EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000189091 (Gene tree)
Gene ID
23450
Gene Symbol
SF3B3
Alias
SAP130|SF3b130|RSE1|KIAA0017
Full Name
splicing factor 3b subunit 3
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
53,883 bases
Position
chr16:70,523,788-70,577,670
Accession
10770
RBP type
canonical RBP
Summary
This gene encodes subunit 3 of the splicing factor 3b protein complex. Splicing factor 3b, together with splicing factor 3a and a 12S RNA unit, forms the U2 small nuclear ribonucleoproteins complex (U2 snRNP). The splicing factor 3b/3a complex binds pre-mRNA upstream of the intron's branch site in a sequence independent manner and may anchor the U2 snRNP to the pre-mRNA. Splicing factor 3b is also a component of the minor U12-type spliceosome. Subunit 3 has also been identified as a component of the STAGA (SPT3-TAF(II)31-GCN5L acetylase) transcription coactivator-HAT (histone acetyltransferase) complex, and the TFTC (TATA-binding-protein-free TAF(II)-containing complex). These complexes may function in chromatin modification, transcription, splicing, and DNA repair. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000305790CPSF_APF03178.159.5e-10211
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
23974796Identification of a long non-coding RNA-associated RNP complex regulating metastasis at the translational step.EMBO J2013 Oct 16Gumireddy Kdoi: 10.1038/emboj.2013.188
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000564899SF3B3-205551-ENSP000004613424 (aa)-UPI00025A308A
ENST00000562722SF3B3-202881--- (aa)--
ENST00000569687SF3B3-213333-ENSP0000046412631 (aa)-J3QRB2
ENST00000562874SF3B3-203401--- (aa)--
ENST00000567654SF3B3-210334-ENSP0000046335957 (aa)-J3QL37
ENST00000563739SF3B3-2041105--- (aa)--
ENST00000572365SF3B3-214575--- (aa)--
ENST00000568539SF3B3-212555--- (aa)--
ENST00000567635SF3B3-209630-ENSP0000046325391 (aa)-J3QKV4
ENST00000566095SF3B3-207453-ENSP0000045430830 (aa)-H3BMB0
ENST00000565990SF3B3-206967--- (aa)--
ENST00000568291SF3B3-2111067--- (aa)--
ENST00000577085SF3B3-215529-ENSP0000046123672 (aa)-I3L4G7
ENST00000302516SF3B3-2019720-ENSP000003057901217 (aa)-Q15393
ENST00000567250SF3B3-2081084--- (aa)--
Gene Model
Click here to download ENSG00000189091's gene model file
Pathways
Pathway IDPathway NameSource
hsa03040SpliceosomeKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000189091Platelet Function Tests1.0245300E-005-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000189091's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000189091SF3B310098.246ENSAPOG00000006172sf3b39893.510Acanthochromis_polyacanthus
ENSG00000189091SF3B3100100.000ENSAMEG00000002187SF3B310099.672Ailuropoda_melanoleuca
ENSG00000189091SF3B39790.909ENSACIG00000016487sf3b310090.625Amphilophus_citrinellus
ENSG00000189091SF3B310098.246ENSAOCG00000007158sf3b310093.426Amphiprion_ocellaris
ENSG00000189091SF3B310098.246ENSAPEG00000022786sf3b310093.426Amphiprion_percula
ENSG00000189091SF3B310098.246ENSATEG00000013708sf3b310093.509Anabas_testudineus
