EuRBPDB

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  • Description
  • RBDs
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000198952 (Gene tree)
Gene ID
23381
Gene Symbol
SMG5
Alias
KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5|EST1B
Full Name
SMG5 nonsense mediated mRNA decay factor
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
33,662 bases
Position
chr1:156,249,224-156,282,885
Accession
24644
RBP type
canonical RBP
Summary
SMG5 is involved in nonsense-mediated mRNA decay (Ohnishi et al., 2003 [PubMed 14636577]).[supplied by OMIM, Mar 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000355261EST1PF10374.92.1e-2311
ENSP00000355261EST1_DNA_bindPF10373.97.5e-4012
ENSP00000355261EST1_DNA_bindPF10373.97.5e-4022
ENSP00000355261PIN_4PF13638.67.8e-0511

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
25184677A post-translational regulatory switch on UPF1 controls targeted mRNA degradation.Genes Dev2014 Sep 1Kurosaki Tdoi: 10.1101/gad.245506.114.
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000468993SMG5-202345--- (aa)--
ENST00000473643SMG5-203541--- (aa)--
ENST00000489907SMG5-205535--- (aa)--
ENST00000476954SMG5-2041161--- (aa)--
ENST00000361813SMG5-2014559-ENSP000003552611016 (aa)-Q9UPR3
Gene Model
Click here to download ENSG00000198952's gene model file
Pathways
Pathway IDPathway NameSource
hsa03015mRNA surveillance pathwayKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000198952Platelet Function Tests7.5100000E-007-
ENSG00000198952Platelet Function Tests1.0200000E-006-
ENSG00000198952Platelet Function Tests6.9921000E-006-
ENSG00000198952Erythrocyte Indices3E-920139978
ENSG00000198952Hemoglobins3E-920139978
ENSG00000198952hemoglobin A1c protein, human1E-2324647736
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000198952rs1449913561156276128CTGlycated hemoglobin levels29170429[0.021-0.045] unit increase0.0332EFO_0004541
ENSG00000198952rs22738331156263398?Hemoglobin A1c levels29403010[0.058-0.091] unit decrease novel0.0741EFO_0004541
ENSG00000198952rs758543151156253265?Red cell distribution width30595370EFO_0005192
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000198952's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000198952SMG59967.647ENSAPOG00000019690smg59966.896Acanthochromis_polyacanthus
ENSG00000198952SMG59892.749ENSAMEG00000014458SMG510092.749Ailuropoda_melanoleuca
ENSG00000198952SMG59965.038ENSACIG00000001353smg59966.667Amphilophus_citrinellus
ENSG00000198952SMG59864.729ENSAOCG00000019483smg59366.598Amphiprion_ocellaris
ENSG00000198952SMG59866.501ENSAPEG00000022949smg59866.335Amphiprion_percula
ENSG00000198952SMG59965.896ENSATEG00000005348smg59967.313Anabas_testudineus
ENSG00000198952SMG59878.927ENSAPLG00000010263SMG510078.732Anas_platyrhynchos
ENSG00000198952SMG510098.130ENSANAG00000032899SMG510098.130Aotus_nancymaae
ENSG00000198952SMG59964.587ENSACLG00000009311smg59966.121Astatotilapia_calliptera
ENSG00000198952SMG59944.069ENSBTAG00000021747-9943.520Bos_taurus
ENSG00000198952SMG510096.161ENSBTAG00000009435SMG510096.161Bos_taurus
ENSG00000198952SMG510098.130ENSCJAG00000005684SMG510098.130Callithrix_jacchus
