EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000198746 (Gene tree)
Gene ID: 63906
Gene Symbol: GPATCH3
Alias: FLJ12455|GPATC3
Full Name: G-patch domain containing 3
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 10,578 bases
Position: chr1:26,890,488-26,901,065
Accession: 25720
RBP type: canonical RBP
Summary: GPATCH3 (G-Patch Domain Containing 3) is a Protein Coding gene. Diseases associated with GPATCH3 include Corneal Edema. Gene Ontology (GO) annotations related to this gene include nucleic acid binding.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000399036	G-patch	PF01585.23	8.3e-08	1	1
ENSP00000354645	G-patch	PF01585.23	3.8e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000361720	GPATCH3-201	2123	-	ENSP00000354645	525 (aa)	-	Q96I76
ENST00000450844	GPATCH3-203	521	-	ENSP00000399036	128 (aa)	-	Q5JYG5
ENST00000445019	GPATCH3-202	546	-	ENSP00000398563	76 (aa)	-	H0Y5H5

Gene Model

Click here to download ENSG00000198746's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000198746's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000198746	GPATCH3	82	72.581	ENSAPOG00000001212	gpatch3	97	54.581	Acanthochromis_polyacanthus
ENSG00000198746	GPATCH3	100	92.188	ENSAMEG00000010801	GPATCH3	100	86.857	Ailuropoda_melanoleuca
ENSG00000198746	GPATCH3	82	74.194	ENSAOCG00000019352	gpatch3	97	53.786	Amphiprion_ocellaris
ENSG00000198746	GPATCH3	82	74.194	ENSAPEG00000018926	gpatch3	97	53.786	Amphiprion_percula
ENSG00000198746	GPATCH3	82	67.742	ENSATEG00000023759	gpatch3	97	53.216	Anabas_testudineus
ENSG00000198746	GPATCH3	86	83.077	ENSAPLG00000010745	GPATCH3	99	71.053	Anas_platyrhynchos
ENSG00000198746	GPATCH3	100	67.188	ENSACAG00000016709	GPATCH3	95	57.524	Anolis_carolinensis
ENSG00000198746	GPATCH3	100	94.531	ENSANAG00000035944	GPATCH3	100	93.217	Aotus_nancymaae
ENSG00000198746	GPATCH3	82	70.968	ENSACLG00000012807	gpatch3	97	52.682	Astatotilapia_calliptera
ENSG00000198746	GPATCH3	96	59.350	ENSAMXG00000034582	gpatch3	96	53.000	Astyanax_mexicanus
ENSG00000198746	GPATCH3	98	88.000	ENSBTAG00000014849	GPATCH3	100	83.429	Bos_taurus
ENSG00000198746	GPATCH3	94	34.340	WBGene00019467	K07B1.7	93	34.340	Caenorhabditis_elegans
ENSG00000198746	GPATCH3	100	95.312	ENSCJAG00000010000	GPATCH3	99	92.045	Callithrix_jacchus
ENSG00000198746	GPATCH3	100	92.969	ENSCAFG00000012265	GPATCH3	100	88.000	Canis_familiaris
ENSG00000198746	GPATCH3	100	92.969	ENSCAFG00020021640	GPATCH3	100	88.000	Canis_lupus_dingo
ENSG00000198746	GPATCH3	100	89.062	ENSCHIG00000024245	GPATCH3	98	83.810	Capra_hircus
ENSG00000198746	GPATCH3	100	94.531	ENSTSYG00000011753	GPATCH3	100	90.095	Carlito_syrichta
ENSG00000198746	GPATCH3	100	92.969	ENSCAPG00000007313	GPATCH3	99	83.784	Cavia_aperea
