EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000196449 (Gene tree)
Gene ID: 79693
Gene Symbol: YRDC
Alias: FLJ23476|IRIP|SUA5
Full Name: yrdC N6-threonylcarbamoyltransferase domain containing
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 5,252 bases
Position: chr1:37,802,942-37,808,193
Accession: 28905
RBP type: canonical RBP
Summary: (YrdC N6-Threonylcarbamoyltransferase Domain Containing) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include double-stranded RNA binding.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000362135	Sua5_yciO_yrdC	PF01300.18	2.2e-43	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000373044	YRDC-201	1826	-	ENSP00000362135	279 (aa)	-	Q86U90

Gene Model

Click here to download ENSG00000196449's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000196449's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000196449	YRDC	81	59.292	ENSAPOG00000024293	yrdc	85	59.292	Acanthochromis_polyacanthus
ENSG00000196449	YRDC	67	93.048	ENSAMEG00000001173	YRDC	99	93.048	Ailuropoda_melanoleuca
ENSG00000196449	YRDC	73	64.706	ENSACIG00000017330	yrdc	75	64.706	Amphilophus_citrinellus
ENSG00000196449	YRDC	81	59.735	ENSAOCG00000021647	yrdc	85	59.735	Amphiprion_ocellaris
ENSG00000196449	YRDC	73	63.235	ENSAPEG00000006164	yrdc	77	63.235	Amphiprion_percula
ENSG00000196449	YRDC	73	65.196	ENSATEG00000010086	yrdc	75	65.196	Anabas_testudineus
ENSG00000196449	YRDC	70	67.526	ENSACAG00000017203	YRDC	99	64.762	Anolis_carolinensis
ENSG00000196449	YRDC	84	92.275	ENSANAG00000028788	-	98	92.275	Aotus_nancymaae
ENSG00000196449	YRDC	98	88.768	ENSANAG00000031052	-	98	88.768	Aotus_nancymaae
ENSG00000196449	YRDC	92	55.598	ENSACLG00000027775	yrdc	94	55.598	Astatotilapia_calliptera
ENSG00000196449	YRDC	83	58.621	ENSAMXG00000037791	yrdc	86	58.621	Astyanax_mexicanus
ENSG00000196449	YRDC	99	89.209	ENSBTAG00000006510	YRDC	99	88.849	Bos_taurus
ENSG00000196449	YRDC	82	37.500	WBGene00012997	Y48C3A.18	97	37.903	Caenorhabditis_elegans
ENSG00000196449	YRDC	100	98.208	ENSCJAG00000002078	YRDC	77	98.208	Callithrix_jacchus
ENSG00000196449	YRDC	99	84.892	ENSCAFG00000003253	YRDC	99	84.892	Canis_familiaris
ENSG00000196449	YRDC	99	86.691	ENSCAFG00020007843	YRDC	99	86.691	Canis_lupus_dingo
ENSG00000196449	YRDC	100	87.857	ENSCHIG00000007882	YRDC	100	87.500	Capra_hircus
ENSG00000196449	YRDC	63	93.785	ENSTSYG00000005555	YRDC	62	93.678	Carlito_syrichta
ENSG00000196449	YRDC	99	87.770	ENSCPOG00000036144	YRDC	99	87.770	Cavia_porcellus
ENSG00000196449	YRDC	100	97.849	ENSCCAG00000028891	YRDC	100	97.849	Cebus_capucinus
ENSG00000196449	YRDC	100	98.925	ENSCATG00000036928	YRDC	100	98.925	Cercocebus_atys
ENSG00000196449	YRDC	99	88.849	ENSCLAG00000015012	YRDC	99	88.849	Chinchilla_lanigera