ENSG00000198952SMG510094.587ENSCAFG00000016839SMG510093.996Canis_familiaris
ENSG00000198952SMG510094.587ENSCAFG00020006061SMG510093.996Canis_lupus_dingo
ENSG00000198952SMG59944.653ENSCHIG00000006323-9943.652Capra_hircus
ENSG00000198952SMG510096.063ENSCHIG00000007709SMG510096.063Capra_hircus
ENSG00000198952SMG510097.050ENSTSYG00000004099SMG510097.050Carlito_syrichta
ENSG00000198952SMG59774.645ENSCAPG00000003631SMG510075.286Cavia_aperea
ENSG00000198952SMG510095.972ENSCPOG00000015696SMG510095.678Cavia_porcellus
ENSG00000198952SMG510098.130ENSCCAG00000027409SMG510098.130Cebus_capucinus
ENSG00000198952SMG510099.311ENSCATG00000030539SMG510099.311Cercocebus_atys
ENSG00000198952SMG510096.464ENSCLAG00000003983SMG510096.464Chinchilla_lanigera
ENSG00000198952SMG510099.213ENSCSAG00000002120SMG510099.213Chlorocebus_sabaeus
ENSG00000198952SMG55493.796ENSCHOG00000008741-5793.796Choloepus_hoffmanni
ENSG00000198952SMG59478.905ENSCPBG00000025848SMG510078.600Chrysemys_picta_bellii
ENSG00000198952SMG59335.191ENSCING00000008706-9935.113Ciona_intestinalis
ENSG00000198952SMG510095.079ENSCANG00000029208SMG510095.079Colobus_angolensis_palliatus
ENSG00000198952SMG510092.829ENSCGRG00001006336Smg510092.534Cricetulus_griseus_chok1gshd
ENSG00000198952SMG59892.857ENSCGRG00000005111Smg510092.548Cricetulus_griseus_crigri
ENSG00000198952SMG59965.598ENSCSEG00000014220smg59277.778Cynoglossus_semilaevis
ENSG00000198952SMG59960.916ENSCVAG00000000529smg59961.613Cyprinodon_variegatus
ENSG00000198952SMG59236.786ENSDNOG00000039862-10035.344Dasypus_novemcinctus
ENSG00000198952SMG510091.831ENSDNOG00000000051SMG510091.831Dasypus_novemcinctus
ENSG00000198952SMG510094.008ENSDORG00000010382Smg510093.811Dipodomys_ordii
ENSG00000198952SMG56635.484FBgn0019890Smg56235.484Drosophila_melanogaster
ENSG00000198952SMG58297.087ENSETEG00000010336SMG58397.087Echinops_telfairi
ENSG00000198952SMG59046.921ENSEBUG00000003739smg59846.324Eptatretus_burgeri
ENSG00000198952SMG510097.047ENSEASG00005019122SMG510097.047Equus_asinus_asinus
ENSG00000198952SMG510097.047ENSECAG00000001389SMG510097.047Equus_caballus
ENSG00000198952SMG57298.271ENSEEUG00000012690SMG57398.271Erinaceus_europaeus
ENSG00000198952SMG59965.255ENSELUG00000012585smg59965.159Esox_lucius
ENSG00000198952SMG510093.996ENSFCAG00000011783SMG510093.412Felis_catus
ENSG00000198952SMG55881.970ENSFALG00000001166-9982.077Ficedula_albicollis
ENSG00000198952SMG59893.152ENSFDAG00000017388SMG510093.051Fukomys_damarensis
ENSG00000198952SMG59762.159ENSFHEG00000013939smg59568.301Fundulus_heteroclitus
ENSG00000198952SMG59960.931ENSGMOG00000007310smg59276.376Gadus_morhua
ENSG00000198952SMG59977.618ENSGALG00000029918-10077.324Gallus_gallus
ENSG00000198952SMG58675.566ENSGAFG00000021691smg59567.412Gambusia_affinis
ENSG00000198952SMG510079.772ENSGAGG00000016131SMG510079.487Gopherus_agassizii
ENSG00000198952SMG510099.311ENSGGOG00000010932SMG510099.311Gorilla_gorilla
ENSG00000198952SMG59964.306ENSHBUG00000008654smg59965.271Haplochromis_burtoni
ENSG00000198952SMG510093.026ENSHGLG00000019152SMG510093.222Heterocephalus_glaber_female
ENSG00000198952SMG59093.100ENSHGLG00100015948SMG59993.319Heterocephalus_glaber_male
ENSG00000198952SMG58673.350ENSHCOG00000010229smg58378.571Hippocampus_comes
