EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000197498 (Gene tree)
Gene ID
84154
Gene Symbol
RPF2
Alias
FLJ21087|bA397G5.4|BXDC1
Full Name
ribosome production factor 2 homolog
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
46,249 bases
Position
chr6:110,982,015-111,028,263
Accession
20870
RBP type
canonical RBP
Summary
(Ribosome Production Factor 2 Homolog) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include rRNA binding.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000414026BrixPF04427.185.7e-4511
ENSP00000402338BrixPF04427.181.2e-4411
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
30320233Targeted cleavage of nad6 mRNA induced by a modified pentatricopeptide repeat protein in plant mitochondria.Commun Biol2018 Oct 11Colas des Francs-Small Cdoi: 10.1038/s42003-018-0166-8
26159998Chaperoning 5S RNA assembly.Genes Dev2015 Jul 1Madru Cdoi: 10.1101/gad.260349.115.
11864606The sigma(70)-like motif: a eukaryotic RNA binding domain unique to a superfamily of proteins required for ribosome biogenesis.Mol Cell2002 FebWehner KA-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000441448RPF2-2031531-ENSP00000402338306 (aa)-Q9H7B2
ENST00000425871RPF2-202906-ENSP00000414026214 (aa)-Q5VXN0
ENST00000607388RPF2-2043621-ENSP0000047608159 (aa)-U3KQN5
ENST00000368864RPF2-201873-ENSP0000035785776 (aa)-Q5VXM9
Gene Model
Click here to download ENSG00000197498's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000197498's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000197498RPF29877.990ENSAPOG00000005714rpf29975.410Acanthochromis_polyacanthus
ENSG00000197498RPF210097.664ENSAMEG00000015753RPF210095.752Ailuropoda_melanoleuca
ENSG00000197498RPF25471.341ENSACIG00000006659rpf29871.341Amphilophus_citrinellus
ENSG00000197498RPF29877.033ENSAOCG00000005173rpf29974.754Amphiprion_ocellaris
ENSG00000197498RPF29877.033ENSAPEG00000004003rpf29974.754Amphiprion_percula
ENSG00000197498RPF210077.103ENSATEG00000012818rpf29973.026Anabas_testudineus
ENSG00000197498RPF29786.473ENSAPLG00000008812RPF210087.179Anas_platyrhynchos
ENSG00000197498RPF29783.092ENSACAG00000011270RPF29782.060Anolis_carolinensis
ENSG00000197498RPF29979.812ENSANAG00000025459-9775.490Aotus_nancymaae
ENSG00000197498RPF210089.869ENSANAG00000034834-10089.869Aotus_nancymaae
ENSG00000197498RPF210074.766ENSANAG00000021067-9873.597Aotus_nancymaae
ENSG00000197498RPF210094.118ENSANAG00000026549-10094.118Aotus_nancymaae
ENSG00000197498RPF210078.972ENSANAG00000033736-10079.412Aotus_nancymaae
ENSG00000197498RPF29674.272ENSAMXG00000035201rpf29673.559Astyanax_mexicanus
ENSG00000197498RPF210097.664ENSBTAG00000016584RPF210096.405Bos_taurus
ENSG00000197498RPF29941.589WBGene00021830Y54E10A.109643.310Caenorhabditis_elegans
ENSG00000197498RPF210098.598ENSCJAG00000038330RPF210098.366Callithrix_jacchus
ENSG00000197498RPF210095.752ENSCAFG00000003918RPF210095.752Canis_familiaris
ENSG00000197498RPF210091.503ENSCHIG00000022499RPF210091.503Capra_hircus
ENSG00000197498RPF210093.137ENSTSYG00000013924RPF210093.137Carlito_syrichta
ENSG00000197498RPF210074.510ENSCAPG00000014257RPF210073.856Cavia_aperea
ENSG00000197498RPF210097.196ENSCPOG00000006797RPF210095.752Cavia_porcellus