ENSG00000198746	GPATCH3	100	92.969	ENSCPOG00000010404	GPATCH3	99	85.249	Cavia_porcellus
ENSG00000198746	GPATCH3	100	91.406	ENSCCAG00000030482	GPATCH3	100	91.667	Cebus_capucinus
ENSG00000198746	GPATCH3	100	98.438	ENSCATG00000033598	GPATCH3	100	92.190	Cercocebus_atys
ENSG00000198746	GPATCH3	100	92.188	ENSCLAG00000012064	GPATCH3	100	84.571	Chinchilla_lanigera
ENSG00000198746	GPATCH3	100	71.094	ENSCPBG00000024968	GPATCH3	99	63.208	Chrysemys_picta_bellii
ENSG00000198746	GPATCH3	100	96.094	ENSCANG00000036795	GPATCH3	100	95.619	Colobus_angolensis_palliatus
ENSG00000198746	GPATCH3	100	90.625	ENSCGRG00001002930	Gpatch3	100	82.476	Cricetulus_griseus_chok1gshd
ENSG00000198746	GPATCH3	100	90.625	ENSCGRG00000004699	Gpatch3	100	82.476	Cricetulus_griseus_crigri
ENSG00000198746	GPATCH3	82	72.581	ENSCSEG00000005277	gpatch3	96	55.403	Cynoglossus_semilaevis
ENSG00000198746	GPATCH3	82	72.581	ENSCVAG00000000827	gpatch3	97	53.565	Cyprinodon_variegatus
ENSG00000198746	GPATCH3	96	65.164	ENSDARG00000052747	gpatch3	67	68.720	Danio_rerio
ENSG00000198746	GPATCH3	100	92.188	ENSDNOG00000016999	GPATCH3	100	86.095	Dasypus_novemcinctus
ENSG00000198746	GPATCH3	95	51.613	ENSEBUG00000013911	gpatch3	93	43.396	Eptatretus_burgeri
ENSG00000198746	GPATCH3	100	92.188	ENSEASG00005008636	GPATCH3	100	88.952	Equus_asinus_asinus
ENSG00000198746	GPATCH3	100	92.188	ENSECAG00000007653	GPATCH3	100	88.952	Equus_caballus
ENSG00000198746	GPATCH3	96	56.800	ENSELUG00000000963	gpatch3	97	54.224	Esox_lucius
ENSG00000198746	GPATCH3	100	91.406	ENSFCAG00000012819	GPATCH3	99	87.165	Felis_catus
ENSG00000198746	GPATCH3	100	67.969	ENSFALG00000000319	GPATCH3	95	68.696	Ficedula_albicollis
ENSG00000198746	GPATCH3	100	90.625	ENSFDAG00000016270	GPATCH3	100	84.000	Fukomys_damarensis
ENSG00000198746	GPATCH3	96	58.537	ENSFHEG00000015264	gpatch3	97	55.212	Fundulus_heteroclitus
ENSG00000198746	GPATCH3	96	56.098	ENSGMOG00000000991	gpatch3	97	54.510	Gadus_morhua
ENSG00000198746	GPATCH3	100	66.406	ENSGALG00000000881	GPATCH3	95	62.327	Gallus_gallus
ENSG00000198746	GPATCH3	82	72.581	ENSGAFG00000002531	gpatch3	95	59.544	Gambusia_affinis
ENSG00000198746	GPATCH3	82	70.968	ENSGACG00000007199	gpatch3	97	54.651	Gasterosteus_aculeatus
ENSG00000198746	GPATCH3	100	71.094	ENSGAGG00000023286	GPATCH3	99	64.394	Gopherus_agassizii
ENSG00000198746	GPATCH3	100	99.219	ENSGGOG00000015305	GPATCH3	100	98.857	Gorilla_gorilla
ENSG00000198746	GPATCH3	82	70.968	ENSHBUG00000020513	gpatch3	94	59.599	Haplochromis_burtoni
ENSG00000198746	GPATCH3	100	93.750	ENSHGLG00000012492	GPATCH3	99	84.971	Heterocephalus_glaber_female
ENSG00000198746	GPATCH3	100	93.750	ENSHGLG00100016909	GPATCH3	99	84.971	Heterocephalus_glaber_male
ENSG00000198746	GPATCH3	82	75.806	ENSHCOG00000005739	gpatch3	96	56.262	Hippocampus_comes
