EuRBPDB

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  • Description
  • RBDs
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000196116 (Gene tree)
Gene ID
23424
Gene Symbol
TDRD7
Alias
PCTAIRE2BP
Full Name
tudor domain containing 7
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
84,176 bases
Position
chr9:97,411,950-97,496,125
Accession
30831
RBP type
canonical RBP
Summary
The protein encoded by this gene belongs to the Tudor family of proteins. This protein contains conserved Tudor domains and LOTUS domains. It is a component of RNA granules, which function in RNA processing. Mutations in this gene have been associated with cataract formation in mouse and human. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2014]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000347444TUDORPF00567.242.1e-8413
ENSP00000347444TUDORPF00567.242.1e-8423
ENSP00000347444TUDORPF00567.242.1e-8433

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
19838299DAZL relieves miRNA-mediated repression of germline mRNAs by controlling poly(A) tail length in zebrafish.PLoS One2009 Oct 19Takeda Ydoi: 10.1371/journal.pone.0007513.
26177727Deficiency of the RNA binding protein caprin2 causes lens defects and features of Peters anomaly.Dev Dyn2015 OctDash Sdoi: 10.1002/dvdy.24303
21436445Mutations in the RNA granule component TDRD7 cause cataract and glaucoma.Science2011 Mar 25Lachke SAdoi: 10.1126/science.1195970.
23938467Linking spermatid ribonucleic acid (RNA) binding protein and retrogene diversity to reproductive success.Mol Cell Proteomics2013 NovChapman KMdoi: 10.1074/mcp.M113.030585
28115159DND protein functions as a translation repressor during zebrafish embryogenesis.Biochem Biophys Res Commun2017 Mar 4Kobayashi Mdoi: 10.1016/j.bbrc.2017.01.080
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000355295TDRD7-2013834XM_006717026ENSP000003474441098 (aa)XP_006717089Q8NHU6
ENST00000492428TDRD7-202695--- (aa)--
Gene Model
Click here to download ENSG00000196116's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000196116Platelet Function Tests5.6295359E-006-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000196116's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000196116TDRD77845.355ENSAPOG00000001625tdrd7b9946.543Acanthochromis_polyacanthus
ENSG00000196116TDRD710040.299ENSAPOG00000010149tdrd7a8940.199Acanthochromis_polyacanthus
ENSG00000196116TDRD710091.621ENSAMEG00000004876TDRD710091.621Ailuropoda_melanoleuca
ENSG00000196116TDRD79948.072ENSACIG00000014798tdrd7b9948.607Amphilophus_citrinellus
ENSG00000196116TDRD77958.031ENSACIG00000005921tdrd7a8958.031Amphilophus_citrinellus
ENSG00000196116TDRD79943.321ENSAOCG00000020295tdrd7a9043.321Amphiprion_ocellaris
ENSG00000196116TDRD79150.769ENSAPEG00000004525tdrd7a9750.769Amphiprion_percula
