EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000188739 (Gene tree)
Gene ID: 23029
Gene Symbol: RBM34
Alias: KIAA0117
Full Name: RNA binding motif protein 34
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Minus strand
Length: 30,434 bases
Position: chr1:235,131,183-235,161,616
Accession: 28965
RBP type: canonical RBP
Summary: This gene encodes a member of the RNA-binding motif family of RNA recognition motif proteins. The encoded protein contains an RNA-binding domain made up of two RNA recognition motif subdomains referred to as RNA recognition motif-1 and RNA recognition motif-2. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2016]

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000386226	RRM_1	PF00076.22	1.2e-27	1	2
ENSP00000386226	RRM_1	PF00076.22	1.2e-27	2	2
ENSP00000400000	RRM_1	PF00076.22	1.3e-19	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
22681889	The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts	4SURIC & HEK293	2012 May	Baltz AG	DOI: 10.1016/j.molcel.2012.05.021
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
29431736	Capturing the interactome of newly transcribed RNA	PolyT-RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
29431736	Capturing the interactome of newly transcribed RNA	RIC & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
29431736	Capturing the interactome of newly transcribed RNA	RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
22658674	Insights into RNA biology from an atlas of mammalian mRNA-binding proteins	RIC & Hela	2012 May 31	Castello A	DOI: 10.1016/j.cell.2012.04.031
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30352994	Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture	RIC & Jurkat	2018 Oct 23	Perez-Perri JI	DOI:10.1038/s41467-018-06557-8

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000468751	RBM34-204	648	-	-	- (aa)	-	-
ENST00000495224	RBM34-210	549	-	-	- (aa)	-	-
ENST00000486751	RBM34-209	783	-	-	- (aa)	-	-
ENST00000474086	RBM34-205	882	-	ENSP00000420236	86 (aa)	-	H7C5M1
ENST00000447801	RBM34-203	1273	XM_011544133	ENSP00000400000	408 (aa)	XP_011542435	A2A2V2
ENST00000475960	RBM34-206	477	-	-	- (aa)	-	-
ENST00000429912	RBM34-202	667	-	ENSP00000413409	211 (aa)	-	Q5TCT4
ENST00000476261	RBM34-207	881	-	-	- (aa)	-	-
ENST00000485019	RBM34-208	409	-	-	- (aa)	-	-
ENST00000408888	RBM34-201	2054	-	ENSP00000386226	430 (aa)	-	P42696

Gene Model

Click here to download ENSG00000188739's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000188739's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000188739	RBM34	81	45.739	ENSAPOG00000004027	rbm34	81	45.739	Acanthochromis_polyacanthus
ENSG00000188739	RBM34	85	39.237	ENSACIG00000014842	rbm34	76	39.459	Amphilophus_citrinellus
ENSG00000188739	RBM34	80	45.821	ENSAOCG00000006146	rbm34	95	42.891	Amphiprion_ocellaris
ENSG00000188739	RBM34	80	45.559	ENSAPEG00000022105	rbm34	76	45.559	Amphiprion_percula
ENSG00000188739	RBM34	80	46.377	ENSATEG00000016567	rbm34	79	46.377	Anabas_testudineus
ENSG00000188739	RBM34	74	54.658	ENSAPLG00000004344	RBM34	81	59.770	Anas_platyrhynchos
ENSG00000188739	RBM34	88	53.197	ENSACAG00000001253	RBM34	89	53.197	Anolis_carolinensis
ENSG00000188739	RBM34	100	85.714	ENSANAG00000029971	RBM34	100	85.714	Aotus_nancymaae