ENSG00000198746	GPATCH3	95	57.851	ENSIPUG00000007697	gpatch3	99	63.376	Ictalurus_punctatus
ENSG00000198746	GPATCH3	100	92.188	ENSSTOG00000015220	GPATCH3	99	86.832	Ictidomys_tridecemlineatus
ENSG00000198746	GPATCH3	100	89.844	ENSJJAG00000003292	Gpatch3	99	82.824	Jaculus_jaculus
ENSG00000198746	GPATCH3	82	70.968	ENSKMAG00000020717	gpatch3	97	55.278	Kryptolebias_marmoratus
ENSG00000198746	GPATCH3	96	55.285	ENSLBEG00000007046	gpatch3	95	53.033	Labrus_bergylta
ENSG00000198746	GPATCH3	100	64.844	ENSLACG00000011400	GPATCH3	70	74.771	Latimeria_chalumnae
ENSG00000198746	GPATCH3	96	59.350	ENSLOCG00000003858	gpatch3	97	54.951	Lepisosteus_oculatus
ENSG00000198746	GPATCH3	100	92.969	ENSLAFG00000016691	GPATCH3	100	87.023	Loxodonta_africana
ENSG00000198746	GPATCH3	100	98.438	ENSMFAG00000030918	GPATCH3	100	96.762	Macaca_fascicularis
ENSG00000198746	GPATCH3	100	99.219	ENSMMUG00000018723	GPATCH3	100	96.952	Macaca_mulatta
ENSG00000198746	GPATCH3	86	96.923	ENSMNEG00000033889	GPATCH3	94	85.275	Macaca_nemestrina
ENSG00000198746	GPATCH3	100	98.438	ENSMLEG00000033364	GPATCH3	100	96.571	Mandrillus_leucophaeus
ENSG00000198746	GPATCH3	82	74.194	ENSMAMG00000023975	gpatch3	97	56.055	Mastacembelus_armatus
ENSG00000198746	GPATCH3	82	70.968	ENSMZEG00005019731	gpatch3	97	52.682	Maylandia_zebra
ENSG00000198746	GPATCH3	100	66.406	ENSMGAG00000000813	GPATCH3	96	69.801	Meleagris_gallopavo
ENSG00000198746	GPATCH3	100	89.844	ENSMAUG00000002005	Gpatch3	100	83.902	Mesocricetus_auratus
ENSG00000198746	GPATCH3	100	92.969	ENSMICG00000015656	GPATCH3	100	90.286	Microcebus_murinus
ENSG00000198746	GPATCH3	100	91.406	ENSMOCG00000022375	Gpatch3	100	83.650	Microtus_ochrogaster
ENSG00000198746	GPATCH3	96	53.659	ENSMMOG00000008963	gpatch3	93	63.142	Mola_mola
ENSG00000198746	GPATCH3	100	82.812	ENSMODG00000014417	GPATCH3	98	73.070	Monodelphis_domestica
ENSG00000198746	GPATCH3	82	72.581	ENSMALG00000007586	gpatch3	97	53.816	Monopterus_albus
ENSG00000198746	GPATCH3	100	90.625	MGP_CAROLIEiJ_G0026594	Gpatch3	100	84.571	Mus_caroli
ENSG00000198746	GPATCH3	100	90.625	ENSMUSG00000028850	Gpatch3	99	84.674	Mus_musculus
ENSG00000198746	GPATCH3	100	89.844	MGP_PahariEiJ_G0028927	Gpatch3	100	83.619	Mus_pahari
ENSG00000198746	GPATCH3	100	90.625	MGP_SPRETEiJ_G0027575	Gpatch3	99	90.149	Mus_spretus
ENSG00000198746	GPATCH3	100	92.188	ENSMPUG00000015665	GPATCH3	100	86.667	Mustela_putorius_furo
ENSG00000198746	GPATCH3	100	91.406	ENSMLUG00000023528	GPATCH3	100	86.476	Myotis_lucifugus
ENSG00000198746	GPATCH3	100	93.750	ENSNGAG00000006821	Gpatch3	98	85.687	Nannospalax_galili
ENSG00000198746	GPATCH3	82	72.581	ENSNBRG00000000365	gpatch3	97	51.491	Neolamprologus_brichardi