ENSG00000196116TDRD79564.324ENSAPEG00000019482tdrd7b9945.997Amphiprion_percula
ENSG00000196116TDRD79645.929ENSATEG00000007702tdrd7a8745.660Anabas_testudineus
ENSG00000196116TDRD77845.394ENSATEG00000017142tdrd7b9946.655Anabas_testudineus
ENSG00000196116TDRD710055.928ENSAPLG00000003551TDRD710055.928Anas_platyrhynchos
ENSG00000196116TDRD710058.717ENSACAG00000001003TDRD710058.717Anolis_carolinensis
ENSG00000196116TDRD710095.082ENSANAG00000029558TDRD710095.082Aotus_nancymaae
ENSG00000196116TDRD79563.784ENSACLG00000019610tdrd7b9946.904Astatotilapia_calliptera
ENSG00000196116TDRD79938.850ENSACLG00000000968tdrd7a10039.130Astatotilapia_calliptera
ENSG00000196116TDRD79942.610ENSAMXG00000004156tdrd7a9943.117Astyanax_mexicanus
ENSG00000196116TDRD79948.261ENSAMXG00000010917tdrd7b9948.949Astyanax_mexicanus
ENSG00000196116TDRD710090.346ENSBTAG00000003719TDRD710090.346Bos_taurus
ENSG00000196116TDRD710094.900ENSCJAG00000010731TDRD710094.900Callithrix_jacchus
ENSG00000196116TDRD710091.803ENSCAFG00000002416TDRD79991.803Canis_familiaris
ENSG00000196116TDRD710091.803ENSCAFG00020017960TDRD710091.803Canis_lupus_dingo
ENSG00000196116TDRD710090.437ENSCHIG00000004770TDRD710090.437Capra_hircus
ENSG00000196116TDRD710091.894ENSTSYG00000002462TDRD710091.894Carlito_syrichta
ENSG00000196116TDRD710077.636ENSCAPG00000000371TDRD710077.636Cavia_aperea
ENSG00000196116TDRD710085.091ENSCPOG00000000488TDRD710085.091Cavia_porcellus
ENSG00000196116TDRD78995.576ENSCCAG00000033261TDRD710095.576Cebus_capucinus
ENSG00000196116TDRD710097.541ENSCATG00000030658TDRD710097.541Cercocebus_atys
ENSG00000196116TDRD710085.636ENSCLAG00000013247TDRD710085.636Chinchilla_lanigera
ENSG00000196116TDRD710097.177ENSCSAG00000010898TDRD710097.177Chlorocebus_sabaeus
ENSG00000196116TDRD78582.870ENSCHOG00000001925TDRD79182.870Choloepus_hoffmanni
ENSG00000196116TDRD710065.277ENSCPBG00000024049TDRD710065.277Chrysemys_picta_bellii
ENSG00000196116TDRD710097.359ENSCANG00000027810TDRD710097.359Colobus_angolensis_palliatus
ENSG00000196116TDRD710086.703ENSCGRG00001024164Tdrd710086.703Cricetulus_griseus_chok1gshd
ENSG00000196116TDRD710086.703ENSCGRG00000003682Tdrd710086.703Cricetulus_griseus_crigri
ENSG00000196116TDRD78650.777ENSCSEG00000012933tdrd7a9850.777Cynoglossus_semilaevis
ENSG00000196116TDRD79945.988ENSCSEG00000009862tdrd7b9946.167Cynoglossus_semilaevis
ENSG00000196116TDRD79945.650ENSCVAG00000009022tdrd7b9946.764Cyprinodon_variegatus
ENSG00000196116TDRD78954.237ENSCVAG00000018935tdrd7a9936.364Cyprinodon_variegatus
ENSG00000196116TDRD79948.617ENSDARG00000077523tdrd7b9948.665Danio_rerio
ENSG00000196116TDRD79942.146ENSDARG00000032808tdrd7a9941.524Danio_rerio
ENSG00000196116TDRD710084.062ENSDNOG00000008838TDRD710084.062Dasypus_novemcinctus
ENSG00000196116TDRD710083.996ENSDORG00000013646Tdrd710082.605Dipodomys_ordii
ENSG00000196116TDRD79477.113ENSETEG00000002681TDRD79477.113Echinops_telfairi