ENSG00000197498RPF210099.065ENSCCAG00000030864-10098.366Cebus_capucinus
ENSG00000197498RPF210074.299ENSCCAG00000028553-9774.419Cebus_capucinus
ENSG00000197498RPF210084.112ENSCCAG00000028906-9683.843Cebus_capucinus
ENSG00000197498RPF210097.196ENSCCAG00000030365-10096.405Cebus_capucinus
ENSG00000197498RPF210081.356ENSCATG00000029725-9890.698Cercocebus_atys
ENSG00000197498RPF28898.077ENSCATG00000034352-10078.431Cercocebus_atys
ENSG00000197498RPF210097.196ENSCLAG00000010393-10095.752Chinchilla_lanigera
ENSG00000197498RPF29764.423ENSCLAG00000013252-10069.231Chinchilla_lanigera
ENSG00000197498RPF210078.995ENSCLAG00000010874-10076.898Chinchilla_lanigera
ENSG00000197498RPF210089.720ENSCHOG00000005865RPF29989.216Choloepus_hoffmanni
ENSG00000197498RPF29787.440ENSCPBG00000006504RPF29787.205Chrysemys_picta_bellii
ENSG00000197498RPF210062.150ENSCING00000008090-9857.947Ciona_intestinalis
ENSG00000197498RPF29562.255ENSCSAVG00000010672-9759.233Ciona_savignyi
ENSG00000197498RPF210099.065ENSCANG00000030665RPF210097.712Colobus_angolensis_palliatus
ENSG00000197498RPF210095.327ENSCGRG00001007331-10092.484Cricetulus_griseus_chok1gshd
ENSG00000197498RPF29974.834ENSCGRG00001005262-9774.834Cricetulus_griseus_chok1gshd
ENSG00000197498RPF210095.327ENSCGRG00000006083Rpf29793.289Cricetulus_griseus_crigri
ENSG00000197498RPF29675.728ENSCSEG00000015725rpf29773.898Cynoglossus_semilaevis
ENSG00000197498RPF210077.103ENSCVAG00000001072rpf29973.684Cyprinodon_variegatus
ENSG00000197498RPF29874.641ENSDARG00000043960rpf29971.711Danio_rerio
ENSG00000197498RPF26693.564ENSDNOG00000039270RPF29893.564Dasypus_novemcinctus
ENSG00000197498RPF28890.385ENSDORG00000026915Rpf210094.624Dipodomys_ordii
ENSG00000197498RPF210048.372FBgn0038585Non39347.315Drosophila_melanogaster
ENSG00000197498RPF29958.216ENSEBUG00000003640rpf29354.902Eptatretus_burgeri
ENSG00000197498RPF25087.582ENSEASG00005002363-9987.582Equus_asinus_asinus
ENSG00000197498RPF29792.593ENSEASG00005006927-10091.830Equus_asinus_asinus
ENSG00000197498RPF210097.664ENSECAG00000017121RPF210096.405Equus_caballus
ENSG00000197498RPF29777.181ENSEEUG00000006169RPF210077.181Erinaceus_europaeus
ENSG00000197498RPF29576.961ENSELUG00000018518rpf29475.958Esox_lucius
ENSG00000197498RPF210096.262ENSFCAG00000001527RPF210095.752Felis_catus
ENSG00000197498RPF29787.923ENSFALG00000010816RPF29688.475Ficedula_albicollis
ENSG00000197498RPF210096.262ENSFDAG00000005811-10095.425Fukomys_damarensis
ENSG00000197498RPF29673.786ENSFDAG00000016721-10076.296Fukomys_damarensis
ENSG00000197498RPF29877.512ENSFHEG00000011243rpf29974.754Fundulus_heteroclitus
ENSG00000197498RPF210061.215ENSGMOG00000002521rpf29862.116Gadus_morhua
ENSG00000197498RPF29688.136ENSGALG00000037087RPF29688.136Gallus_gallus
ENSG00000197498RPF29876.077ENSGAFG00000009537rpf29974.013Gambusia_affinis
ENSG00000197498RPF210078.505ENSGACG00000006507rpf29973.770Gasterosteus_aculeatus
ENSG00000197498RPF29782.828ENSGAGG00000016221RPF29782.828Gopherus_agassizii
ENSG00000197498RPF29790.821ENSGGOG00000024187-10089.161Gorilla_gorilla
ENSG00000197498RPF28898.077ENSGGOG00000001469RPF210083.333Gorilla_gorilla
ENSG00000197498RPF29677.184ENSHBUG00000021805rpf29974.098Haplochromis_burtoni