ENSG00000196449	YRDC	100	98.566	ENSCSAG00000001116	YRDC	100	98.566	Chlorocebus_sabaeus
ENSG00000196449	YRDC	75	86.603	ENSCHOG00000005500	YRDC	100	86.603	Choloepus_hoffmanni
ENSG00000196449	YRDC	75	68.750	ENSCPBG00000018446	YRDC	89	68.750	Chrysemys_picta_bellii
ENSG00000196449	YRDC	73	48.357	ENSCING00000007564	-	98	48.357	Ciona_intestinalis
ENSG00000196449	YRDC	73	47.867	ENSCSAVG00000009982	-	98	47.867	Ciona_savignyi
ENSG00000196449	YRDC	100	98.566	ENSCANG00000031111	YRDC	100	98.566	Colobus_angolensis_palliatus
ENSG00000196449	YRDC	98	81.818	ENSCGRG00001000829	-	77	81.818	Cricetulus_griseus_chok1gshd
ENSG00000196449	YRDC	99	87.770	ENSCGRG00001014496	-	99	87.770	Cricetulus_griseus_chok1gshd
ENSG00000196449	YRDC	75	63.158	ENSCSEG00000019075	yrdc	75	63.158	Cynoglossus_semilaevis
ENSG00000196449	YRDC	82	56.710	ENSCVAG00000017355	yrdc	85	57.018	Cyprinodon_variegatus
ENSG00000196449	YRDC	83	57.872	ENSDARG00000041428	yrdc	97	58.120	Danio_rerio
ENSG00000196449	YRDC	99	91.367	ENSDNOG00000038789	-	100	91.797	Dasypus_novemcinctus
ENSG00000196449	YRDC	73	63.592	ENSDNOG00000036198	-	100	63.592	Dasypus_novemcinctus
ENSG00000196449	YRDC	70	92.308	ENSDORG00000008788	Yrdc	86	92.308	Dipodomys_ordii
ENSG00000196449	YRDC	71	48.515	FBgn0061361	CG33786	81	48.515	Drosophila_melanogaster
ENSG00000196449	YRDC	99	75.362	ENSETEG00000003442	YRDC	99	75.362	Echinops_telfairi
ENSG00000196449	YRDC	82	51.739	ENSEBUG00000014080	yrdc	95	51.739	Eptatretus_burgeri
ENSG00000196449	YRDC	100	92.500	ENSEASG00005012253	YRDC	100	92.500	Equus_asinus_asinus
ENSG00000196449	YRDC	100	92.857	ENSECAG00000022522	YRDC	100	92.857	Equus_caballus
ENSG00000196449	YRDC	73	63.725	ENSELUG00000018071	yrdc	66	63.725	Esox_lucius
ENSG00000196449	YRDC	99	92.446	ENSFCAG00000011018	YRDC	99	92.446	Felis_catus
ENSG00000196449	YRDC	70	73.711	ENSFALG00000000964	YRDC	90	72.727	Ficedula_albicollis
ENSG00000196449	YRDC	70	30.476	ENSFALG00000011333	-	53	30.476	Ficedula_albicollis
ENSG00000196449	YRDC	82	57.143	ENSFHEG00000001029	yrdc	84	57.277	Fundulus_heteroclitus
ENSG00000196449	YRDC	73	65.196	ENSGMOG00000015635	yrdc	97	65.196	Gadus_morhua
ENSG00000196449	YRDC	70	30.952	ENSGALG00000025899	-	67	30.952	Gallus_gallus
ENSG00000196449	YRDC	95	63.534	ENSGALG00000029001	YRDC	98	63.534	Gallus_gallus
ENSG00000196449	YRDC	82	55.844	ENSGAFG00000008396	yrdc	84	56.140	Gambusia_affinis
ENSG00000196449	YRDC	81	59.052	ENSGACG00000013878	yrdc	95	59.307	Gasterosteus_aculeatus
ENSG00000196449	YRDC	80	68.750	ENSGAGG00000014968	YRDC	97	68.750	Gopherus_agassizii
ENSG00000196449	YRDC	100	100.000	ENSGGOG00000007619	YRDC	100	100.000	Gorilla_gorilla
ENSG00000196449	YRDC	92	55.985	ENSHBUG00000009298	yrdc	94	55.985	Haplochromis_burtoni