ENSG00000188739	RBM34	81	45.299	ENSACLG00000026337	rbm34	79	45.299	Astatotilapia_calliptera
ENSG00000188739	RBM34	79	45.349	ENSACLG00000018471	rbm34	69	45.299	Astatotilapia_calliptera
ENSG00000188739	RBM34	86	43.089	ENSAMXG00000021328	rbm34	81	43.089	Astyanax_mexicanus
ENSG00000188739	RBM34	100	87.907	ENSCJAG00000018125	RBM34	100	87.907	Callithrix_jacchus
ENSG00000188739	RBM34	100	76.157	ENSCAFG00000011507	RBM34	100	75.926	Canis_familiaris
ENSG00000188739	RBM34	95	80.929	ENSTSYG00000009942	RBM34	100	80.233	Carlito_syrichta
ENSG00000188739	RBM34	81	68.555	ENSCAPG00000015346	RBM34	99	68.555	Cavia_aperea
ENSG00000188739	RBM34	100	72.748	ENSCPOG00000015213	RBM34	100	72.748	Cavia_porcellus
ENSG00000188739	RBM34	100	89.070	ENSCCAG00000025584	RBM34	100	89.070	Cebus_capucinus
ENSG00000188739	RBM34	99	92.290	ENSCATG00000031771	RBM34	100	93.224	Cercocebus_atys
ENSG00000188739	RBM34	95	72.993	ENSCLAG00000003464	RBM34	100	72.685	Chinchilla_lanigera
ENSG00000188739	RBM34	100	94.651	ENSCSAG00000010079	RBM34	100	94.651	Chlorocebus_sabaeus
ENSG00000188739	RBM34	93	55.147	ENSCPBG00000005460	RBM34	83	55.584	Chrysemys_picta_bellii
ENSG00000188739	RBM34	100	93.023	ENSCANG00000009561	RBM34	100	93.023	Colobus_angolensis_palliatus
ENSG00000188739	RBM34	93	60.938	ENSCGRG00001018721	Rbm34	99	67.254	Cricetulus_griseus_chok1gshd
ENSG00000188739	RBM34	93	66.667	ENSCGRG00000014051	Rbm34	98	66.005	Cricetulus_griseus_crigri
ENSG00000188739	RBM34	79	43.228	ENSCSEG00000000993	rbm34	77	44.023	Cynoglossus_semilaevis
ENSG00000188739	RBM34	85	41.081	ENSCVAG00000018699	rbm34	86	41.081	Cyprinodon_variegatus
ENSG00000188739	RBM34	70	47.195	ENSDARG00000101877	rbm34	95	47.712	Danio_rerio
ENSG00000188739	RBM34	99	76.212	ENSDNOG00000044740	RBM34	99	76.212	Dasypus_novemcinctus
ENSG00000188739	RBM34	72	79.935	ENSDORG00000006420	Rbm34	99	79.935	Dipodomys_ordii
ENSG00000188739	RBM34	89	84.524	ENSEEUG00000012760	RBM34	85	84.524	Erinaceus_europaeus
ENSG00000188739	RBM34	78	42.262	ENSELUG00000015682	rbm34	75	42.105	Esox_lucius
ENSG00000188739	RBM34	99	79.907	ENSFCAG00000001852	RBM34	99	79.907	Felis_catus
ENSG00000188739	RBM34	71	42.434	ENSFHEG00000010140	rbm34	99	41.613	Fundulus_heteroclitus
ENSG00000188739	RBM34	51	45.455	ENSGMOG00000011683	rbm34	83	46.364	Gadus_morhua
ENSG00000188739	RBM34	54	51.064	ENSGALG00000029915	RBM34	77	51.064	Gallus_gallus
ENSG00000188739	RBM34	78	45.455	ENSGAFG00000017798	rbm34	78	46.018	Gambusia_affinis
ENSG00000188739	RBM34	83	42.135	ENSGACG00000001040	-	78	42.135	Gasterosteus_aculeatus
ENSG00000188739	RBM34	93	54.545	ENSGAGG00000020598	RBM34	89	55.216	Gopherus_agassizii
ENSG00000188739	RBM34	100	98.140	ENSGGOG00000007924	RBM34	100	98.140	Gorilla_gorilla
ENSG00000188739	RBM34	81	45.584	ENSHBUG00000015508	rbm34	79	45.584	Haplochromis_burtoni
ENSG00000188739	RBM34	100	75.463	ENSHGLG00000016495	RBM34	100	74.537	Heterocephalus_glaber_female
ENSG00000188739	RBM34	100	75.463	ENSHGLG00100014678	RBM34	100	74.537	Heterocephalus_glaber_male
ENSG00000188739	RBM34	76	46.341	ENSIPUG00000021952	rbm34	74	46.199	Ictalurus_punctatus
ENSG00000188739	RBM34	100	73.782	ENSSTOG00000002792	RBM34	100	73.782	Ictidomys_tridecemlineatus
ENSG00000188739	RBM34	72	77.244	ENSJJAG00000021295	Rbm34	100	77.244	Jaculus_jaculus
