EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000189306 (Gene tree)
Gene ID: 27341
Gene Symbol: RRP7A
Alias: CGI-96|Rrp7
Full Name: ribosomal RNA processing 7 homolog A
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Minus strand
Length: 11,489 bases
Position: chr22:42,508,335-42,519,823
Accession: 24286
RBP type: canonical RBP
Summary: (Ribosomal RNA Processing 7 Homolog A) is a Protein Coding gene. Among its related pathways are rRNA processing in the nucleus and cytosol and Gene Expression. Gene Ontology (GO) annotations related to this gene include nucleotide binding.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000321449	RRP7	PF12923.7	1.2e-34	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
22658674	Insights into RNA biology from an atlas of mammalian mRNA-binding proteins	RIC & Hela	2012 May 31	Castello A	DOI: 10.1016/j.cell.2012.04.031
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000416699	RRP7A-202	687	-	ENSP00000405547	53 (aa)	-	F8WAT7
ENST00000323013	RRP7A-201	3801	-	ENSP00000321449	280 (aa)	-	Q9Y3A4
ENST00000483303	RRP7A-203	580	-	-	- (aa)	-	-

Gene Model

Click here to download ENSG00000189306's gene model file

Pathways

Pathway ID	Pathway Name	Source
hsa03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000189306's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000189306	RRP7A	93	48.120	ENSAPOG00000021250	rrp7a	98	47.529	Acanthochromis_polyacanthus
ENSG00000189306	RRP7A	100	87.500	ENSAMEG00000009503	RRP7A	100	87.500	Ailuropoda_melanoleuca
ENSG00000189306	RRP7A	93	49.814	ENSACIG00000023067	rrp7a	94	49.254	Amphilophus_citrinellus
ENSG00000189306	RRP7A	100	47.902	ENSAOCG00000004115	rrp7a	94	48.872	Amphiprion_ocellaris
ENSG00000189306	RRP7A	100	47.902	ENSAPEG00000013688	rrp7a	99	48.302	Amphiprion_percula
ENSG00000189306	RRP7A	100	45.804	ENSATEG00000009664	rrp7a	100	46.503	Anabas_testudineus
ENSG00000189306	RRP7A	94	66.288	ENSACAG00000003579	RRP7A	94	66.288	Anolis_carolinensis
ENSG00000189306	RRP7A	100	94.286	ENSANAG00000031200	RRP7A	100	94.286	Aotus_nancymaae
ENSG00000189306	RRP7A	93	52.612	ENSACLG00000016790	rrp7a	94	51.311	Astatotilapia_calliptera
ENSG00000189306	RRP7A	93	47.566	ENSAMXG00000007921	rrp7a	90	46.992	Astyanax_mexicanus
ENSG00000189306	RRP7A	94	87.121	ENSBTAG00000016510	RRP7A	100	85.357	Bos_taurus
ENSG00000189306	RRP7A	100	92.143	ENSCJAG00000009668	RRP7A	100	92.143	Callithrix_jacchus
ENSG00000189306	RRP7A	96	87.361	ENSCAFG00000000965	RRP7	100	86.786	Canis_familiaris
ENSG00000189306	RRP7A	96	87.361	ENSCAFG00020000251	RRP7A	100	86.786	Canis_lupus_dingo
ENSG00000189306	RRP7A	100	86.786	ENSCHIG00000026787	RRP7A	100	86.786	Capra_hircus
ENSG00000189306	RRP7A	95	88.764	ENSTSYG00000000198	RRP7A	100	88.571	Carlito_syrichta