ENSG00000196449	YRDC	99	89.928	ENSHGLG00000014075	YRDC	99	89.928	Heterocephalus_glaber_female
ENSG00000196449	YRDC	99	78.417	ENSHGLG00100002734	YRDC	99	78.417	Heterocephalus_glaber_male
ENSG00000196449	YRDC	81	58.590	ENSHCOG00000006598	yrdc	88	58.850	Hippocampus_comes
ENSG00000196449	YRDC	83	58.874	ENSIPUG00000014985	yrdc	92	60.177	Ictalurus_punctatus
ENSG00000196449	YRDC	99	91.367	ENSSTOG00000001643	YRDC	99	91.367	Ictidomys_tridecemlineatus
ENSG00000196449	YRDC	81	59.825	ENSKMAG00000013468	yrdc	84	60.088	Kryptolebias_marmoratus
ENSG00000196449	YRDC	94	54.511	ENSLBEG00000027501	yrdc	97	54.511	Labrus_bergylta
ENSG00000196449	YRDC	68	32.039	ENSLACG00000017624	si:ch211-153b23.3	61	32.039	Latimeria_chalumnae
ENSG00000196449	YRDC	84	61.570	ENSLACG00000010689	YRDC	99	66.204	Latimeria_chalumnae
ENSG00000196449	YRDC	80	61.333	ENSLOCG00000003321	yrdc	93	61.333	Lepisosteus_oculatus
ENSG00000196449	YRDC	99	92.754	ENSLAFG00000017556	YRDC	99	92.754	Loxodonta_africana
ENSG00000196449	YRDC	76	99.057	ENSMFAG00000003487	YRDC	100	99.057	Macaca_fascicularis
ENSG00000196449	YRDC	100	98.925	ENSMMUG00000005372	YRDC	74	98.925	Macaca_mulatta
ENSG00000196449	YRDC	100	98.925	ENSMNEG00000029348	YRDC	100	98.925	Macaca_nemestrina
ENSG00000196449	YRDC	54	98.675	ENSMLEG00000041122	YRDC	100	98.675	Mandrillus_leucophaeus
ENSG00000196449	YRDC	81	60.793	ENSMAMG00000007315	yrdc	83	60.793	Mastacembelus_armatus
ENSG00000196449	YRDC	92	55.598	ENSMZEG00005006948	yrdc	94	55.598	Maylandia_zebra
ENSG00000196449	YRDC	73	71.220	ENSMGAG00000002833	YRDC	100	71.220	Meleagris_gallopavo
ENSG00000196449	YRDC	70	30.952	ENSMGAG00000005489	-	53	30.952	Meleagris_gallopavo
ENSG00000196449	YRDC	99	93.502	ENSMICG00000031688	YRDC	99	93.502	Microcebus_murinus
ENSG00000196449	YRDC	75	87.560	ENSMOCG00000000164	-	81	87.560	Microtus_ochrogaster
ENSG00000196449	YRDC	81	58.333	ENSMMOG00000002119	yrdc	84	58.590	Mola_mola
ENSG00000196449	YRDC	95	72.222	ENSMODG00000017750	YRDC	94	72.222	Monodelphis_domestica
ENSG00000196449	YRDC	82	60.965	ENSMALG00000012471	yrdc	85	61.233	Monopterus_albus
ENSG00000196449	YRDC	91	86.328	MGP_CAROLIEiJ_G0026453	Yrdc	98	94.175	Mus_caroli
ENSG00000196449	YRDC	99	85.971	ENSMUSG00000028889	Yrdc	100	93.333	Mus_musculus
ENSG00000196449	YRDC	99	85.252	MGP_PahariEiJ_G0028784	Yrdc	100	92.381	Mus_pahari
ENSG00000196449	YRDC	99	86.331	MGP_SPRETEiJ_G0027432	Yrdc	99	86.331	Mus_spretus
ENSG00000196449	YRDC	78	92.202	ENSMPUG00000014542	YRDC	87	92.202	Mustela_putorius_furo
ENSG00000196449	YRDC	98	67.754	ENSMLUG00000028796	-	97	67.754	Myotis_lucifugus
ENSG00000196449	YRDC	70	84.103	ENSMLUG00000024310	-	96	84.103	Myotis_lucifugus