ENSG00000188739	RBM34	82	45.070	ENSKMAG00000007790	rbm34	81	45.070	Kryptolebias_marmoratus
ENSG00000188739	RBM34	84	43.052	ENSLBEG00000022530	-	84	43.052	Labrus_bergylta
ENSG00000188739	RBM34	62	41.758	ENSLBEG00000028305	rbm34	69	41.758	Labrus_bergylta
ENSG00000188739	RBM34	79	51.567	ENSLACG00000013628	RBM34	85	49.731	Latimeria_chalumnae
ENSG00000188739	RBM34	93	45.906	ENSLOCG00000015902	rbm34	87	45.906	Lepisosteus_oculatus
ENSG00000188739	RBM34	100	78.539	ENSLAFG00000014289	RBM34	100	78.539	Loxodonta_africana
ENSG00000188739	RBM34	99	92.523	ENSMFAG00000038522	RBM34	100	93.458	Macaca_fascicularis
ENSG00000188739	RBM34	95	93.857	ENSMMUG00000039424	RBM34	99	93.857	Macaca_mulatta
ENSG00000188739	RBM34	99	92.757	ENSMNEG00000040149	RBM34	100	93.692	Macaca_nemestrina
ENSG00000188739	RBM34	78	43.027	ENSMAMG00000018828	rbm34	77	43.068	Mastacembelus_armatus
ENSG00000188739	RBM34	81	45.480	ENSMZEG00005021586	rbm34	79	45.299	Maylandia_zebra
ENSG00000188739	RBM34	91	51.629	ENSMGAG00000011921	RBM34	94	52.756	Meleagris_gallopavo
ENSG00000188739	RBM34	100	80.465	ENSMICG00000038704	-	100	80.465	Microcebus_murinus
ENSG00000188739	RBM34	95	69.756	ENSMOCG00000013550	Rbm34	95	69.756	Microtus_ochrogaster
ENSG00000188739	RBM34	79	40.176	ENSMMOG00000018675	rbm34	80	39.601	Mola_mola
ENSG00000188739	RBM34	95	56.938	ENSMODG00000008436	RBM34	95	57.314	Monodelphis_domestica
ENSG00000188739	RBM34	86	42.667	ENSMALG00000007816	rbm34	86	42.308	Monopterus_albus
ENSG00000188739	RBM34	91	71.500	MGP_CAROLIEiJ_G0031732	Rbm34	100	69.704	Mus_caroli
ENSG00000188739	RBM34	95	68.160	ENSMUSG00000033931	Rbm34	100	68.539	Mus_musculus
ENSG00000188739	RBM34	95	70.290	MGP_PahariEiJ_G0023329	Rbm34	100	69.816	Mus_pahari
ENSG00000188739	RBM34	95	69.267	MGP_SPRETEiJ_G0032849	Rbm34	100	68.919	Mus_spretus
ENSG00000188739	RBM34	95	74.209	ENSMPUG00000002849	RBM34	100	74.478	Mustela_putorius_furo
ENSG00000188739	RBM34	93	76.039	ENSMLUG00000016224	RBM34	93	75.845	Myotis_lucifugus
ENSG00000188739	RBM34	99	69.882	ENSNGAG00000010712	Rbm34	99	69.789	Nannospalax_galili
ENSG00000188739	RBM34	80	42.693	ENSNBRG00000010975	rbm34	79	42.693	Neolamprologus_brichardi
ENSG00000188739	RBM34	100	95.349	ENSNLEG00000002610	RBM34	100	95.349	Nomascus_leucogenys
ENSG00000188739	RBM34	66	61.092	ENSMEUG00000005465	-	93	61.433	Notamacropus_eugenii
ENSG00000188739	RBM34	100	59.677	ENSOPRG00000013930	RBM34	100	59.908	Ochotona_princeps
ENSG00000188739	RBM34	91	73.980	ENSODEG00000006130	RBM34	100	73.980	Octodon_degus
ENSG00000188739	RBM34	85	43.052	ENSONIG00000018121	rbm34	80	43.089	Oreochromis_niloticus
ENSG00000188739	RBM34	88	58.355	ENSOANG00000001206	RBM34	90	58.524	Ornithorhynchus_anatinus
ENSG00000188739	RBM34	100	77.854	ENSOCUG00000009173	RBM34	100	77.626	Oryctolagus_cuniculus
ENSG00000188739	RBM34	79	47.076	ENSORLG00000001221	rbm34	79	46.398	Oryzias_latipes
ENSG00000188739	RBM34	79	47.368	ENSORLG00020016678	rbm34	79	46.686	Oryzias_latipes_hni
ENSG00000188739	RBM34	79	46.784	ENSORLG00015016039	rbm34	79	46.110	Oryzias_latipes_hsok
ENSG00000188739	RBM34	82	44.476	ENSOMEG00000007902	rbm34	82	44.507	Oryzias_melastigma
ENSG00000188739	RBM34	100	75.799	ENSOGAG00000012470	RBM34	99	76.092	Otolemur_garnettii