ENSG00000196116TDRD78392.097ENSEASG00005022765TDRD79889.621Equus_asinus_asinus
ENSG00000196116TDRD710091.530ENSECAG00000017571TDRD710091.530Equus_caballus
ENSG00000196116TDRD77784.444ENSEEUG00000015058TDRD77784.444Erinaceus_europaeus
ENSG00000196116TDRD79947.723ENSELUG00000009732tdrd7b10048.455Esox_lucius
ENSG00000196116TDRD79848.162ENSELUG00000019702tdrd7a8848.162Esox_lucius
ENSG00000196116TDRD710091.803ENSFCAG00000002745TDRD710091.803Felis_catus
ENSG00000196116TDRD79356.425ENSFALG00000001173TDRD79756.425Ficedula_albicollis
ENSG00000196116TDRD710084.426ENSFDAG00000004359TDRD79784.426Fukomys_damarensis
ENSG00000196116TDRD79341.207ENSFHEG00000013745tdrd7a8741.878Fundulus_heteroclitus
ENSG00000196116TDRD76957.592ENSGMOG00000019035-8057.592Gadus_morhua
ENSG00000196116TDRD79943.165ENSGMOG00000013808tdrd7b9943.571Gadus_morhua
ENSG00000196116TDRD710054.020ENSGALG00000012350TDRD710054.020Gallus_gallus
ENSG00000196116TDRD79750.635ENSGAFG00000018438tdrd7b9944.983Gambusia_affinis
ENSG00000196116TDRD79940.250ENSGAFG00000016576tdrd7a8741.491Gambusia_affinis
ENSG00000196116TDRD79939.481ENSGACG00000018592tdrd7a9939.803Gasterosteus_aculeatus
ENSG00000196116TDRD79948.112ENSGACG00000019913tdrd7b9948.879Gasterosteus_aculeatus
ENSG00000196116TDRD710065.642ENSGAGG00000004100TDRD710065.642Gopherus_agassizii
ENSG00000196116TDRD710099.271ENSGGOG00000015269TDRD710099.271Gorilla_gorilla
ENSG00000196116TDRD79939.373ENSHBUG00000013469tdrd7a10039.652Haplochromis_burtoni
ENSG00000196116TDRD79946.520ENSHBUG00000000872tdrd7b9647.199Haplochromis_burtoni
ENSG00000196116TDRD710084.335ENSHGLG00000001669TDRD79784.335Heterocephalus_glaber_female
ENSG00000196116TDRD710084.244ENSHGLG00100015790TDRD79784.244Heterocephalus_glaber_male
ENSG00000196116TDRD75865.027ENSHCOG00000003166tdrd7b9965.027Hippocampus_comes
ENSG00000196116TDRD79844.898ENSHCOG00000020504tdrd7a9251.087Hippocampus_comes
ENSG00000196116TDRD79937.676ENSIPUG00000022302tdrd7a9938.387Ictalurus_punctatus
ENSG00000196116TDRD79948.057ENSIPUG00000002424tdrd79948.675Ictalurus_punctatus
ENSG00000196116TDRD710089.617ENSSTOG00000002628TDRD79789.617Ictidomys_tridecemlineatus
ENSG00000196116TDRD710085.259ENSJJAG00000012908Tdrd710084.567Jaculus_jaculus
ENSG00000196116TDRD79945.369ENSKMAG00000005794tdrd7b9946.075Kryptolebias_marmoratus
ENSG00000196116TDRD79946.067ENSLBEG00000007948tdrd7b9946.167Labrus_bergylta
ENSG00000196116TDRD79841.241ENSLBEG00000008105tdrd7a8742.222Labrus_bergylta
ENSG00000196116TDRD79957.716ENSLACG00000014886TDRD79957.716Latimeria_chalumnae
ENSG00000196116TDRD79951.165ENSLOCG00000011373tdrd7a9951.202Lepisosteus_oculatus
ENSG00000196116TDRD710088.798ENSLAFG00000005989TDRD710088.798Loxodonta_africana
ENSG00000196116TDRD710097.541ENSMFAG00000003187TDRD710097.541Macaca_fascicularis
ENSG00000196116TDRD710097.541ENSMMUG00000012275TDRD710097.541Macaca_mulatta