ENSG00000189091SF3B3100100.000ENSAPLG00000004996SF3B310098.176Anas_platyrhynchos
ENSG00000189091SF3B3100100.000ENSACAG00000001817SF3B310098.603Anolis_carolinensis
ENSG00000189091SF3B3100100.000ENSANAG00000028001SF3B3100100.000Aotus_nancymaae
ENSG00000189091SF3B310098.246ENSACLG00000022555sf3b39893.168Astatotilapia_calliptera
ENSG00000189091SF3B310096.774ENSAMXG00000003410sf3b310093.180Astyanax_mexicanus
ENSG00000189091SF3B3100100.000ENSBTAG00000010627SF3B3100100.000Bos_taurus
ENSG00000189091SF3B39873.214WBGene00019323teg-410060.618Caenorhabditis_elegans
ENSG00000189091SF3B3100100.000ENSCJAG00000014773SF3B399100.000Callithrix_jacchus
ENSG00000189091SF3B3100100.000ENSCAFG00000020151SF3B310099.918Canis_familiaris
ENSG00000189091SF3B3100100.000ENSCAFG00020020912SF3B310099.918Canis_lupus_dingo
ENSG00000189091SF3B3100100.000ENSCHIG00000019822SF3B310099.918Capra_hircus
ENSG00000189091SF3B3100100.000ENSTSYG00000007910SF3B3100100.000Carlito_syrichta
ENSG00000189091SF3B3100100.000ENSCAPG00000001484SF3B39289.016Cavia_aperea
ENSG00000189091SF3B3100100.000ENSCPOG00000000586SF3B310098.685Cavia_porcellus
ENSG00000189091SF3B3100100.000ENSCCAG00000017736SF3B3100100.000Cebus_capucinus
ENSG00000189091SF3B3100100.000ENSCATG00000036562SF3B3100100.000Cercocebus_atys
ENSG00000189091SF3B3100100.000ENSCLAG00000003921SF3B3100100.000Chinchilla_lanigera
ENSG00000189091SF3B3100100.000ENSCSAG00000004371SF3B310099.918Chlorocebus_sabaeus
ENSG00000189091SF3B3100100.000ENSCHOG00000001878SF3B39092.835Choloepus_hoffmanni
ENSG00000189091SF3B3100100.000ENSCPBG00000015853SF3B310098.850Chrysemys_picta_bellii
ENSG00000189091SF3B310084.722ENSCING00000001342-10080.788Ciona_intestinalis
ENSG00000189091SF3B310084.211ENSCSAVG00000011454-10079.475Ciona_savignyi
ENSG00000189091SF3B3100100.000ENSCANG00000042920SF3B310096.713Colobus_angolensis_palliatus
ENSG00000189091SF3B3100100.000ENSCGRG00001015908Sf3b310099.918Cricetulus_griseus_chok1gshd
ENSG00000189091SF3B3100100.000ENSCGRG00000010180Sf3b310099.918Cricetulus_griseus_crigri
ENSG00000189091SF3B310098.246ENSCSEG00000014192sf3b39992.515Cynoglossus_semilaevis
ENSG00000189091SF3B310093.548ENSCVAG00000010459sf3b310092.605Cyprinodon_variegatus
ENSG00000189091SF3B310096.491ENSDARG00000103553sf3b310093.426Danio_rerio
ENSG00000189091SF3B397100.000ENSDNOG00000043626SF3B3100100.000Dasypus_novemcinctus
ENSG00000189091SF3B3100100.000ENSDORG00000014176Sf3b3100100.000Dipodomys_ordii
ENSG00000189091SF3B310096.774FBgn0035162Sf3b310075.143Drosophila_melanogaster
ENSG00000189091SF3B3100100.000ENSETEG00000002729SF3B384100.000Echinops_telfairi
ENSG00000189091SF3B310090.323ENSEBUG00000006117sf3b310087.757Eptatretus_burgeri
ENSG00000189091SF3B3100100.000ENSEASG00005013376SF3B310099.918Equus_asinus_asinus
ENSG00000189091SF3B3100100.000ENSECAG00000014053SF3B310099.918Equus_caballus
ENSG00000189091SF3B3100100.000ENSEEUG00000015611SF3B39399.643Erinaceus_europaeus
ENSG00000189091SF3B310098.246ENSELUG00000015417sf3b310091.393Esox_lucius
