EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000197114 (Gene tree)
Gene ID
84619
Gene Symbol
ZGPAT
Alias
dJ583P15.3|MGC44880|FLJ14972|ZC3HDC9|ZC3H9|GPATC6|GPATCH6|ZIP|KIAA1847
Full Name
zinc finger CCCH-type and G-patch domain containing
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
28,701 bases
Position
chr20:63,707,442-63,736,142
Accession
15948
RBP type
canonical RBP
Summary
(Zinc Finger CCCH-Type And G-Patch Domain Containing) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and sequence-specific DNA binding. An important paralog of this gene is ENSG00000273154.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000349634G-patchPF01585.232.2e-1111
ENSP00000348242G-patchPF01585.232.2e-1111
ENSP00000358984G-patchPF01585.232.2e-1111
ENSP00000391176G-patchPF01585.232.2e-1111
ENSP00000332013G-patchPF01585.232.4e-1111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
28878014Identification of a 35S U4/U6.U5 tri-small nuclear ribonucleoprotein (tri-snRNP) complex intermediate in spliceosome assembly.J Biol Chem2017 Nov 3Chen Zdoi: 10.1074/jbc.M117.797357
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000431125ZGPAT-205427-ENSP0000040396697 (aa)-X6RGY1
ENST00000478385ZGPAT-210935--- (aa)--
ENST00000484569ZGPAT-211749--- (aa)--
ENST00000448100ZGPAT-2061881-ENSP00000391176511 (aa)-Q8N5A5
ENST00000472711ZGPAT-208787--- (aa)--
ENST00000477340ZGPAT-2092831--- (aa)--
ENST00000468235ZGPAT-207594--- (aa)--
ENST00000357119ZGPAT-2031896-ENSP00000349634502 (aa)-Q8N5A5
ENST00000328969ZGPAT-2011945-ENSP00000332013531 (aa)-Q8N5A5
ENST00000355969ZGPAT-2021871-ENSP00000348242511 (aa)-Q8N5A5
ENST00000369967ZGPAT-2041890-ENSP00000358984511 (aa)-Q8N5A5
Gene Model
Click here to download ENSG00000197114's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000197114Body Height3.3110000E-006-
ENSG00000197114Inflammatory Bowel Diseases1E-2323128233
ENSG00000197114Prostatic Neoplasms4E-1623535732
ENSG00000197114Inflammatory Bowel Diseases9E-1518758464
ENSG00000197114Colitis, Ulcerative1E-826192919
ENSG00000197114Crohn Disease8E-1726192919
ENSG00000197114Crohn Disease3E-1521102463
ENSG00000197114Forced Expiratory Volume4E-1328166213
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000197114rs48093302063718234GCrohn's disease21102463[1.06-1.18]1.12EFO_0000384
ENSG00000197114rs60625092063731211AProstate cancer23535732[1.09-1.16]1.12EFO_0001663
ENSG00000197114rs60625042063717555GUlcerative colitis261929191.0814869EFO_0000729
ENSG00000197114rs60625042063717555ACrohn's disease261929191.1168494EFO_0000384
ENSG00000197114rs622177982063715837TBlood protein levels29875488[0.16-0.28] unit decrease0.22EFO_0007937
ENSG00000197114rs724484662063732289?Lung function (FEV1)28166213[0.022-0.038] unit decrease0.03EFO_0004314
ENSG00000197114rs23150082063712604GInflammatory bowel disease18758464[1.05-1.76]1.36EFO_0003767
ENSG00000197114rs60625042063717555GInflammatory bowel disease23128233[1.071-1.139]1.104EFO_0003767