ENSG00000189306	RRP7A	93	87.739	ENSCAPG00000002325	RRP7A	100	87.739	Cavia_aperea
ENSG00000189306	RRP7A	100	87.500	ENSCPOG00000030547	RRP7A	100	87.500	Cavia_porcellus
ENSG00000189306	RRP7A	100	76.071	ENSCCAG00000021486	RRP7A	100	76.071	Cebus_capucinus
ENSG00000189306	RRP7A	100	86.786	ENSCLAG00000016715	RRP7A	100	86.786	Chinchilla_lanigera
ENSG00000189306	RRP7A	100	95.000	ENSCSAG00000005657	RRP7A	100	95.000	Chlorocebus_sabaeus
ENSG00000189306	RRP7A	94	70.833	ENSCPBG00000021814	RRP7A	95	70.833	Chrysemys_picta_bellii
ENSG00000189306	RRP7A	81	42.616	ENSCSAVG00000002555	-	90	42.616	Ciona_savignyi
ENSG00000189306	RRP7A	67	78.788	ENSCGRG00001021873	-	100	78.788	Cricetulus_griseus_chok1gshd
ENSG00000189306	RRP7A	81	83.260	ENSCGRG00001005713	-	100	83.260	Cricetulus_griseus_chok1gshd
ENSG00000189306	RRP7A	99	76.895	ENSCGRG00000000552	-	99	76.895	Cricetulus_griseus_crigri
ENSG00000189306	RRP7A	100	82.500	ENSCGRG00000009567	-	100	82.500	Cricetulus_griseus_crigri
ENSG00000189306	RRP7A	91	76.471	ENSCGRG00000000540	-	100	76.471	Cricetulus_griseus_crigri
ENSG00000189306	RRP7A	93	50.752	ENSCSEG00000007185	rrp7a	94	51.128	Cynoglossus_semilaevis
ENSG00000189306	RRP7A	93	48.519	ENSCVAG00000004349	rrp7a	94	49.438	Cyprinodon_variegatus
ENSG00000189306	RRP7A	95	44.891	ENSDARG00000098934	rrp7a	98	44.891	Danio_rerio
ENSG00000189306	RRP7A	100	86.429	ENSDNOG00000037442	RRP7A	92	86.429	Dasypus_novemcinctus
ENSG00000189306	RRP7A	100	85.000	ENSDORG00000016138	Rrp7a	100	85.000	Dipodomys_ordii
ENSG00000189306	RRP7A	93	35.985	FBgn0031764	CG9107	98	35.985	Drosophila_melanogaster
ENSG00000189306	RRP7A	91	87.059	ENSETEG00000018025	RRP7A	100	87.059	Echinops_telfairi
ENSG00000189306	RRP7A	93	46.415	ENSEBUG00000010231	rrp7a	91	46.415	Eptatretus_burgeri
ENSG00000189306	RRP7A	95	88.390	ENSEASG00005000804	RRP7A	100	86.786	Equus_asinus_asinus
ENSG00000189306	RRP7A	95	88.764	ENSECAG00000015168	RRP7	100	87.143	Equus_caballus
ENSG00000189306	RRP7A	93	47.727	ENSELUG00000009036	rrp7a	94	49.242	Esox_lucius
ENSG00000189306	RRP7A	100	86.429	ENSFCAG00000033258	RRP7A	79	86.429	Felis_catus
ENSG00000189306	RRP7A	91	65.759	ENSFALG00000011635	RRP7A	87	66.023	Ficedula_albicollis
ENSG00000189306	RRP7A	99	87.455	ENSFDAG00000001321	RRP7A	100	87.455	Fukomys_damarensis
ENSG00000189306	RRP7A	93	50.370	ENSFHEG00000006098	rrp7a	91	50.370	Fundulus_heteroclitus
ENSG00000189306	RRP7A	93	48.302	ENSGMOG00000006218	rrp7a	99	48.302	Gadus_morhua
ENSG00000189306	RRP7A	97	65.328	ENSGALG00000011866	RRP7A	99	65.328	Gallus_gallus
ENSG00000189306	RRP7A	94	47.584	ENSGAFG00000017459	rrp7a	95	47.388	Gambusia_affinis
ENSG00000189306	RRP7A	93	49.813	ENSGACG00000007212	rrp7a	99	49.064	Gasterosteus_aculeatus
ENSG00000189306	RRP7A	94	70.076	ENSGAGG00000014621	RRP7A	95	70.076	Gopherus_agassizii