ENSG00000189091SF3B3100100.000ENSFCAG00000009487SF3B310099.918Felis_catus
ENSG00000189091SF3B3100100.000ENSFALG00000007372SF3B310098.932Ficedula_albicollis
ENSG00000189091SF3B3100100.000ENSFDAG00000002608SF3B310099.918Fukomys_damarensis
ENSG00000189091SF3B310096.774ENSFHEG00000017824sf3b310093.016Fundulus_heteroclitus
ENSG00000189091SF3B310096.491ENSGMOG00000008139sf3b310089.409Gadus_morhua
ENSG00000189091SF3B3100100.000ENSGALG00000002531SF3B310099.178Gallus_gallus
ENSG00000189091SF3B310096.774ENSGAFG00000015206sf3b310092.605Gambusia_affinis
ENSG00000189091SF3B310098.246ENSGACG00000002646sf3b310093.021Gasterosteus_aculeatus
ENSG00000189091SF3B3100100.000ENSGAGG00000006746SF3B39798.890Gopherus_agassizii
ENSG00000189091SF3B3100100.000ENSGGOG00000003246SF3B3100100.000Gorilla_gorilla
ENSG00000189091SF3B39790.909ENSHBUG00000005960sf3b310086.875Haplochromis_burtoni
ENSG00000189091SF3B3100100.000ENSHGLG00000010135SF3B3100100.000Heterocephalus_glaber_female
ENSG00000189091SF3B3100100.000ENSHGLG00100011148SF3B310097.810Heterocephalus_glaber_male
ENSG00000189091SF3B310098.246ENSHCOG00000011981sf3b310092.687Hippocampus_comes
ENSG00000189091SF3B310094.737ENSIPUG00000020435sf3b310093.098Ictalurus_punctatus
ENSG00000189091SF3B3100100.000ENSSTOG00000007065SF3B3100100.000Ictidomys_tridecemlineatus
ENSG00000189091SF3B3100100.000ENSJJAG00000003948Sf3b3100100.000Jaculus_jaculus
ENSG00000189091SF3B310096.774ENSKMAG00000004066sf3b39992.997Kryptolebias_marmoratus
ENSG00000189091SF3B310096.491ENSLBEG00000018302sf3b310092.933Labrus_bergylta
ENSG00000189091SF3B3100100.000ENSLACG00000012501SF3B39992.276Latimeria_chalumnae
ENSG00000189091SF3B3100100.000ENSLOCG00000007566sf3b310094.089Lepisosteus_oculatus
ENSG00000189091SF3B3100100.000ENSLAFG00000012219SF3B310099.918Loxodonta_africana
ENSG00000189091SF3B3100100.000ENSMFAG00000045487SF3B3100100.000Macaca_fascicularis
ENSG00000189091SF3B3100100.000ENSMMUG00000017812SF3B3100100.000Macaca_mulatta
ENSG00000189091SF3B3100100.000ENSMNEG00000033385SF3B3100100.000Macaca_nemestrina
ENSG00000189091SF3B3100100.000ENSMLEG00000043891SF3B397100.000Mandrillus_leucophaeus
ENSG00000189091SF3B310098.246ENSMAMG00000016837sf3b310093.509Mastacembelus_armatus
ENSG00000189091SF3B310098.246ENSMZEG00005010836sf3b310093.098Maylandia_zebra
ENSG00000189091SF3B39790.909ENSMZEG00005026015sf3b39990.194Maylandia_zebra
ENSG00000189091SF3B3100100.000ENSMGAG00000001597SF3B310099.178Meleagris_gallopavo
ENSG00000189091SF3B3100100.000ENSMAUG00000013618Sf3b39583.069Mesocricetus_auratus
ENSG00000189091SF3B3100100.000ENSMICG00000001363SF3B310098.852Microcebus_murinus
ENSG00000189091SF3B3100100.000ENSMOCG00000006108Sf3b310099.918Microtus_ochrogaster
ENSG00000189091SF3B39793.182ENSMMOG00000002598sf3b39790.564Mola_mola
ENSG00000189091SF3B3100100.000ENSMODG00000014363SF3B310095.320Monodelphis_domestica
ENSG00000189091SF3B310098.246ENSMALG00000008014sf3b310093.180Monopterus_albus
ENSG00000189091SF3B3100100.000MGP_CAROLIEiJ_G0031563Sf3b310099.836Mus_caroli