ENSG00000198746	GPATCH3	100	96.094	ENSNLEG00000009387	GPATCH3	100	92.337	Nomascus_leucogenys
ENSG00000198746	GPATCH3	100	83.594	ENSMEUG00000003236	GPATCH3	99	74.151	Notamacropus_eugenii
ENSG00000198746	GPATCH3	100	92.188	ENSOPRG00000016429	GPATCH3	100	84.000	Ochotona_princeps
ENSG00000198746	GPATCH3	100	91.406	ENSODEG00000003292	GPATCH3	100	83.460	Octodon_degus
ENSG00000198746	GPATCH3	82	72.581	ENSONIG00000006771	gpatch3	97	55.361	Oreochromis_niloticus
ENSG00000198746	GPATCH3	86	87.692	ENSOCUG00000006411	GPATCH3	100	81.895	Oryctolagus_cuniculus
ENSG00000198746	GPATCH3	96	55.285	ENSORLG00000004435	gpatch3	96	53.398	Oryzias_latipes
ENSG00000198746	GPATCH3	82	69.355	ENSORLG00020022609	gpatch3	97	53.801	Oryzias_latipes_hni
ENSG00000198746	GPATCH3	96	56.098	ENSORLG00015008692	gpatch3	92	61.199	Oryzias_latipes_hsok
ENSG00000198746	GPATCH3	82	69.355	ENSOMEG00000010991	gpatch3	97	54.224	Oryzias_melastigma
ENSG00000198746	GPATCH3	100	92.188	ENSOGAG00000011647	GPATCH3	100	88.868	Otolemur_garnettii
ENSG00000198746	GPATCH3	100	87.500	ENSOARG00000003955	GPATCH3	98	83.619	Ovis_aries
ENSG00000198746	GPATCH3	100	100.000	ENSPPAG00000032902	GPATCH3	100	99.238	Pan_paniscus
ENSG00000198746	GPATCH3	100	91.406	ENSPPRG00000024244	GPATCH3	99	87.739	Panthera_pardus
ENSG00000198746	GPATCH3	100	92.188	ENSPTIG00000014693	GPATCH3	99	86.957	Panthera_tigris_altaica
ENSG00000198746	GPATCH3	100	100.000	ENSPTRG00000023419	GPATCH3	100	99.619	Pan_troglodytes
ENSG00000198746	GPATCH3	100	98.438	ENSPANG00000007984	GPATCH3	100	96.381	Papio_anubis
ENSG00000198746	GPATCH3	96	56.098	ENSPKIG00000020073	gpatch3	96	54.864	Paramormyrops_kingsleyae
ENSG00000198746	GPATCH3	100	71.094	ENSPSIG00000017160	GPATCH3	99	70.976	Pelodiscus_sinensis
ENSG00000198746	GPATCH3	82	69.355	ENSPMGG00000001703	gpatch3	97	53.635	Periophthalmus_magnuspinnatus
ENSG00000198746	GPATCH3	100	92.969	ENSPEMG00000020632	Gpatch3	100	84.440	Peromyscus_maniculatus_bairdii
ENSG00000198746	GPATCH3	100	83.594	ENSPCIG00000012681	GPATCH3	99	73.913	Phascolarctos_cinereus
ENSG00000198746	GPATCH3	82	72.581	ENSPFOG00000009928	gpatch3	97	55.118	Poecilia_formosa
ENSG00000198746	GPATCH3	82	72.581	ENSPLAG00000023784	gpatch3	97	53.668	Poecilia_latipinna
ENSG00000198746	GPATCH3	82	72.581	ENSPMEG00000010268	gpatch3	97	54.215	Poecilia_mexicana
ENSG00000198746	GPATCH3	82	70.968	ENSPREG00000008873	gpatch3	97	55.577	Poecilia_reticulata
ENSG00000198746	GPATCH3	100	98.438	ENSPPYG00000001675	GPATCH3	100	98.095	Pongo_abelii
ENSG00000198746	GPATCH3	100	92.188	ENSPCAG00000008286	GPATCH3	100	84.952	Procavia_capensis
ENSG00000198746	GPATCH3	100	93.750	ENSPCOG00000020145	GPATCH3	100	91.048	Propithecus_coquereli
ENSG00000198746	GPATCH3	100	90.625	ENSPVAG00000017282	GPATCH3	100	79.468	Pteropus_vampyrus