ENSG00000197498RPF210094.771ENSHGLG00000001322RPF210094.771Heterocephalus_glaber_female
ENSG00000197498RPF29983.607ENSHGLG00000012500-8184.262Heterocephalus_glaber_female
ENSG00000197498RPF29789.372ENSHGLG00000012697-9987.063Heterocephalus_glaber_female
ENSG00000197498RPF28690.196ENSHGLG00100002981-10077.972Heterocephalus_glaber_male
ENSG00000197498RPF210094.771ENSHGLG00100012131RPF210094.771Heterocephalus_glaber_male
ENSG00000197498RPF29983.279ENSHGLG00100012473-9883.934Heterocephalus_glaber_male
ENSG00000197498RPF29789.372ENSHGLG00100000462-9987.063Heterocephalus_glaber_male
ENSG00000197498RPF29885.714ENSHGLG00100009310-9979.705Heterocephalus_glaber_male
ENSG00000197498RPF29678.155ENSHCOG00000000225rpf29973.597Hippocampus_comes
ENSG00000197498RPF29864.762ENSIPUG00000016288rpf29674.869Ictalurus_punctatus
ENSG00000197498RPF28888.462ENSSTOG00000013114RPF29975.082Ictidomys_tridecemlineatus
ENSG00000197498RPF29987.213ENSJJAG00000009092Rpf210095.312Jaculus_jaculus
ENSG00000197498RPF29678.155ENSKMAG00000014609rpf29676.190Kryptolebias_marmoratus
ENSG00000197498RPF210079.439ENSLBEG00000011907rpf29966.557Labrus_bergylta
ENSG00000197498RPF29876.547ENSLACG00000003942RPF29976.547Latimeria_chalumnae
ENSG00000197498RPF29877.465ENSLOCG00000016992rpf29477.931Lepisosteus_oculatus
ENSG00000197498RPF210097.196ENSLAFG00000018219RPF210096.091Loxodonta_africana
ENSG00000197498RPF210099.065ENSMFAG00000000417RPF210098.788Macaca_fascicularis
ENSG00000197498RPF28886.538ENSMFAG00000036119-9978.676Macaca_fascicularis
ENSG00000197498RPF29978.247ENSMMUG00000042376-10078.247Macaca_mulatta
ENSG00000197498RPF210099.065ENSMMUG00000021532RPF210099.065Macaca_mulatta
ENSG00000197498RPF28898.077ENSMNEG00000031683RPF210082.353Macaca_nemestrina
ENSG00000197498RPF29980.528ENSMLEG00000042472-10080.528Mandrillus_leucophaeus
ENSG00000197498RPF29971.803ENSMAMG00000004267rpf29971.803Mastacembelus_armatus
ENSG00000197498RPF29677.184ENSMZEG00005015632rpf29974.098Maylandia_zebra
ENSG00000197498RPF29786.957ENSMGAG00000013429RPF29687.797Meleagris_gallopavo
ENSG00000197498RPF27590.909ENSMAUG00000005049Rpf210094.531Mesocricetus_auratus
ENSG00000197498RPF29978.548ENSMICG00000028979-9978.548Microcebus_murinus
ENSG00000197498RPF210096.262ENSMICG00000032086-10095.758Microcebus_murinus
ENSG00000197498RPF29786.473ENSMICG00000038169-9985.574Microcebus_murinus
ENSG00000197498RPF210096.729ENSMOCG00000005634Rpf29794.649Microtus_ochrogaster
ENSG00000197498RPF29867.619ENSMMOG00000014844rpf29867.677Mola_mola
ENSG00000197498RPF29790.338ENSMODG00000017919RPF29889.562Monodelphis_domestica
ENSG00000197498RPF210076.168ENSMALG00000019046rpf29972.787Monopterus_albus
ENSG00000197498RPF210095.794MGP_CAROLIEiJ_G0015254Rpf210093.396Mus_caroli
ENSG00000197498RPF210094.860ENSMUSG00000038510Rpf210092.674Mus_musculus
ENSG00000197498RPF210095.794MGP_PahariEiJ_G0030671Rpf210093.773Mus_pahari
ENSG00000197498RPF210095.327MGP_SPRETEiJ_G0016063Rpf210092.453Mus_spretus
ENSG00000197498RPF210097.664ENSMPUG00000010183RPF28796.732Mustela_putorius_furo
ENSG00000197498RPF29198.974ENSMLUG00000005676RPF29998.031Myotis_lucifugus
ENSG00000197498RPF210096.729ENSNGAG00000009701Rpf210094.444Nannospalax_galili