ENSG00000189091SF3B3100100.000ENSMUSG00000033732Sf3b310099.918Mus_musculus
ENSG00000189091SF3B3100100.000MGP_SPRETEiJ_G0032681Sf3b310099.836Mus_spretus
ENSG00000189091SF3B3100100.000ENSMPUG00000010277SF3B310099.918Mustela_putorius_furo
ENSG00000189091SF3B3100100.000ENSMLUG00000014607SF3B310099.836Myotis_lucifugus
ENSG00000189091SF3B3100100.000ENSNGAG00000021903Sf3b3100100.000Nannospalax_galili
ENSG00000189091SF3B38397.222ENSNBRG00000007197sf3b39997.222Neolamprologus_brichardi
ENSG00000189091SF3B3100100.000ENSNLEG00000016127SF3B399100.000Nomascus_leucogenys
ENSG00000189091SF3B3100100.000ENSMEUG00000004479SF3B39498.945Notamacropus_eugenii
ENSG00000189091SF3B3100100.000ENSOPRG00000009847SF3B310096.731Ochotona_princeps
ENSG00000189091SF3B3100100.000ENSODEG00000014154SF3B310099.918Octodon_degus
ENSG00000189091SF3B310098.246ENSONIG00000011198sf3b310093.344Oreochromis_niloticus
ENSG00000189091SF3B3100100.000ENSOANG00000001161-10099.671Ornithorhynchus_anatinus
ENSG00000189091SF3B3100100.000ENSOCUG00000004139SF3B310097.617Oryctolagus_cuniculus
ENSG00000189091SF3B310096.774ENSORLG00000013472sf3b310093.180Oryzias_latipes
ENSG00000189091SF3B310096.774ENSORLG00020017473sf3b310093.180Oryzias_latipes_hni
ENSG00000189091SF3B310096.774ENSORLG00015007710sf3b310093.180Oryzias_latipes_hsok
ENSG00000189091SF3B310096.774ENSOMEG00000014483sf3b310092.851Oryzias_melastigma
ENSG00000189091SF3B3100100.000ENSOGAG00000016051SF3B310099.590Otolemur_garnettii
ENSG00000189091SF3B3100100.000ENSOARG00000004816SF3B310099.672Ovis_aries
ENSG00000189091SF3B3100100.000ENSPPAG00000026807SF3B3100100.000Pan_paniscus
ENSG00000189091SF3B3100100.000ENSPPRG00000001686SF3B310099.918Panthera_pardus
ENSG00000189091SF3B397100.000ENSPTIG00000020382SF3B310096.872Panthera_tigris_altaica
ENSG00000189091SF3B3100100.000ENSPTRG00000008308SF3B3100100.000Pan_troglodytes
ENSG00000189091SF3B3100100.000ENSPANG00000024075SF3B3100100.000Papio_anubis
ENSG00000189091SF3B3100100.000ENSPKIG00000002712sf3b310092.769Paramormyrops_kingsleyae
ENSG00000189091SF3B397100.000ENSPSIG00000002232SF3B310098.988Pelodiscus_sinensis
ENSG00000189091SF3B3100100.000ENSPEMG00000008603Sf3b310099.918Peromyscus_maniculatus_bairdii
ENSG00000189091SF3B310093.548ENSPMAG00000001793sf3b310091.865Petromyzon_marinus
ENSG00000189091SF3B3100100.000ENSPCIG00000014927SF3B310099.671Phascolarctos_cinereus
ENSG00000189091SF3B310096.774ENSPFOG00000015516sf3b310092.687Poecilia_formosa
ENSG00000189091SF3B310096.774ENSPLAG00000014330sf3b310092.687Poecilia_latipinna
ENSG00000189091SF3B310096.774ENSPMEG00000019856sf3b310092.769Poecilia_mexicana
ENSG00000189091SF3B310096.774ENSPREG00000019669sf3b39793.598Poecilia_reticulata
ENSG00000189091SF3B3100100.000ENSPPYG00000007539SF3B310099.903Pongo_abelii
ENSG00000189091SF3B3100100.000ENSPCAG00000002623SF3B310078.225Procavia_capensis
ENSG00000189091SF3B3100100.000ENSPCOG00000026582SF3B3100100.000Propithecus_coquereli
ENSG00000189091SF3B3100100.000ENSPVAG00000000684SF3B310099.836Pteropus_vampyrus