ENSG00000197114rs60624982063707707GAge of smoking initiation (MTAG)30643251[0.0069-0.013] unit decrease0.00993772EFO_0005670
ENSG00000197114rs37611232063711116ASmoking cessation (MTAG)30643251[0.0091-0.0156] unit increase0.0123519EFO_0004319
ENSG00000197114rs60625092063731211TProstate cancer29892016[1.06-1.10]1.08EFO_0001663
ENSG00000197114rs23150082063712604TC-reactive protein levels30388399[0.015-0.031] unit decrease0.023EFO_0004458
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000197114's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000197114ZGPAT10052.975ENSAPOG00000001732zgpat10052.453Acanthochromis_polyacanthus
ENSG00000197114ZGPAT10079.497ENSAMEG00000001752-10078.530Ailuropoda_melanoleuca
ENSG00000197114ZGPAT10051.515ENSACIG00000015939zgpat10051.124Amphilophus_citrinellus
ENSG00000197114ZGPAT10052.281ENSAOCG00000014437zgpat10051.880Amphiprion_ocellaris
ENSG00000197114ZGPAT10052.281ENSAPEG00000006555zgpat10052.068Amphiprion_percula
ENSG00000197114ZGPAT10052.134ENSATEG00000003346zgpat10050.919Anabas_testudineus
ENSG00000197114ZGPAT10064.232ENSAPLG00000014707-10064.193Anas_platyrhynchos
ENSG00000197114ZGPAT9161.992ENSACAG00000012278-10061.323Anolis_carolinensis
ENSG00000197114ZGPAT10092.188ENSANAG00000035708ZGPAT10092.773Aotus_nancymaae
ENSG00000197114ZGPAT10051.970ENSACLG00000013778zgpat10053.084Astatotilapia_calliptera
ENSG00000197114ZGPAT10046.904ENSAMXG00000018583zgpat10048.037Astyanax_mexicanus
ENSG00000197114ZGPAT10079.806ENSBTAG00000007498ZGPAT10078.641Bos_taurus
ENSG00000197114ZGPAT10090.310ENSCJAG00000010398ZGPAT10090.891Callithrix_jacchus
ENSG00000197114ZGPAT9976.641ENSCAFG00000013056ZGPAT9975.670Canis_familiaris
ENSG00000197114ZGPAT10076.482ENSCAFG00020001956-10075.717Canis_lupus_dingo
ENSG00000197114ZGPAT10080.000ENSCHIG00000026209-10078.835Capra_hircus
ENSG00000197114ZGPAT9681.363ENSTSYG00000000795ZGPAT9781.000Carlito_syrichta
ENSG00000197114ZGPAT5485.417ENSCAPG00000009466-10085.417Cavia_aperea
ENSG00000197114ZGPAT10079.537ENSCPOG00000014427ZGPAT10079.651Cavia_porcellus
ENSG00000197114ZGPAT10092.383ENSCCAG00000035441ZGPAT10092.773Cebus_capucinus
ENSG00000197114ZGPAT10097.065ENSCATG00000034076ZGPAT10097.065Cercocebus_atys
ENSG00000197114ZGPAT10082.171ENSCLAG00000004087ZGPAT10081.589Chinchilla_lanigera
ENSG00000197114ZGPAT10095.669ENSCSAG00000016628ZGPAT10095.669Chlorocebus_sabaeus
ENSG00000197114ZGPAT6668.246ENSCHOG00000013646-8468.246Choloepus_hoffmanni
ENSG00000197114ZGPAT10064.312ENSCPBG00000014736-9962.862Chrysemys_picta_bellii
ENSG00000197114ZGPAT10097.260ENSCANG00000041082ZGPAT10097.260Colobus_angolensis_palliatus
ENSG00000197114ZGPAT10079.183ENSCGRG00001011442Zgpat10079.961Cricetulus_griseus_chok1gshd
ENSG00000197114ZGPAT9874.737ENSCGRG00000014321Zgpat10071.790Cricetulus_griseus_crigri
ENSG00000197114ZGPAT10048.529ENSCSEG00000002301zgpat10049.341Cynoglossus_semilaevis
ENSG00000197114ZGPAT10052.363ENSCVAG00000007255zgpat10053.131Cyprinodon_variegatus
ENSG00000197114ZGPAT10049.529ENSDARG00000027403zgpat10049.905Danio_rerio