ENSG00000189306	RRP7A	100	95.714	ENSGGOG00000014957	RRP7A	100	95.714	Gorilla_gorilla
ENSG00000189306	RRP7A	93	52.612	ENSHBUG00000021788	rrp7a	94	51.311	Haplochromis_burtoni
ENSG00000189306	RRP7A	100	84.806	ENSHGLG00000015706	RRP7A	100	84.806	Heterocephalus_glaber_female
ENSG00000189306	RRP7A	96	86.617	ENSHGLG00100008187	-	97	86.617	Heterocephalus_glaber_male
ENSG00000189306	RRP7A	100	82.562	ENSHGLG00100009556	-	100	82.562	Heterocephalus_glaber_male
ENSG00000189306	RRP7A	93	48.315	ENSHCOG00000005813	rrp7a	82	48.689	Hippocampus_comes
ENSG00000189306	RRP7A	93	50.752	ENSIPUG00000000556	rrp7a	95	50.752	Ictalurus_punctatus
ENSG00000189306	RRP7A	100	87.500	ENSSTOG00000003111	RRP7A	100	87.500	Ictidomys_tridecemlineatus
ENSG00000189306	RRP7A	100	85.000	ENSJJAG00000019486	Rrp7a	100	85.000	Jaculus_jaculus
ENSG00000189306	RRP7A	93	48.689	ENSKMAG00000013819	rrp7a	94	48.689	Kryptolebias_marmoratus
ENSG00000189306	RRP7A	96	61.481	ENSLACG00000002670	RRP7A	99	61.481	Latimeria_chalumnae
ENSG00000189306	RRP7A	100	86.429	ENSLAFG00000012447	RRP7A	100	86.429	Loxodonta_africana
ENSG00000189306	RRP7A	100	87.544	ENSMFAG00000041664	-	100	85.069	Macaca_fascicularis
ENSG00000189306	RRP7A	100	97.857	ENSMFAG00000042855	RRP7A	100	97.857	Macaca_fascicularis
ENSG00000189306	RRP7A	100	84.286	ENSMMUG00000009716	RRP7A	100	84.286	Macaca_mulatta
ENSG00000189306	RRP7A	100	90.357	ENSMMUG00000010193	-	100	90.357	Macaca_mulatta
ENSG00000189306	RRP7A	100	97.500	ENSMNEG00000033705	RRP7A	100	97.500	Macaca_nemestrina
ENSG00000189306	RRP7A	93	85.057	ENSMLEG00000040230	RRP7A	99	82.955	Mandrillus_leucophaeus
ENSG00000189306	RRP7A	93	51.311	ENSMAMG00000009125	rrp7a	94	52.060	Mastacembelus_armatus
ENSG00000189306	RRP7A	93	52.612	ENSMZEG00005005197	rrp7a	94	51.311	Maylandia_zebra
ENSG00000189306	RRP7A	91	67.829	ENSMGAG00000011980	RRP7A	100	67.829	Meleagris_gallopavo
ENSG00000189306	RRP7A	100	93.929	ENSMICG00000041800	RRP7A	100	93.929	Microcebus_murinus
ENSG00000189306	RRP7A	93	48.496	ENSMMOG00000004976	rrp7a	95	48.872	Mola_mola
ENSG00000189306	RRP7A	94	71.161	ENSMODG00000006914	RRP7A	94	71.161	Monodelphis_domestica
ENSG00000189306	RRP7A	93	49.064	ENSMALG00000001933	rrp7a	94	49.813	Monopterus_albus
ENSG00000189306	RRP7A	100	83.929	MGP_CAROLIEiJ_G0020092	Rrp7a	100	83.929	Mus_caroli
ENSG00000189306	RRP7A	100	83.929	ENSMUSG00000018040	Rrp7a	100	83.929	Mus_musculus
ENSG00000189306	RRP7A	100	83.929	MGP_PahariEiJ_G0020099	Rrp7a	100	83.929	Mus_pahari
ENSG00000189306	RRP7A	100	83.929	MGP_SPRETEiJ_G0020990	Rrp7a	100	83.929	Mus_spretus
ENSG00000189306	RRP7A	100	87.500	ENSMPUG00000016315	RRP7A	100	87.500	Mustela_putorius_furo
ENSG00000189306	RRP7A	95	88.015	ENSMLUG00000012404	RRP7A	100	87.857	Myotis_lucifugus