ENSG00000198746	GPATCH3	82	70.968	ENSPNYG00000005172	gpatch3	99	52.682	Pundamilia_nyererei
ENSG00000198746	GPATCH3	95	61.157	ENSPNAG00000018501	gpatch3	97	56.008	Pygocentrus_nattereri
ENSG00000198746	GPATCH3	100	89.844	ENSRNOG00000007097	Gpatch3	100	83.429	Rattus_norvegicus
ENSG00000198746	GPATCH3	100	97.656	ENSRBIG00000005853	GPATCH3	100	96.000	Rhinopithecus_bieti
ENSG00000198746	GPATCH3	100	97.656	ENSRROG00000038382	GPATCH3	100	96.190	Rhinopithecus_roxellana
ENSG00000198746	GPATCH3	100	94.531	ENSSBOG00000019680	GPATCH3	100	92.562	Saimiri_boliviensis_boliviensis
ENSG00000198746	GPATCH3	100	81.250	ENSSHAG00000014268	GPATCH3	100	73.832	Sarcophilus_harrisii
ENSG00000198746	GPATCH3	96	54.472	ENSSFOG00015009602	gpatch3	98	54.492	Scleropages_formosus
ENSG00000198746	GPATCH3	82	70.968	ENSSMAG00000002067	gpatch3	97	55.773	Scophthalmus_maximus
ENSG00000198746	GPATCH3	82	70.968	ENSSDUG00000017071	gpatch3	96	53.861	Seriola_dumerili
ENSG00000198746	GPATCH3	82	70.968	ENSSLDG00000016549	gpatch3	96	53.663	Seriola_lalandi_dorsalis
ENSG00000198746	GPATCH3	100	67.969	ENSSPUG00000018299	GPATCH3	100	59.023	Sphenodon_punctatus
ENSG00000198746	GPATCH3	82	72.581	ENSSPAG00000013046	gpatch3	97	54.932	Stegastes_partitus
ENSG00000198746	GPATCH3	100	93.750	ENSSSCG00000003564	GPATCH3	99	86.087	Sus_scrofa
ENSG00000198746	GPATCH3	100	66.406	ENSTGUG00000000986	GPATCH3	100	65.509	Taeniopygia_guttata
ENSG00000198746	GPATCH3	82	69.355	ENSTRUG00000013294	gpatch3	98	51.985	Takifugu_rubripes
ENSG00000198746	GPATCH3	82	72.581	ENSTNIG00000009657	gpatch3	99	53.333	Tetraodon_nigroviridis
ENSG00000198746	GPATCH3	100	91.406	ENSTBEG00000002042	GPATCH3	84	91.463	Tupaia_belangeri
ENSG00000198746	GPATCH3	100	90.625	ENSTTRG00000016677	GPATCH3	99	78.927	Tursiops_truncatus
ENSG00000198746	GPATCH3	100	92.969	ENSUAMG00000026235	GPATCH3	100	86.857	Ursus_americanus
ENSG00000198746	GPATCH3	100	92.969	ENSUMAG00000011894	GPATCH3	100	86.857	Ursus_maritimus
ENSG00000198746	GPATCH3	100	93.750	ENSVVUG00000012041	GPATCH3	100	88.190	Vulpes_vulpes
ENSG00000198746	GPATCH3	95	57.377	ENSXETG00000030345	GPATCH3	99	51.400	Xenopus_tropicalis
ENSG00000198746	GPATCH3	82	72.581	ENSXCOG00000016129	gpatch3	97	50.996	Xiphophorus_couchianus
ENSG00000198746	GPATCH3	82	72.581	ENSXMAG00000010749	gpatch3	97	54.054	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005515	protein binding	28414768.	IPI	Function
GO:0005634	nucleus	28397860.	IDA	Component
GO:0005737	cytoplasm	28397860.	IDA	Component
GO:0032480	negative regulation of type I interferon production	28414768.	IMP	Process
GO:0039536	negative regulation of RIG-I signaling pathway	28414768.	IMP	Process
GO:0045893	positive regulation of transcription, DNA-templated	28397860.	IDA	Process