EuRBPDB

Description

Ensembl ID: ENSG00000197226 (Gene tree)
Gene ID: 23061
Gene Symbol: TBC1D9B
Alias: KIAA0676|GRAMD9B
Full Name: TBC1 domain family member 9B
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 45,794 bases
Position: chr5:179,862,066-179,907,859
Accession: 29097
RBP type: non-canonical RBP
Summary: (TBC1 Domain Family Member 9B) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include calcium ion binding and GTPase activator activity. An important paralog of this gene is TBC1D9.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000522224	TBC1D9B-216	532	-	ENSP00000429361	100 (aa)	-	E5RIN2
ENST00000521669	TBC1D9B-213	592	-	-	- (aa)	-	-
ENST00000522029	TBC1D9B-214	616	-	-	- (aa)	-	-
ENST00000355235	TBC1D9B-201	5119	-	ENSP00000347375	1233 (aa)	-	Q66K14
ENST00000524222	TBC1D9B-219	927	-	ENSP00000428724	65 (aa)	-	H0YB58
ENST00000519757	TBC1D9B-209	1208	-	-	- (aa)	-	-
ENST00000522921	TBC1D9B-218	557	-	-	- (aa)	-	-
ENST00000522472	TBC1D9B-217	668	-	ENSP00000428441	166 (aa)	-	H0YB08
ENST00000356834	TBC1D9B-202	5173	-	ENSP00000349291	1250 (aa)	-	Q66K14
ENST00000630103	TBC1D9B-220	303	-	ENSP00000486765	100 (aa)	-	E5RIN2
ENST00000517782	TBC1D9B-203	283	-	-	- (aa)	-	-
ENST00000520794	TBC1D9B-210	2958	-	-	- (aa)	-	-
ENST00000522180	TBC1D9B-215	562	-	-	- (aa)	-	-
ENST00000521469	TBC1D9B-212	2741	-	-	- (aa)	-	-
ENST00000519746	TBC1D9B-208	2755	-	ENSP00000430293	409 (aa)	-	G3V133
ENST00000518085	TBC1D9B-204	3838	-	-	- (aa)	-	-
ENST00000518115	TBC1D9B-205	548	-	-	- (aa)	-	-
ENST00000518459	TBC1D9B-207	954	-	-	- (aa)	-	-
ENST00000518120	TBC1D9B-206	446	-	-	- (aa)	-	-
ENST00000520912	TBC1D9B-211	1931	-	-	- (aa)	-	-

Gene Model

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000197226	rs248252	5	179871342	C	Highest math class taken (MTAG)	30038396	[0.0061-0.0127] unit decrease	0.0094	EFO_0004875

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005096	GTPase activator activity	21873635.	IBA	Function
GO:0005509	calcium ion binding	-	IEA	Function
GO:0005515	protein binding	22354992.	IPI	Function
GO:0005623	cell	-	IEA	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0016021	integral component of membrane	-	IEA	Component
GO:0017137	Rab GTPase binding	21873635.	IBA	Function
GO:0090630	activation of GTPase activity	21873635.	IBA	Process
GO:1902017	regulation of cilium assembly	17646400.	IMP	Process