ENSG00000197498RPF29973.770ENSNBRG00000011087rpf29973.770Neolamprologus_brichardi
ENSG00000197498RPF210098.598ENSNLEG00000027819RPF210098.366Nomascus_leucogenys
ENSG00000197498RPF29794.203ENSNLEG00000033597-9583.612Nomascus_leucogenys
ENSG00000197498RPF210095.327ENSNLEG00000011848-9595.633Nomascus_leucogenys
ENSG00000197498RPF29770.470ENSMEUG00000006421RPF210070.470Notamacropus_eugenii
ENSG00000197498RPF210083.333ENSODEG00000006584-10083.333Octodon_degus
ENSG00000197498RPF210090.523ENSODEG00000019144-10090.523Octodon_degus
ENSG00000197498RPF29680.583ENSODEG00000002442-9976.898Octodon_degus
ENSG00000197498RPF29675.122ENSODEG00000003531-10078.182Octodon_degus
ENSG00000197498RPF29778.261ENSODEG00000006939-10073.220Octodon_degus
ENSG00000197498RPF210097.664ENSODEG00000013529-9795.973Octodon_degus
ENSG00000197498RPF29973.443ENSONIG00000011383rpf29973.443Oreochromis_niloticus
ENSG00000197498RPF210096.729ENSOCUG00000016028RPF210095.752Oryctolagus_cuniculus
ENSG00000197498RPF29876.077ENSORLG00000015183rpf29972.459Oryzias_latipes
ENSG00000197498RPF29875.598ENSORLG00020008756rpf29670.370Oryzias_latipes_hni
ENSG00000197498RPF29876.077ENSORLG00015003841RPF29972.459Oryzias_latipes_hsok
ENSG00000197498RPF210073.529ENSOMEG00000011508rpf29973.529Oryzias_melastigma
ENSG00000197498RPF210096.262ENSOGAG00000007438RPF210096.078Otolemur_garnettii
ENSG00000197498RPF210097.664ENSOARG00000015548-10096.405Ovis_aries
ENSG00000197498RPF210097.664ENSOARG00000009886-10096.405Ovis_aries
ENSG00000197498RPF2100100.000ENSPPAG00000035622RPF2100100.000Pan_paniscus
ENSG00000197498RPF29792.754ENSPPAG00000032089-10085.479Pan_paniscus
ENSG00000197498RPF210096.729ENSPPRG00000000320-10096.078Panthera_pardus
ENSG00000197498RPF210082.243ENSPPRG00000008363-9781.293Panthera_pardus
ENSG00000197498RPF210096.729ENSPTIG00000002060RPF210096.078Panthera_tigris_altaica
ENSG00000197498RPF2100100.000ENSPTRG00000018503RPF2100100.000Pan_troglodytes
ENSG00000197498RPF210099.065ENSPANG00000018834RPF210098.693Papio_anubis
ENSG00000197498RPF210078.972ENSPKIG00000019506rpf29577.586Paramormyrops_kingsleyae
ENSG00000197498RPF29985.668ENSPSIG00000014887RPF210085.668Pelodiscus_sinensis
ENSG00000197498RPF210083.178ENSPEMG00000011413Rpf210084.452Peromyscus_maniculatus_bairdii
ENSG00000197498RPF29790.821ENSPCIG00000028172RPF29888.852Phascolarctos_cinereus
ENSG00000197498RPF29877.512ENSPFOG00000003396rpf29975.000Poecilia_formosa
ENSG00000197498RPF29876.555ENSPLAG00000001226rpf29974.342Poecilia_latipinna
ENSG00000197498RPF29877.512ENSPMEG00000007781rpf29975.000Poecilia_mexicana
ENSG00000197498RPF29677.184ENSPREG00000020525rpf29974.013Poecilia_reticulata
ENSG00000197498RPF210099.533ENSPPYG00000016925RPF210099.346Pongo_abelii
ENSG00000197498RPF29193.846ENSPCAG00000002562RPF27993.846Procavia_capensis
ENSG00000197498RPF29979.344ENSPCOG00000012785RPF29979.412Propithecus_coquereli
ENSG00000197498RPF29198.462ENSPVAG00000003446RPF28398.419Pteropus_vampyrus
ENSG00000197498RPF29873.206ENSPNAG00000000082rpf29573.720Pygocentrus_nattereri
ENSG00000197498RPF210095.794ENSRNOG00000000587Rpf210092.484Rattus_norvegicus
ENSG00000197498RPF210094.860ENSRBIG00000038389RPF210097.576Rhinopithecus_bieti