ENSG00000196449	YRDC	99	89.130	ENSMLUG00000000955	-	98	89.781	Myotis_lucifugus
ENSG00000196449	YRDC	99	82.374	ENSNGAG00000019099	Yrdc	99	82.374	Nannospalax_galili
ENSG00000196449	YRDC	92	55.985	ENSNBRG00000009475	yrdc	95	55.985	Neolamprologus_brichardi
ENSG00000196449	YRDC	99	99.281	ENSNLEG00000011665	YRDC	100	99.281	Nomascus_leucogenys
ENSG00000196449	YRDC	76	82.160	ENSMEUG00000005068	YRDC	99	82.160	Notamacropus_eugenii
ENSG00000196449	YRDC	99	87.410	ENSODEG00000007401	YRDC	100	89.524	Octodon_degus
ENSG00000196449	YRDC	81	59.825	ENSONIG00000016213	yrdc	94	60.088	Oreochromis_niloticus
ENSG00000196449	YRDC	99	92.086	ENSOCUG00000005384	YRDC	95	92.086	Oryctolagus_cuniculus
ENSG00000196449	YRDC	73	59.804	ENSORLG00000014393	yrdc	75	59.804	Oryzias_latipes
ENSG00000196449	YRDC	81	55.652	ENSORLG00020019663	yrdc	86	55.895	Oryzias_latipes_hni
ENSG00000196449	YRDC	81	55.217	ENSORLG00015004625	yrdc	86	55.459	Oryzias_latipes_hsok
ENSG00000196449	YRDC	73	60.784	ENSOMEG00000018550	yrdc	85	56.828	Oryzias_melastigma
ENSG00000196449	YRDC	99	90.909	ENSOGAG00000030474	YRDC	100	90.909	Otolemur_garnettii
ENSG00000196449	YRDC	91	88.538	ENSOARG00000019873	YRDC	89	88.142	Ovis_aries
ENSG00000196449	YRDC	53	100.000	ENSPPAG00000039722	-	100	100.000	Pan_paniscus
ENSG00000196449	YRDC	99	92.806	ENSPPRG00000007752	YRDC	99	92.806	Panthera_pardus
ENSG00000196449	YRDC	85	66.109	ENSPTIG00000019821	YRDC	67	89.103	Panthera_tigris_altaica
ENSG00000196449	YRDC	100	99.642	ENSPTRG00000000557	YRDC	100	99.642	Pan_troglodytes
ENSG00000196449	YRDC	100	98.925	ENSPANG00000006487	YRDC	75	98.925	Papio_anubis
ENSG00000196449	YRDC	75	61.244	ENSPKIG00000004574	yrdc	76	61.244	Paramormyrops_kingsleyae
ENSG00000196449	YRDC	96	59.041	ENSPSIG00000006483	YRDC	73	68.750	Pelodiscus_sinensis
ENSG00000196449	YRDC	81	57.965	ENSPMGG00000004184	yrdc	86	57.965	Periophthalmus_magnuspinnatus
ENSG00000196449	YRDC	64	89.385	ENSPEMG00000016985	Yrdc	93	76.211	Peromyscus_maniculatus_bairdii
ENSG00000196449	YRDC	63	56.742	ENSPMAG00000002905	yrdc	96	56.742	Petromyzon_marinus
ENSG00000196449	YRDC	92	72.348	ENSPCIG00000025731	YRDC	95	71.324	Phascolarctos_cinereus
ENSG00000196449	YRDC	82	56.710	ENSPFOG00000023097	yrdc	84	57.018	Poecilia_formosa
ENSG00000196449	YRDC	82	56.277	ENSPLAG00000020882	yrdc	84	56.579	Poecilia_latipinna
ENSG00000196449	YRDC	82	56.710	ENSPMEG00000013237	yrdc	85	57.018	Poecilia_mexicana
ENSG00000196449	YRDC	82	56.710	ENSPREG00000005285	yrdc	84	57.018	Poecilia_reticulata
ENSG00000196449	YRDC	86	95.397	ENSPPYG00000001523	-	94	96.957	Pongo_abelii
ENSG00000196449	YRDC	100	86.429	ENSPCAG00000016850	YRDC	100	86.429	Procavia_capensis
ENSG00000196449	YRDC	100	92.832	ENSPCOG00000013214	YRDC	100	92.832	Propithecus_coquereli