ENSG00000197114ZGPAT10079.457ENSDNOG00000025874-10078.876Dasypus_novemcinctus
ENSG00000197114ZGPAT9577.732ENSDORG00000001360Zgpat10077.347Dipodomys_ordii
ENSG00000197114ZGPAT9340.038ENSEBUG00000009006ZGPAT9939.847Eptatretus_burgeri
ENSG00000197114ZGPAT10071.374ENSEASG00005023159-10071.947Equus_asinus_asinus
ENSG00000197114ZGPAT10074.659ENSECAG00000019674-10074.464Equus_caballus
ENSG00000197114ZGPAT10050.560ENSELUG00000003733zgpat10049.067Esox_lucius
ENSG00000197114ZGPAT10078.447ENSFCAG00000001173-10077.670Felis_catus
ENSG00000197114ZGPAT10062.681ENSFALG00000005924-10064.457Ficedula_albicollis
ENSG00000197114ZGPAT10080.000ENSFDAG00000002974ZGPAT10079.806Fukomys_damarensis
ENSG00000197114ZGPAT10051.296ENSFHEG00000009966zgpat10053.383Fundulus_heteroclitus
ENSG00000197114ZGPAT10063.291ENSGALG00000006092-10061.939Gallus_gallus
ENSG00000197114ZGPAT10049.907ENSGAFG00000020149zgpat10050.657Gambusia_affinis
ENSG00000197114ZGPAT10051.119ENSGACG00000004662zgpat10050.375Gasterosteus_aculeatus
ENSG00000197114ZGPAT10063.755ENSGAGG00000019510-9962.319Gopherus_agassizii
ENSG00000197114ZGPAT10099.247ENSGGOG00000004801ZGPAT10099.247Gorilla_gorilla
ENSG00000197114ZGPAT10051.128ENSHBUG00000010362zgpat10052.897Haplochromis_burtoni
ENSG00000197114ZGPAT10077.863ENSHGLG00000014870ZGPAT10077.863Heterocephalus_glaber_female
ENSG00000197114ZGPAT10080.312ENSHGLG00100003927ZGPAT10080.312Heterocephalus_glaber_male
ENSG00000197114ZGPAT10051.631ENSHCOG00000004674zgpat10052.023Hippocampus_comes
ENSG00000197114ZGPAT10049.060ENSIPUG00000012890zgpat10049.719Ictalurus_punctatus
ENSG00000197114ZGPAT9577.710ENSSTOG00000011986ZGPAT10077.710Ictidomys_tridecemlineatus
ENSG00000197114ZGPAT9776.596ENSJJAG00000008007-10072.957Jaculus_jaculus
ENSG00000197114ZGPAT10080.934ENSJJAG00000018714-10080.739Jaculus_jaculus
ENSG00000197114ZGPAT10051.210ENSKMAG00000006523zgpat10051.402Kryptolebias_marmoratus
ENSG00000197114ZGPAT10050.844ENSLBEG00000016259zgpat10051.589Labrus_bergylta
ENSG00000197114ZGPAT10056.204ENSLACG00000002661zgpat10057.328Latimeria_chalumnae
ENSG00000197114ZGPAT10056.629ENSLOCG00000001659zgpat10056.818Lepisosteus_oculatus
ENSG00000197114ZGPAT10097.652ENSMFAG00000001467ZGPAT10097.652Macaca_fascicularis
ENSG00000197114ZGPAT10097.456ENSMMUG00000000171ZGPAT10097.456Macaca_mulatta
ENSG00000197114ZGPAT10097.456ENSMNEG00000019568ZGPAT10097.456Macaca_nemestrina
ENSG00000197114ZGPAT10097.847ENSMLEG00000035416ZGPAT10097.847Mandrillus_leucophaeus
ENSG00000197114ZGPAT10051.210ENSMAMG00000008266zgpat10050.652Mastacembelus_armatus
ENSG00000197114ZGPAT10052.841ENSMZEG00005021620zgpat10052.642Maylandia_zebra
ENSG00000197114ZGPAT10063.196ENSMGAG00000006823-10060.946Meleagris_gallopavo
ENSG00000197114ZGPAT10079.142ENSMAUG00000017248Zgpat10080.117Mesocricetus_auratus
ENSG00000197114ZGPAT10086.240ENSMICG00000033269ZGPAT10086.047Microcebus_murinus
ENSG00000197114ZGPAT10078.988ENSMOCG00000001324Zgpat10079.767Microtus_ochrogaster
ENSG00000197114ZGPAT10051.248ENSMMOG00000014951zgpat10051.577Mola_mola