ENSG00000189306	RRP7A	100	84.643	ENSNGAG00000010039	Rrp7a	100	84.643	Nannospalax_galili
ENSG00000189306	RRP7A	93	51.311	ENSNBRG00000001824	rrp7a	95	52.434	Neolamprologus_brichardi
ENSG00000189306	RRP7A	100	97.500	ENSNLEG00000036258	RRP7A	100	97.500	Nomascus_leucogenys
ENSG00000189306	RRP7A	100	86.071	ENSODEG00000015126	RRP7A	100	86.071	Octodon_degus
ENSG00000189306	RRP7A	93	50.562	ENSONIG00000008364	rrp7a	94	51.685	Oreochromis_niloticus
ENSG00000189306	RRP7A	84	62.185	ENSOANG00000015007	RRP7A	88	62.185	Ornithorhynchus_anatinus
ENSG00000189306	RRP7A	99	80.287	ENSOCUG00000027434	RRP7A	100	80.287	Oryctolagus_cuniculus
ENSG00000189306	RRP7A	93	47.566	ENSORLG00000014826	rrp7a	94	47.566	Oryzias_latipes
ENSG00000189306	RRP7A	93	47.566	ENSORLG00020006078	rrp7a	94	47.566	Oryzias_latipes_hni
ENSG00000189306	RRP7A	93	46.816	ENSORLG00015018190	rrp7a	94	46.067	Oryzias_latipes_hsok
ENSG00000189306	RRP7A	93	46.442	ENSOMEG00000007090	rrp7a	95	46.442	Oryzias_melastigma
ENSG00000189306	RRP7A	100	89.286	ENSOGAG00000002857	RRP7A	100	89.286	Otolemur_garnettii
ENSG00000189306	RRP7A	100	86.786	ENSOARG00000018986	RRP7A	100	86.786	Ovis_aries
ENSG00000189306	RRP7A	76	98.113	ENSPPAG00000021416	-	84	89.212	Pan_paniscus
ENSG00000189306	RRP7A	75	84.211	ENSPPAG00000029825	-	85	84.211	Pan_paniscus
ENSG00000189306	RRP7A	100	86.071	ENSPPRG00000022185	RRP7A	100	86.071	Panthera_pardus
ENSG00000189306	RRP7A	100	61.806	ENSPTIG00000020965	RRP7A	100	59.375	Panthera_tigris_altaica
ENSG00000189306	RRP7A	55	98.693	ENSPTRG00000033935	-	100	98.693	Pan_troglodytes
ENSG00000189306	RRP7A	100	97.143	ENSPANG00000025354	-	100	97.143	Papio_anubis
ENSG00000189306	RRP7A	100	90.357	ENSPANG00000032001	-	100	90.000	Papio_anubis
ENSG00000189306	RRP7A	93	49.254	ENSPKIG00000007209	rrp7a	81	50.186	Paramormyrops_kingsleyae
ENSG00000189306	RRP7A	94	69.811	ENSPSIG00000007988	RRP7A	99	69.811	Pelodiscus_sinensis
ENSG00000189306	RRP7A	91	42.248	ENSPMGG00000009485	rrp7a	90	41.634	Periophthalmus_magnuspinnatus
ENSG00000189306	RRP7A	100	84.286	ENSPEMG00000022265	Rrp7a	100	84.286	Peromyscus_maniculatus_bairdii
ENSG00000189306	RRP7A	100	49.291	ENSPMAG00000002823	rrp7a	100	49.291	Petromyzon_marinus
ENSG00000189306	RRP7A	100	71.786	ENSPCIG00000026195	RRP7A	100	71.786	Phascolarctos_cinereus
ENSG00000189306	RRP7A	93	47.407	ENSPFOG00000001042	rrp7a	94	48.315	Poecilia_formosa
ENSG00000189306	RRP7A	67	48.980	ENSPLAG00000010787	-	72	52.326	Poecilia_latipinna
ENSG00000189306	RRP7A	67	48.980	ENSPLAG00000009537	rrp7a	72	52.326	Poecilia_latipinna
ENSG00000189306	RRP7A	93	48.519	ENSPMEG00000018204	rrp7a	94	48.689	Poecilia_mexicana
ENSG00000189306	RRP7A	93	49.442	ENSPREG00000016492	rrp7a	94	49.624	Poecilia_reticulata
ENSG00000189306	RRP7A	100	96.429	ENSPPYG00000011897	RRP7A	100	96.429	Pongo_abelii