ENSG00000196449	YRDC	99	92.391	ENSPVAG00000010147	YRDC	99	92.391	Pteropus_vampyrus
ENSG00000196449	YRDC	92	55.985	ENSPNYG00000013956	yrdc	94	55.985	Pundamilia_nyererei
ENSG00000196449	YRDC	75	59.048	ENSPNAG00000015625	yrdc	85	59.048	Pygocentrus_nattereri
ENSG00000196449	YRDC	99	86.691	ENSRNOG00000025424	Yrdc	99	86.691	Rattus_norvegicus
ENSG00000196449	YRDC	100	98.925	ENSRBIG00000032289	YRDC	100	98.925	Rhinopithecus_bieti
ENSG00000196449	YRDC	89	89.069	ENSRROG00000039370	YRDC	99	76.949	Rhinopithecus_roxellana
ENSG00000196449	YRDC	84	90.171	ENSSBOG00000018937	YRDC	94	90.171	Saimiri_boliviensis_boliviensis
ENSG00000196449	YRDC	53	81.757	ENSSHAG00000013957	-	100	81.757	Sarcophilus_harrisii
ENSG00000196449	YRDC	76	63.679	ENSSFOG00015006128	yrdc	91	63.679	Scleropages_formosus
ENSG00000196449	YRDC	75	62.736	ENSSMAG00000005195	yrdc	79	62.736	Scophthalmus_maximus
ENSG00000196449	YRDC	94	53.409	ENSSDUG00000009775	yrdc	98	53.409	Seriola_dumerili
ENSG00000196449	YRDC	54	30.000	ENSSDUG00000006736	-	83	30.000	Seriola_dumerili
ENSG00000196449	YRDC	50	30.405	ENSSDUG00000006631	-	62	30.405	Seriola_dumerili
ENSG00000196449	YRDC	94	53.409	ENSSLDG00000003196	yrdc	98	53.409	Seriola_lalandi_dorsalis
ENSG00000196449	YRDC	79	65.179	ENSSPUG00000003946	YRDC	87	65.179	Sphenodon_punctatus
ENSG00000196449	YRDC	73	60.294	ENSSPAG00000012559	yrdc	75	60.294	Stegastes_partitus
ENSG00000196449	YRDC	99	91.007	ENSSSCG00000040425	YRDC	99	91.007	Sus_scrofa
ENSG00000196449	YRDC	53	76.871	ENSTGUG00000001507	YRDC	100	76.871	Taeniopygia_guttata
ENSG00000196449	YRDC	87	51.200	ENSTRUG00000005923	yrdc	91	54.000	Takifugu_rubripes
ENSG00000196449	YRDC	57	93.038	ENSTBEG00000008863	YRDC	96	93.377	Tupaia_belangeri
ENSG00000196449	YRDC	53	90.604	ENSTTRG00000013538	-	100	90.604	Tursiops_truncatus
ENSG00000196449	YRDC	73	93.596	ENSUAMG00000006150	YRDC	100	93.596	Ursus_americanus
ENSG00000196449	YRDC	84	75.319	ENSVPAG00000006642	YRDC	97	74.449	Vicugna_pacos
ENSG00000196449	YRDC	54	88.000	ENSVVUG00000023132	-	50	88.000	Vulpes_vulpes
ENSG00000196449	YRDC	82	62.661	ENSXETG00000014420	yrdc	97	62.931	Xenopus_tropicalis
ENSG00000196449	YRDC	82	55.411	ENSXCOG00000000829	yrdc	94	55.702	Xiphophorus_couchianus
ENSG00000196449	YRDC	82	54.545	ENSXMAG00000014606	yrdc	79	54.825	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	21873635.	IBA	Function
GO:0003725	double-stranded RNA binding	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005739	mitochondrion	-	IEA	Component
GO:0006450	regulation of translational fidelity	21873635.	IBA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016779	nucleotidyltransferase activity	21873635.	IBA	Function
GO:0051051	negative regulation of transport	2675563.	IDA	Process