ENSG00000197114ZGPAT9267.223ENSMODG00000017016-8867.015Monodelphis_domestica
ENSG00000197114ZGPAT10049.231ENSMALG00000006584zgpat10048.399Monopterus_albus
ENSG00000197114ZGPAT10079.264MGP_CAROLIEiJ_G0024806Zgpat10079.845Mus_caroli
ENSG00000197114ZGPAT10079.727ENSMUSG00000027582Zgpat10079.922Mus_musculus
ENSG00000197114ZGPAT10079.029MGP_PahariEiJ_G0026254Zgpat10079.612Mus_pahari
ENSG00000197114ZGPAT10080.078MGP_SPRETEiJ_G0025732Zgpat10080.078Mus_spretus
ENSG00000197114ZGPAT10077.079ENSMLUG00000005264-10076.895Myotis_lucifugus
ENSG00000197114ZGPAT10051.887ENSNBRG00000021521zgpat10052.247Neolamprologus_brichardi
ENSG00000197114ZGPAT9996.875ENSNLEG00000010146ZGPAT10094.727Nomascus_leucogenys
ENSG00000197114ZGPAT9563.043ENSMEUG00000011946-10058.036Notamacropus_eugenii
ENSG00000197114ZGPAT6273.375ENSOPRG00000002115-10074.613Ochotona_princeps
ENSG00000197114ZGPAT10081.287ENSODEG00000006562ZGPAT10080.897Octodon_degus
ENSG00000197114ZGPAT10051.673ENSONIG00000009365zgpat10052.593Oreochromis_niloticus
ENSG00000197114ZGPAT10069.011ENSOANG00000004932-10069.434Ornithorhynchus_anatinus
ENSG00000197114ZGPAT6476.106ENSOCUG00000008687-10076.991Oryctolagus_cuniculus
ENSG00000197114ZGPAT10051.894ENSORLG00000000880zgpat10052.919Oryzias_latipes
ENSG00000197114ZGPAT10052.083ENSORLG00020004339zgpat10053.107Oryzias_latipes_hni
ENSG00000197114ZGPAT10051.894ENSORLG00015018532zgpat10052.919Oryzias_latipes_hsok
ENSG00000197114ZGPAT10054.771ENSOMEG00000014655zgpat10052.256Oryzias_melastigma
ENSG00000197114ZGPAT10081.346ENSOGAG00000034509ZGPAT10080.577Otolemur_garnettii
ENSG00000197114ZGPAT9878.947ENSOARG00000010128ZGPAT10073.675Ovis_aries
ENSG00000197114ZGPAT10099.435ENSPPAG00000027831ZGPAT10099.435Pan_paniscus
ENSG00000197114ZGPAT10078.835ENSPPRG00000024151-10077.670Panthera_pardus
ENSG00000197114ZGPAT10078.835ENSPTIG00000020325-10077.670Panthera_tigris_altaica
ENSG00000197114ZGPAT10099.435ENSPTRG00000013750ZGPAT10099.435Pan_troglodytes
ENSG00000197114ZGPAT10094.915ENSPANG00000005904ZGPAT10094.915Papio_anubis
ENSG00000197114ZGPAT10052.214ENSPKIG00000012056zgpat10053.061Paramormyrops_kingsleyae
ENSG00000197114ZGPAT10063.720ENSPSIG00000015801-10063.129Pelodiscus_sinensis
ENSG00000197114ZGPAT10051.803ENSPMGG00000014856zgpat10051.423Periophthalmus_magnuspinnatus
ENSG00000197114ZGPAT10080.312ENSPEMG00000015676Zgpat10080.312Peromyscus_maniculatus_bairdii
ENSG00000197114ZGPAT10067.816ENSPCIG00000017922-10067.625Phascolarctos_cinereus
ENSG00000197114ZGPAT10052.174ENSPFOG00000010326zgpat10053.612Poecilia_formosa
ENSG00000197114ZGPAT10052.273ENSPLAG00000002135zgpat10053.802Poecilia_latipinna
ENSG00000197114ZGPAT10051.789ENSPMEG00000019064zgpat10053.612Poecilia_mexicana
ENSG00000197114ZGPAT10051.515ENSPREG00000010919zgpat10052.652Poecilia_reticulata
ENSG00000197114ZGPAT10097.847ENSPPYG00000011246ZGPAT10097.847Pongo_abelii
ENSG00000197114ZGPAT7071.154ENSPCAG00000001883-9972.055Procavia_capensis
ENSG00000197114ZGPAT10086.127ENSPCOG00000012369ZGPAT10086.127Propithecus_coquereli
