154	MGP_CAROLIEiJ_G0024278	Zc3h6	100	76.238	Mus_caroli
ENSG00000188177	ZC3H6	100	76.490	ENSMUSG00000042851	Zc3h6	100	76.574	Mus_musculus
ENSG00000188177	ZC3H6	100	76.071	MGP_PahariEiJ_G0025723	Zc3h6	100	76.071	Mus_pahari
ENSG00000188177	ZC3H6	100	76.658	MGP_SPRETEiJ_G0025198	Zc3h6	100	76.742	Mus_spretus
ENSG00000188177	ZC3H6	90	86.155	ENSMPUG00000009624	ZC3H6	100	86.342	Mustela_putorius_furo
ENSG00000188177	ZC3H6	99	80.219	ENSMLUG00000004896	ZC3H6	99	81.061	Myotis_lucifugus
ENSG00000188177	ZC3H6	94	79.554	ENSNGAG00000013596	Zc3h6	98	79.655	Nannospalax_galili
ENSG00000188177	ZC3H6	58	68.229	ENSNBRG00000015382	zc3h6	72	57.358	Neolamprologus_brichardi
ENSG00000188177	ZC3H6	99	97.034	ENSNLEG00000033657	ZC3H6	99	97.034	Nomascus_leucogenys
ENSG00000188177	ZC3H6	100	80.824	ENSOPRG00000012717	ZC3H6	100	80.824	Ochotona_princeps
ENSG00000188177	ZC3H6	94	83.839	ENSODEG00000009099	ZC3H6	98	83.651	Octodon_degus
ENSG00000188177	ZC3H6	83	40.801	ENSONIG00000009880	zc3h6	98	38.841	Oreochromis_niloticus
ENSG00000188177	ZC3H6	99	70.295	ENSOANG00000012054	-	96	70.802	Ornithorhynchus_anatinus
ENSG00000188177	ZC3H6	95	86.968	ENSOCUG00000011125	ZC3H6	100	87.115	Oryctolagus_cuniculus
ENSG00000188177	ZC3H6	88	44.259	ENSOMEG00000001296	zc3h6	86	49.573	Oryzias_melastigma
ENSG00000188177	ZC3H6	99	89.398	ENSOGAG00000002556	ZC3H6	100	89.398	Otolemur_garnettii
ENSG00000188177	ZC3H6	100	83.529	ENSOARG00000014503	ZC3H6	100	83.529	Ovis_aries
ENSG00000188177	ZC3H6	99	98.896	ENSPPAG00000030495	ZC3H6	100	98.896	Pan_paniscus
ENSG00000188177	ZC3H6	100	88.814	ENSPPRG00000005673	ZC3H6	100	87.490	Panthera_pardus
ENSG00000188177	ZC3H6	99	87.416	ENSPTIG00000015800	ZC3H6	99	86.097	Panthera_tigris_altaica
ENSG00000188177	ZC3H6	100	98.991	ENSPTRG00000012363	ZC3H6	100	98.991	Pan_troglodytes
ENSG00000188177	ZC3H6	100	97.729	ENSPANG00000025224	ZC3H6	100	97.729	Papio_anubis
ENSG00000188177	ZC3H6	62	68.229	ENSPKIG00000007353	zc3h6	97	48.193	Paramormyrops_kingsleyae
ENSG00000188177	ZC3H6	98	67.761	ENSPSIG00000002520	ZC3H6	100	67.845	Pelodiscus_sinensis
ENSG00000188177	ZC3H6	99	76.852	ENSPEMG00000000918	Zc3h6	100	76.852	Peromyscus_maniculatus_bairdii
ENSG00000188177	ZC3H6	90	72.778	ENSPCIG00000029741	ZC3H6	100	72.778	Phascolarctos_cinereus
ENSG00000188177	ZC3H6	62	64.216	ENSPFOG00000015748	zc3h6	86	49.353	Poecilia_formosa
ENSG00000188177	ZC3H6	62	64.216	ENSPLAG00000002469	zc3h6	86	49.353	Poecilia_latipinna
ENSG00000188177	ZC3H6	60	67.380	ENSPMEG00000020802	zc3h6	83	66.667	Poecilia_mexicana
ENSG00000188177	ZC3H6	63	61.468	ENSPREG00000023126	zc3h6	79	52.759	Poecilia_reticulata
ENSG00000188177	ZC3H6	78	78.533	ENSPCAG00000015468	ZC3H6	78	77.886	Procavia_capensis
