EuRBPDB

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  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000198498 (Gene tree)
Gene ID
55319
Gene Symbol
TMA16
Alias
FLJ11184|C4orf43
Full Name
translation machinery associated 16 homolog
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
26,251 bases
Position
chr4:163,494,289-163,520,539
Accession
25638
RBP type
non-canonical RBP
Summary
(Translation Machinery Associated 16 Homolog) is a Protein Coding gene.
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000513134TMA16-208747-ENSP00000423901101 (aa)-D6RC31
ENST00000508652TMA16-2051195--- (aa)--
ENST00000509657TMA16-206933-ENSP00000425347242 (aa)-H0Y9X1
ENST00000508268TMA16-204608-ENSP00000423375144 (aa)-D6RA57
ENST00000506214TMA16-203843--- (aa)--
ENST00000503148TMA16-202630--- (aa)--
ENST00000513272TMA16-209803-ENSP0000042693388 (aa)-D6RE67
ENST00000358572TMA16-2011978-ENSP00000351380203 (aa)-Q96EY4
ENST00000511562TMA16-207554--- (aa)--
Gene Model
Click here to download ENSG00000198498's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000198498rs93080624163517048TSmall cell lung carcinoma28604730[1.097465593-1.236843752]1.1650723EFO_0000702
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000198498's network
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000198498TMA1610079.861ENSMUSG00000025591Tma169872.685Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005515protein binding25416956.IPIFunction
GO:0005634nucleus21630459.HDAComponent
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-IDAComponent
GO:0005730nucleolus-IDAComponent

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