ENSG00000189306	RRP7A	100	93.571	ENSPCOG00000014018	RRP7A	100	93.571	Propithecus_coquereli
ENSG00000189306	RRP7A	90	86.905	ENSPVAG00000003330	RRP7A	100	86.905	Pteropus_vampyrus
ENSG00000189306	RRP7A	93	50.187	ENSPNYG00000020343	rrp7a	94	51.311	Pundamilia_nyererei
ENSG00000189306	RRP7A	93	49.057	ENSPNAG00000014376	rrp7a	94	49.057	Pygocentrus_nattereri
ENSG00000189306	RRP7A	100	84.286	ENSRNOG00000022896	Rrp7a	100	84.286	Rattus_norvegicus
ENSG00000189306	RRP7A	100	86.170	ENSRBIG00000040358	RRP7A	100	85.106	Rhinopithecus_bieti
ENSG00000189306	RRP7A	100	94.306	ENSRROG00000036754	RRP7A	100	94.306	Rhinopithecus_roxellana
ENSG00000189306	RRP7A	100	92.500	ENSSBOG00000009234	RRP7A	100	92.500	Saimiri_boliviensis_boliviensis
ENSG00000189306	RRP7A	74	77.670	ENSSHAG00000005715	RRP7A	99	77.670	Sarcophilus_harrisii
ENSG00000189306	RRP7A	93	55.472	ENSSFOG00015012621	rrp7a	84	54.717	Scleropages_formosus
ENSG00000189306	RRP7A	93	50.376	ENSSMAG00000004593	rrp7a	94	50.376	Scophthalmus_maximus
ENSG00000189306	RRP7A	93	49.248	ENSSDUG00000016921	rrp7a	94	49.248	Seriola_dumerili
ENSG00000189306	RRP7A	93	48.872	ENSSLDG00000024758	rrp7a	94	48.872	Seriola_lalandi_dorsalis
ENSG00000189306	RRP7A	61	95.238	ENSSARG00000002133	-	67	95.238	Sorex_araneus
ENSG00000189306	RRP7A	84	66.525	ENSSPUG00000005373	RRP7A	94	66.525	Sphenodon_punctatus
ENSG00000189306	RRP7A	99	47.552	ENSSPAG00000016048	rrp7a	100	47.368	Stegastes_partitus
ENSG00000189306	RRP7A	100	86.429	ENSSSCG00000033983	RRP7A	100	86.429	Sus_scrofa
ENSG00000189306	RRP7A	91	65.759	ENSTGUG00000009647	RRP7A	100	65.759	Taeniopygia_guttata
ENSG00000189306	RRP7A	93	48.302	ENSTRUG00000024726	rrp7a	94	48.302	Takifugu_rubripes
ENSG00000189306	RRP7A	99	48.057	ENSTNIG00000010842	rrp7a	99	48.057	Tetraodon_nigroviridis
ENSG00000189306	RRP7A	100	88.929	ENSUAMG00000026180	RRP7A	100	88.929	Ursus_americanus
ENSG00000189306	RRP7A	100	85.714	ENSUMAG00000020394	RRP7A	100	85.714	Ursus_maritimus
ENSG00000189306	RRP7A	91	88.672	ENSVVUG00000002248	-	84	73.193	Vulpes_vulpes
ENSG00000189306	RRP7A	98	58.484	ENSXETG00000013414	rrp7a	99	58.484	Xenopus_tropicalis
ENSG00000189306	RRP7A	94	47.426	ENSXCOG00000015955	rrp7a	95	47.955	Xiphophorus_couchianus
ENSG00000189306	RRP7A	94	47.601	ENSXMAG00000006165	rrp7a	95	48.134	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000028	ribosomal small subunit assembly	21873635.	IBA	Process
GO:0001825	blastocyst formation	-	IEA	Process
GO:0003723	RNA binding	22658674.	HDA	Function
GO:0005515	protein binding	25416956.	IPI	Function
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006364	rRNA processing	21873635.	IBA	Process
GO:0006364	rRNA processing	-	TAS	Process
GO:0032545	CURI complex	21873635.	IBA	Component
GO:0034456	UTP-C complex	21873635.	IBA	Component