ENSG00000188177	ZC3H6	100	91.253	ENSPCOG00000016627	ZC3H6	100	90.749	Propithecus_coquereli
ENSG00000188177	ZC3H6	69	94.059	ENSPVAG00000013728	ZC3H6	70	94.059	Pteropus_vampyrus
ENSG00000188177	ZC3H6	61	68.229	ENSPNYG00000018130	zc3h6	74	57.358	Pundamilia_nyererei
ENSG00000188177	ZC3H6	79	44.683	ENSPNAG00000009331	zc3h6	98	42.598	Pygocentrus_nattereri
ENSG00000188177	ZC3H6	100	76.826	ENSRNOG00000026277	Zc3h6	100	76.574	Rattus_norvegicus
ENSG00000188177	ZC3H6	100	96.303	ENSSBOG00000033489	ZC3H6	100	96.303	Saimiri_boliviensis_boliviensis
ENSG00000188177	ZC3H6	83	71.357	ENSSHAG00000016634	ZC3H6	100	71.357	Sarcophilus_harrisii
ENSG00000188177	ZC3H6	100	40.696	ENSSFOG00015004488	zc3h6	98	41.680	Scleropages_formosus
ENSG00000188177	ZC3H6	61	67.016	ENSSMAG00000008411	zc3h6	85	46.278	Scophthalmus_maximus
ENSG00000188177	ZC3H6	66	55.639	ENSSDUG00000006105	zc3h6	90	47.145	Seriola_dumerili
ENSG00000188177	ZC3H6	66	55.639	ENSSLDG00000021813	zc3h6	90	47.145	Seriola_lalandi_dorsalis
ENSG00000188177	ZC3H6	99	78.372	ENSSARG00000001035	ZC3H6	100	78.372	Sorex_araneus
ENSG00000188177	ZC3H6	61	59.055	ENSSPUG00000013031	-	76	37.097	Sphenodon_punctatus
ENSG00000188177	ZC3H6	100	87.973	ENSSSCG00000008096	ZC3H6	100	87.973	Sus_scrofa
ENSG00000188177	ZC3H6	99	64.452	ENSTGUG00000007468	ZC3H6	100	65.423	Taeniopygia_guttata
ENSG00000188177	ZC3H6	100	39.457	ENSTRUG00000012901	zc3h6	98	38.928	Takifugu_rubripes
ENSG00000188177	ZC3H6	96	40.204	ENSTNIG00000016608	zc3h6	89	48.802	Tetraodon_nigroviridis
ENSG00000188177	ZC3H6	85	90.876	ENSTBEG00000016232	ZC3H6	91	90.876	Tupaia_belangeri
ENSG00000188177	ZC3H6	82	81.871	ENSTTRG00000013154	ZC3H6	82	81.871	Tursiops_truncatus
ENSG00000188177	ZC3H6	90	86.623	ENSUAMG00000002401	ZC3H6	100	85.171	Ursus_americanus
ENSG00000188177	ZC3H6	90	86.436	ENSUMAG00000008663	ZC3H6	100	84.986	Ursus_maritimus
ENSG00000188177	ZC3H6	99	85.072	ENSVPAG00000005912	ZC3H6	100	84.343	Vicugna_pacos
ENSG00000188177	ZC3H6	90	86.717	ENSVVUG00000028662	ZC3H6	100	85.264	Vulpes_vulpes
ENSG00000188177	ZC3H6	89	59.847	ENSXETG00000013762	zc3h6	96	61.067	Xenopus_tropicalis
ENSG00000188177	ZC3H6	51	63.592	ENSXCOG00000011662	zc3h6	74	53.472	Xiphophorus_couchianus
ENSG00000188177	ZC3H6	61	66.667	ENSXMAG00000020822	zc3h6	86	48.857	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	-	ISA	Function
GO:0001162	RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0003674	molecular_function	-	ND	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006357	regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0045892	negative regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function