ENSG00000189091SF3B310098.246ENSPNYG00000003528sf3b310093.180Pundamilia_nyererei
ENSG00000189091SF3B3100100.000ENSPNAG00000015419sf3b310093.509Pygocentrus_nattereri
ENSG00000189091SF3B3100100.000ENSRNOG00000017724Sf3b310099.918Rattus_norvegicus
ENSG00000189091SF3B3100100.000ENSRBIG00000021904SF3B3100100.000Rhinopithecus_bieti
ENSG00000189091SF3B3100100.000ENSRROG00000045703SF3B3100100.000Rhinopithecus_roxellana
ENSG00000189091SF3B3100100.000ENSSBOG00000029156SF3B3100100.000Saimiri_boliviensis_boliviensis
ENSG00000189091SF3B3100100.000ENSSHAG00000000372SF3B310099.671Sarcophilus_harrisii
ENSG00000189091SF3B310096.774ENSSFOG00015012877sf3b310093.755Scleropages_formosus
ENSG00000189091SF3B310096.491ENSSMAG00000014386sf3b310092.851Scophthalmus_maximus
ENSG00000189091SF3B310098.246ENSSDUG00000021201sf3b310093.591Seriola_dumerili
ENSG00000189091SF3B310098.246ENSSLDG00000017532sf3b310093.509Seriola_lalandi_dorsalis
ENSG00000189091SF3B3100100.000ENSSARG00000006917SF3B393100.000Sorex_araneus
ENSG00000189091SF3B3100100.000ENSSPUG00000006253SF3B310098.932Sphenodon_punctatus
ENSG00000189091SF3B310098.246ENSSPAG00000003125sf3b310085.703Stegastes_partitus
ENSG00000189091SF3B3100100.000ENSSSCG00000025323SF3B310099.918Sus_scrofa
ENSG00000189091SF3B3100100.000ENSTGUG00000006082SF3B310099.097Taeniopygia_guttata
ENSG00000189091SF3B310096.491ENSTNIG00000004857sf3b310093.107Tetraodon_nigroviridis
ENSG00000189091SF3B3100100.000ENSTBEG00000002946SF3B310084.771Tupaia_belangeri
ENSG00000189091SF3B3100100.000ENSTTRG00000005855SF3B310099.096Tursiops_truncatus
ENSG00000189091SF3B3100100.000ENSUAMG00000006780SF3B310099.918Ursus_americanus
ENSG00000189091SF3B3100100.000ENSUMAG00000017757SF3B310099.918Ursus_maritimus
ENSG00000189091SF3B3100100.000ENSVPAG00000003202SF3B310083.730Vicugna_pacos
ENSG00000189091SF3B3100100.000ENSVVUG00000017922SF3B310099.836Vulpes_vulpes
ENSG00000189091SF3B310096.713ENSXETG00000032869SF3B310096.713Xenopus_tropicalis
ENSG00000189091SF3B310096.774ENSXCOG00000013628sf3b39794.161Xiphophorus_couchianus
ENSG00000189091SF3B310096.774ENSXMAG00000006334sf3b39993.801Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000375RNA splicing, via transesterification reactions10490618.TASProcess
GO:0000398mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome11991638.ICProcess
GO:0000398mRNA splicing, via spliceosome28781166.29360106.IDAProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0005515protein binding25036637.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus28781166.29360106.IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005689U12-type spliceosomal complex15146077.IDAComponent
GO:0005730nucleolus-IDAComponent
GO:0042177negative regulation of protein catabolic process23951410.IDAProcess
GO:0044877protein-containing complex binding11564863.IPIFunction
GO:0071005U2-type precatalytic spliceosome28781166.29360106.IDAComponent
GO:0071013catalytic step 2 spliceosome11991638.IDAComponent

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