ENSG00000197498RPF28994.792ENSRROG00000028992-8485.714Rhinopithecus_roxellana
ENSG00000197498RPF29787.619ENSRROG00000039510-9987.407Rhinopithecus_roxellana
ENSG00000197498RPF210098.131ENSRROG00000036457RPF210097.059Rhinopithecus_roxellana
ENSG00000197498RPF210093.458ENSRROG00000036685-9294.167Rhinopithecus_roxellana
ENSG00000197498RPF210040.265YKR081C-8546.259Saccharomyces_cerevisiae
ENSG00000197498RPF29781.731ENSSBOG00000025434-9975.084Saimiri_boliviensis_boliviensis
ENSG00000197498RPF25091.558ENSSBOG00000003975-9891.558Saimiri_boliviensis_boliviensis
ENSG00000197498RPF210073.364ENSSBOG00000030264-8674.370Saimiri_boliviensis_boliviensis
ENSG00000197498RPF210072.222ENSSBOG00000034420-10069.608Saimiri_boliviensis_boliviensis
ENSG00000197498RPF29785.507ENSSBOG00000022486-9385.294Saimiri_boliviensis_boliviensis
ENSG00000197498RPF29088.679ENSSBOG00000029182-9274.583Saimiri_boliviensis_boliviensis
ENSG00000197498RPF29988.852ENSSHAG00000002212RPF29988.852Sarcophilus_harrisii
ENSG00000197498RPF29972.697ENSSFOG00015020916rpf29972.697Scleropages_formosus
ENSG00000197498RPF29876.555ENSSMAG00000017499rpf29376.655Scophthalmus_maximus
ENSG00000197498RPF29871.905ENSSDUG00000010383rpf29868.932Seriola_dumerili
ENSG00000197498RPF29877.143ENSSLDG00000022111rpf29973.443Seriola_lalandi_dorsalis
ENSG00000197498RPF28890.385ENSSARG00000012063RPF210069.608Sorex_araneus
ENSG00000197498RPF29980.000ENSSPUG00000005108RPF29980.000Sphenodon_punctatus
ENSG00000197498RPF29877.512ENSSPAG00000008035rpf29974.754Stegastes_partitus
ENSG00000197498RPF210096.729ENSSSCG00000004394RPF210096.078Sus_scrofa
ENSG00000197498RPF29787.440ENSTGUG00000012034RPF29688.136Taeniopygia_guttata
ENSG00000197498RPF29776.923ENSTRUG00000018264rpf29375.610Takifugu_rubripes
ENSG00000197498RPF29870.952ENSTNIG00000002749rpf29173.050Tetraodon_nigroviridis
ENSG00000197498RPF28888.298ENSTBEG00000017151RPF28390.157Tupaia_belangeri
ENSG00000197498RPF210096.729ENSTTRG00000012357RPF210095.425Tursiops_truncatus
ENSG00000197498RPF210097.664ENSUAMG00000013497RPF210097.059Ursus_americanus
ENSG00000197498RPF210097.664ENSUMAG00000025488RPF210096.732Ursus_maritimus
ENSG00000197498RPF210096.729ENSVPAG00000009562RPF210095.752Vicugna_pacos
ENSG00000197498RPF29780.676ENSVVUG00000021231-10084.452Vulpes_vulpes
ENSG00000197498RPF210087.582ENSVVUG00000006593-10087.582Vulpes_vulpes
ENSG00000197498RPF29881.429ENSXETG00000021335rpf210079.221Xenopus_tropicalis
ENSG00000197498RPF29773.077ENSXCOG00000001590rpf29971.053Xiphophorus_couchianus
ENSG00000197498RPF29966.776ENSXMAG00000021706rpf29966.776Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000027ribosomal large subunit assembly21873635.IBAProcess
GO:0000463maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)21873635.IBAProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005634nucleus-IDAComponent
GO:0005730nucleolus21873635.IBAComponent
GO:0005730nucleolus-IDAComponent
GO:00080975S rRNA binding24120868.IDAFunction
GO:0042273ribosomal large subunit biogenesis24120868.IMPProcess
GO:1901796regulation of signal transduction by p53 class mediator24120868.IMPProcess
GO:1902570protein localization to nucleolus24120868.IMPProcess

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