ENSG00000188739	RBM34	100	93.271	ENSPPAG00000030692	RBM34	100	93.271	Pan_paniscus
ENSG00000188739	RBM34	97	81.205	ENSPPRG00000013597	RBM34	99	79.673	Panthera_pardus
ENSG00000188739	RBM34	97	81.687	ENSPTIG00000011612	RBM34	99	80.841	Panthera_tigris_altaica
ENSG00000188739	RBM34	100	97.907	ENSPTRG00000032432	RBM34	100	97.907	Pan_troglodytes
ENSG00000188739	RBM34	100	97.907	ENSPTRG00000048646	-	100	97.907	Pan_troglodytes
ENSG00000188739	RBM34	100	93.256	ENSPANG00000010411	RBM34	100	94.186	Papio_anubis
ENSG00000188739	RBM34	85	44.624	ENSPKIG00000009284	rbm34	84	44.624	Paramormyrops_kingsleyae
ENSG00000188739	RBM34	93	52.000	ENSPSIG00000011370	RBM34	88	52.284	Pelodiscus_sinensis
ENSG00000188739	RBM34	59	43.529	ENSPMGG00000001183	rbm34	68	44.706	Periophthalmus_magnuspinnatus
ENSG00000188739	RBM34	93	70.149	ENSPEMG00000000265	Rbm34	94	71.144	Peromyscus_maniculatus_bairdii
ENSG00000188739	RBM34	62	46.996	ENSPMAG00000001602	rbm34	74	47.464	Petromyzon_marinus
ENSG00000188739	RBM34	95	59.330	ENSPCIG00000029736	-	83	59.268	Phascolarctos_cinereus
ENSG00000188739	RBM34	79	44.152	ENSPFOG00000009829	-	79	43.605	Poecilia_formosa
ENSG00000188739	RBM34	79	44.152	ENSPLAG00000018385	-	78	43.605	Poecilia_latipinna
ENSG00000188739	RBM34	79	38.596	ENSPMEG00000014440	-	77	38.596	Poecilia_mexicana
ENSG00000188739	RBM34	79	43.478	ENSPREG00000023227	rbm34	79	43.478	Poecilia_reticulata
ENSG00000188739	RBM34	100	96.279	ENSPPYG00000029513	RBM34	100	96.279	Pongo_abelii
ENSG00000188739	RBM34	100	80.233	ENSPCOG00000018448	RBM34	100	80.233	Propithecus_coquereli
ENSG00000188739	RBM34	95	78.049	ENSPVAG00000015158	RBM34	100	78.837	Pteropus_vampyrus
ENSG00000188739	RBM34	81	45.584	ENSPNYG00000004970	rbm34	79	45.299	Pundamilia_nyererei
ENSG00000188739	RBM34	62	52.632	ENSPNAG00000002639	rbm34	76	48.397	Pygocentrus_nattereri
ENSG00000188739	RBM34	95	68.916	ENSRNOG00000020004	Rbm34	100	68.506	Rattus_norvegicus
ENSG00000188739	RBM34	100	93.721	ENSRBIG00000032900	RBM34	100	93.721	Rhinopithecus_bieti
ENSG00000188739	RBM34	100	93.721	ENSRROG00000039131	RBM34	100	93.721	Rhinopithecus_roxellana
ENSG00000188739	RBM34	90	57.614	ENSSHAG00000015812	RBM34	95	57.692	Sarcophilus_harrisii
ENSG00000188739	RBM34	84	46.703	ENSSFOG00015000148	rbm34	79	46.429	Scleropages_formosus
ENSG00000188739	RBM34	80	45.272	ENSSMAG00000020955	rbm34	78	45.429	Scophthalmus_maximus
ENSG00000188739	RBM34	83	41.899	ENSSDUG00000019237	rbm34	81	43.597	Seriola_dumerili
ENSG00000188739	RBM34	83	40.443	ENSSLDG00000000796	rbm34	83	40.884	Seriola_lalandi_dorsalis
ENSG00000188739	RBM34	91	53.904	ENSSPUG00000015430	RBM34	91	54.408	Sphenodon_punctatus
ENSG00000188739	RBM34	78	44.510	ENSSPAG00000010174	rbm34	78	44.543	Stegastes_partitus
ENSG00000188739	RBM34	82	39.884	ENSTRUG00000011172	rbm34	82	42.229	Takifugu_rubripes
ENSG00000188739	RBM34	83	39.726	ENSTNIG00000001302	-	96	39.779	Tetraodon_nigroviridis
ENSG00000188739	RBM34	91	47.891	ENSXETG00000023721	rbm34	93	47.407	Xenopus_tropicalis
ENSG00000188739	RBM34	78	38.462	ENSXCOG00000011190	RBM34	78	38.700	Xiphophorus_couchianus
ENSG00000188739	RBM34	78	44.248	ENSXMAG00000029852	rbm34	78	44.214	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	22658674.22681889.	HDA	Function
GO:0005634	nucleus	-	IDA	Component
GO:0005730	nucleolus	-	IDA	Component