ENSG00000196116TDRD710097.541ENSMNEG00000035043TDRD710097.541Macaca_nemestrina
ENSG00000196116TDRD710097.177ENSMLEG00000037092TDRD710097.177Mandrillus_leucophaeus
ENSG00000196116TDRD79946.575ENSMAMG00000007837tdrd7b9947.631Mastacembelus_armatus
ENSG00000196116TDRD79943.587ENSMAMG00000015651tdrd7a8644.209Mastacembelus_armatus
ENSG00000196116TDRD79939.024ENSMZEG00005002439tdrd7a10039.304Maylandia_zebra
ENSG00000196116TDRD79463.784ENSMZEG00005004477tdrd7b9948.577Maylandia_zebra
ENSG00000196116TDRD79950.450ENSMGAG00000008737TDRD79950.450Meleagris_gallopavo
ENSG00000196116TDRD78694.488ENSMAUG00000017503Tdrd79794.488Mesocricetus_auratus
ENSG00000196116TDRD710092.441ENSMICG00000012642TDRD710092.441Microcebus_murinus
ENSG00000196116TDRD710084.517ENSMOCG00000014310Tdrd710084.517Microtus_ochrogaster
ENSG00000196116TDRD79946.957ENSMMOG00000014130tdrd7b9947.913Mola_mola
ENSG00000196116TDRD79941.904ENSMMOG00000021637tdrd7a9042.786Mola_mola
ENSG00000196116TDRD710077.879ENSMODG00000003093TDRD710077.879Monodelphis_domestica
ENSG00000196116TDRD79942.491ENSMALG00000008595tdrd7a8842.491Monopterus_albus
ENSG00000196116TDRD79944.966ENSMALG00000015644tdrd7b9945.658Monopterus_albus
ENSG00000196116TDRD710084.699MGP_CAROLIEiJ_G0025979Tdrd710084.699Mus_caroli
ENSG00000196116TDRD710083.880ENSMUSG00000035517Tdrd710083.880Mus_musculus
ENSG00000196116TDRD710083.971MGP_PahariEiJ_G0028315Tdrd710083.971Mus_pahari
ENSG00000196116TDRD710084.244MGP_SPRETEiJ_G0026942Tdrd710084.244Mus_spretus
ENSG00000196116TDRD710091.621ENSMPUG00000006366TDRD710091.621Mustela_putorius_furo
ENSG00000196116TDRD710085.428ENSMLUG00000016920TDRD710085.428Myotis_lucifugus
ENSG00000196116TDRD710086.248ENSNGAG00000019791Tdrd710085.469Nannospalax_galili
ENSG00000196116TDRD79938.740ENSNBRG00000004612tdrd7a9938.894Neolamprologus_brichardi
ENSG00000196116TDRD79650.126ENSNBRG00000005449tdrd7b9961.275Neolamprologus_brichardi
ENSG00000196116TDRD710096.812ENSNLEG00000016885TDRD710096.812Nomascus_leucogenys
ENSG00000196116TDRD76493.421ENSMEUG00000010008-7193.421Notamacropus_eugenii
ENSG00000196116TDRD710084.895ENSOPRG00000010744TDRD710084.895Ochotona_princeps
ENSG00000196116TDRD710081.351ENSODEG00000002889TDRD79981.351Octodon_degus
ENSG00000196116TDRD79939.719ENSONIG00000016203tdrd7a10040.334Oreochromis_niloticus
ENSG00000196116TDRD79563.784ENSONIG00000019919tdrd7b9948.709Oreochromis_niloticus
ENSG00000196116TDRD710086.430ENSOCUG00000000060TDRD710086.430Oryctolagus_cuniculus
ENSG00000196116TDRD79945.051ENSORLG00000003824tdrd7b9945.634Oryzias_latipes
ENSG00000196116TDRD75750.435ENSORLG00000014742-8240.487Oryzias_latipes
ENSG00000196116TDRD79945.260ENSORLG00020017036tdrd7b9946.367Oryzias_latipes_hni
ENSG00000196116TDRD79945.837ENSORLG00015014871tdrd7b9945.937Oryzias_latipes_hsok
ENSG00000196116TDRD79651.039ENSOMEG00000004099tdrd7b9945.895Oryzias_melastigma