ENSG00000197114ZGPAT10073.981ENSPVAG00000013489-10074.175Pteropus_vampyrus
ENSG00000197114ZGPAT10052.601ENSPNYG00000013216zgpat10052.975Pundamilia_nyererei
ENSG00000197114ZGPAT10048.204ENSPNAG00000012769zgpat10048.771Pygocentrus_nattereri
ENSG00000197114ZGPAT10078.752ENSRNOG00000014235Zgpat10078.752Rattus_norvegicus
ENSG00000197114ZGPAT10097.260ENSRBIG00000034134ZGPAT10097.260Rhinopithecus_bieti
ENSG00000197114ZGPAT10097.652ENSRROG00000039084ZGPAT10097.652Rhinopithecus_roxellana
ENSG00000197114ZGPAT10091.211ENSSBOG00000028752ZGPAT10091.211Saimiri_boliviensis_boliviensis
ENSG00000197114ZGPAT10066.667ENSSHAG00000017828-10066.475Sarcophilus_harrisii
ENSG00000197114ZGPAT10050.730ENSSFOG00015000739zgpat10050.275Scleropages_formosus
ENSG00000197114ZGPAT10049.907ENSSMAG00000006646zgpat10050.466Scophthalmus_maximus
ENSG00000197114ZGPAT10050.093ENSSDUG00000014684zgpat10050.369Seriola_dumerili
ENSG00000197114ZGPAT10049.630ENSSLDG00000019446zgpat10051.124Seriola_lalandi_dorsalis
ENSG00000197114ZGPAT10062.523ENSSPUG00000018516-10062.976Sphenodon_punctatus
ENSG00000197114ZGPAT10052.319ENSSPAG00000022473zgpat10052.799Stegastes_partitus
ENSG00000197114ZGPAT10078.641ENSSSCG00000036595-10078.641Sus_scrofa
ENSG00000197114ZGPAT10067.495ENSTGUG00000007115-10067.304Taeniopygia_guttata
ENSG00000197114ZGPAT10052.150ENSTRUG00000010488zgpat10051.407Takifugu_rubripes
ENSG00000197114ZGPAT10051.679ENSTNIG00000004165zgpat10050.933Tetraodon_nigroviridis
ENSG00000197114ZGPAT9883.158ENSTTRG00000012223-7179.564Tursiops_truncatus
ENSG00000197114ZGPAT10080.388ENSUAMG00000009298-10079.417Ursus_americanus
ENSG00000197114ZGPAT10080.702ENSUMAG00000022033-10080.312Ursus_maritimus
ENSG00000197114ZGPAT10075.146ENSVVUG00000015014-10074.854Vulpes_vulpes
ENSG00000197114ZGPAT10053.220ENSXMAG00000004759zgpat10053.220Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000122negative regulation of transcription by RNA polymerase II19644445.IDAProcess
GO:0000978RNA polymerase II proximal promoter sequence-specific DNA binding19644445.IDAFunction
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific-ISAFunction
GO:0001227DNA-binding transcription repressor activity, RNA polymerase II-specific19644445.IDAFunction
GO:0003700DNA-binding transcription factor activity21873635.IBAFunction
GO:0003700DNA-binding transcription factor activity19644445.IDAFunction
GO:0005515protein binding19644445.21516116.25416956.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus19644445.IDAComponent
GO:0005886plasma membrane-IDAComponent
GO:0007175negative regulation of epidermal growth factor-activated receptor activity19644445.IDAProcess
GO:0043565sequence-specific DNA binding19644445.IDAFunction
GO:0045892negative regulation of transcription, DNA-templated21873635.IBAProcess
GO:0045892negative regulation of transcription, DNA-templated19644445.IDAProcess
GO:0046872metal ion binding-IEAFunction

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