EuRBPDB

Description

Ensembl ID: ENSG00000198420 (Gene tree)
Gene ID: 9747
Gene Symbol: TCAF1
Alias: KIAA0738|FAM115A
Full Name: TRPM8 channel associated factor 1
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 50,831 bases
Position: chr7:143,851,368-143,902,198
Accession: 22201
RBP type: non-canonical RBP
Summary: (TRPM8 Channel Associated Factor 1) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include ion channel binding. An important paralog of this gene is TCAF2.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000479870	TCAF1-205	5733	XM_005250074	ENSP00000419235	921 (aa)	XP_005250131	Q9Y4C2
ENST00000491908	TCAF1-207	634	-	ENSP00000417600	150 (aa)	-	C9J9F4
ENST00000355951	TCAF1-201	3343	XM_006716192	ENSP00000348220	919 (aa)	XP_006716255	Q9Y4C2
ENST00000485416	TCAF1-206	577	-	ENSP00000418432	75 (aa)	-	C9J648
ENST00000478172	TCAF1-204	576	-	ENSP00000419622	145 (aa)	-	C9K0E7
ENST00000460532	TCAF1-203	840	-	ENSP00000420607	167 (aa)	-	C9JD13
ENST00000392900	TCAF1-202	2513	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	16189514.21516116.25416956.	IPI	Function
GO:0005886	plasma membrane	21873635.	IBA	Component
GO:0005886	plasma membrane	25559186.	IDA	Component
GO:0030336	negative regulation of cell migration	25559186.	IDA	Process
GO:0044325	ion channel binding	21873635.	IBA	Function
GO:0044325	ion channel binding	25559186.	IDA	Function
GO:0044325	ion channel binding	25559186.	IPI	Function
GO:0090314	positive regulation of protein targeting to membrane	21873635.	IBA	Process
GO:0090314	positive regulation of protein targeting to membrane	25559186.	IMP	Process
GO:1901529	positive regulation of anion channel activity	21873635.	IBA	Process
GO:1901529	positive regulation of anion channel activity	25559186.	IDA	Process