ENSG00000196116TDRD76541.189ENSOMEG00000006501-9741.189Oryzias_melastigma
ENSG00000196116TDRD710090.628ENSOGAG00000009556TDRD710090.628Otolemur_garnettii
ENSG00000196116TDRD710090.619ENSOARG00000011287TDRD710090.619Ovis_aries
ENSG00000196116TDRD710097.632ENSPPAG00000041009TDRD710097.632Pan_paniscus
ENSG00000196116TDRD710091.985ENSPPRG00000014916TDRD710091.985Panthera_pardus
ENSG00000196116TDRD710091.985ENSPTIG00000000549TDRD710091.985Panthera_tigris_altaica
ENSG00000196116TDRD710099.636ENSPTRG00000022912TDRD710099.636Pan_troglodytes
ENSG00000196116TDRD710097.450ENSPANG00000025594TDRD710097.450Papio_anubis
ENSG00000196116TDRD79948.752ENSPKIG00000000052tdrd7a9949.333Paramormyrops_kingsleyae
ENSG00000196116TDRD710065.977ENSPSIG00000004747TDRD710065.977Pelodiscus_sinensis
ENSG00000196116TDRD79060.209ENSPMGG00000002468tdrd7a9960.209Periophthalmus_magnuspinnatus
ENSG00000196116TDRD77946.755ENSPMGG00000016935tdrd7b9660.588Periophthalmus_magnuspinnatus
ENSG00000196116TDRD710084.036ENSPEMG00000020225Tdrd710084.036Peromyscus_maniculatus_bairdii
ENSG00000196116TDRD710077.466ENSPCIG00000011622TDRD710077.466Phascolarctos_cinereus
ENSG00000196116TDRD79945.329ENSPFOG00000004017tdrd7b9946.354Poecilia_formosa
ENSG00000196116TDRD79939.876ENSPFOG00000007948tdrd7a9141.825Poecilia_formosa
ENSG00000196116TDRD79949.872ENSPLAG00000016189tdrd7b9945.068Poecilia_latipinna
ENSG00000196116TDRD79939.876ENSPLAG00000006812tdrd7a9141.825Poecilia_latipinna
ENSG00000196116TDRD79940.745ENSPMEG00000020103tdrd7a9141.825Poecilia_mexicana
ENSG00000196116TDRD79950.128ENSPMEG00000001645tdrd7b9945.200Poecilia_mexicana
ENSG00000196116TDRD79739.152ENSPREG00000000271tdrd7a9140.431Poecilia_reticulata
ENSG00000196116TDRD79564.865ENSPREG00000014720tdrd7b9945.150Poecilia_reticulata
ENSG00000196116TDRD710098.179ENSPPYG00000019423TDRD710098.179Pongo_abelii
ENSG00000196116TDRD78981.667ENSPCAG00000003439TDRD79181.667Procavia_capensis
ENSG00000196116TDRD710090.893ENSPCOG00000013739TDRD710090.893Propithecus_coquereli
ENSG00000196116TDRD77694.175ENSPVAG00000005918TDRD77694.175Pteropus_vampyrus
ENSG00000196116TDRD79944.435ENSPNYG00000001648tdrd7b9945.139Pundamilia_nyererei
ENSG00000196116TDRD79939.421ENSPNYG00000018925tdrd7a9939.702Pundamilia_nyererei
ENSG00000196116TDRD79942.706ENSPNAG00000021266tdrd7a9943.501Pygocentrus_nattereri
ENSG00000196116TDRD79949.433ENSPNAG00000011669tdrd7b9950.261Pygocentrus_nattereri
ENSG00000196116TDRD710084.973ENSRNOG00000055779Tdrd710084.973Rattus_norvegicus
ENSG00000196116TDRD710097.177ENSRBIG00000006499TDRD710097.177Rhinopithecus_bieti
ENSG00000196116TDRD710097.086ENSRROG00000035804TDRD710097.086Rhinopithecus_roxellana
ENSG00000196116TDRD710096.084ENSSBOG00000024110TDRD710096.084Saimiri_boliviensis_boliviensis
ENSG00000196116TDRD79948.796ENSSFOG00015001037tdrd79949.288Scleropages_formosus
ENSG00000196116TDRD79946.337ENSSMAG00000016140tdrd7b9346.974Scophthalmus_maximus
ENSG00000196116TDRD79841.256ENSSMAG00000018686tdrd7a8542.060Scophthalmus_maximus
ENSG00000196116TDRD79948.230ENSSDUG00000021955tdrd7b9947.982Seriola_dumerili
ENSG00000196116TDRD79942.751ENSSDUG00000010811tdrd7a9042.506Seriola_dumerili
ENSG00000196116TDRD79943.329ENSSLDG00000001530tdrd7a8843.329Seriola_lalandi_dorsalis
ENSG00000196116TDRD77845.833ENSSLDG00000023517tdrd7b9947.333Seriola_lalandi_dorsalis
ENSG00000196116TDRD79491.111ENSSARG00000013419TDRD79491.111Sorex_araneus
ENSG00000196116TDRD79762.977ENSSPUG00000008554TDRD79562.977Sphenodon_punctatus
ENSG00000196116TDRD79942.730ENSSPAG00000015110tdrd7a8842.730Stegastes_partitus
ENSG00000196116TDRD77843.090ENSSPAG00000021933tdrd7b9944.865Stegastes_partitus
ENSG00000196116TDRD710091.712ENSSSCG00000005364TDRD710091.712Sus_scrofa
ENSG00000196116TDRD79455.684ENSTGUG00000001492TDRD79955.684Taeniopygia_guttata
ENSG00000196116TDRD79637.940ENSTRUG00000015667tdrd7a8638.303Takifugu_rubripes
ENSG00000196116TDRD79945.240ENSTRUG00000005266tdrd7b9946.082Takifugu_rubripes
ENSG00000196116TDRD79936.738ENSTNIG00000018065tdrd7a9937.321Tetraodon_nigroviridis
ENSG00000196116TDRD75549.760ENSTNIG00000007021-9950.562Tetraodon_nigroviridis
ENSG00000196116TDRD79947.729ENSTNIG00000007022tdrd7b9948.168Tetraodon_nigroviridis
ENSG00000196116TDRD79495.238ENSTBEG00000007485TDRD79495.238Tupaia_belangeri
ENSG00000196116TDRD710089.827ENSTTRG00000000150TDRD710089.827Tursiops_truncatus
ENSG00000196116TDRD710092.168ENSUAMG00000005465TDRD710092.168Ursus_americanus
ENSG00000196116TDRD710092.350ENSUMAG00000011725TDRD710093.915Ursus_maritimus
ENSG00000196116TDRD710086.854ENSVPAG00000010530TDRD710086.854Vicugna_pacos
ENSG00000196116TDRD710091.985ENSVVUG00000019753TDRD710091.985Vulpes_vulpes
ENSG00000196116TDRD79953.601ENSXETG00000010171tdrd79953.601Xenopus_tropicalis
ENSG00000196116TDRD79056.545ENSXCOG00000014820tdrd7a9939.146Xiphophorus_couchianus
ENSG00000196116TDRD75263.784ENSXMAG00000008958tdrd7b9945.277Xiphophorus_maculatus
ENSG00000196116TDRD79939.975ENSXMAG00000011033tdrd7a8639.673Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0002089lens morphogenesis in camera-type eye21436445.IMPProcess
GO:0003729mRNA binding21436445.IDAFunction
GO:0005515protein binding14603251.16189514.21988832.25416956.IPIFunction
GO:0005737cytoplasm-ISSComponent
GO:0005759mitochondrial matrix-IEAComponent
GO:0007283spermatogenesis-ISSProcess
GO:0010608posttranscriptional regulation of gene expression21436445.IMPProcess
GO:0033391chromatoid body-ISSComponent
GO:0035770ribonucleoprotein granule21436445.IDAComponent
GO:0047485protein N-terminus binding-IEAFunction
GO:0070306lens fiber cell differentiation21436445.IMPProcess

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