ENSG00000198952SMG59960.398ENSIPUG00000006624Smg59962.078Ictalurus_punctatus
ENSG00000198952SMG510096.657ENSSTOG00000001780SMG510096.657Ictidomys_tridecemlineatus
ENSG00000198952SMG510093.032ENSJJAG00000022763Smg510092.836Jaculus_jaculus
ENSG00000198952SMG55059.524ENSKMAG00000014586smg59961.333Kryptolebias_marmoratus
ENSG00000198952SMG59966.152ENSLBEG00000002145smg59278.302Labrus_bergylta
ENSG00000198952SMG510064.957ENSLACG00000010521SMG510064.862Latimeria_chalumnae
ENSG00000198952SMG59678.638ENSLOCG00000008380smg59278.673Lepisosteus_oculatus
ENSG00000198952SMG510094.587ENSLAFG00000006241SMG510094.587Loxodonta_africana
ENSG00000198952SMG510099.213ENSMFAG00000045357SMG510099.213Macaca_fascicularis
ENSG00000198952SMG510099.114ENSMMUG00000000090SMG510099.114Macaca_mulatta
ENSG00000198952SMG510099.114ENSMNEG00000044425SMG510099.114Macaca_nemestrina
ENSG00000198952SMG510092.941ENSMLEG00000041192SMG510092.941Mandrillus_leucophaeus
ENSG00000198952SMG56358.709ENSMZEG00005016543smg510059.125Maylandia_zebra
ENSG00000198952SMG59963.645ENSMZEG00005015815smg59964.504Maylandia_zebra
ENSG00000198952SMG510092.043ENSMAUG00000010381Smg510091.847Mesocricetus_auratus
ENSG00000198952SMG55544.696ENSMAUG00000000043-9644.618Mesocricetus_auratus
ENSG00000198952SMG510097.441ENSMICG00000002257SMG510097.441Microcebus_murinus
ENSG00000198952SMG510091.569ENSMOCG00000016590Smg510091.176Microtus_ochrogaster
ENSG00000198952SMG59958.897ENSMMOG00000017199smg59959.445Mola_mola
ENSG00000198952SMG59734.990ENSMODG00000004511-9934.294Monodelphis_domestica
ENSG00000198952SMG59337.317ENSMODG00000004532-8337.940Monodelphis_domestica
ENSG00000198952SMG58789.977ENSMODG00000016901SMG59890.428Monodelphis_domestica
ENSG00000198952SMG57837.783ENSMODG00000010675-8437.931Monodelphis_domestica
ENSG00000198952SMG57539.633ENSMODG00000004735-8639.733Monodelphis_domestica
ENSG00000198952SMG59960.000ENSMALG00000010375smg59959.414Monopterus_albus
ENSG00000198952SMG510092.534MGP_CAROLIEiJ_G0025163Smg510098.883Mus_caroli
ENSG00000198952SMG510092.731ENSMUSG00000001415Smg59998.883Mus_musculus
ENSG00000198952SMG510092.345MGP_PahariEiJ_G0026606Smg510098.883Mus_pahari
ENSG00000198952SMG510092.534MGP_SPRETEiJ_G0026104Smg510098.883Mus_spretus
ENSG00000198952SMG59492.947ENSMPUG00000004546SMG510092.526Mustela_putorius_furo
ENSG00000198952SMG510095.597ENSMLUG00000008518SMG510095.597Myotis_lucifugus
ENSG00000198952SMG510094.002ENSNGAG00000020706Smg510093.707Nannospalax_galili
ENSG00000198952SMG59844.679ENSNGAG00000012101-9844.489Nannospalax_galili
ENSG00000198952SMG59763.063ENSNBRG00000004332smg59865.000Neolamprologus_brichardi
ENSG00000198952SMG510099.016ENSNLEG00000012439SMG510099.016Nomascus_leucogenys
ENSG00000198952SMG510088.004ENSMEUG00000012834SMG510087.119Notamacropus_eugenii
ENSG00000198952SMG510094.291ENSOPRG00000009152SMG510094.291Ochotona_princeps
ENSG00000198952SMG510095.768ENSODEG00000012237SMG510095.768Octodon_degus
ENSG00000198952SMG55059.781ENSONIG00000008632smg55555.429Oreochromis_niloticus
ENSG00000198952SMG59895.565ENSOCUG00000012886SMG510095.565Oryctolagus_cuniculus
ENSG00000198952SMG58940.700ENSOCUG00000023338-9940.591Oryctolagus_cuniculus
ENSG00000198952SMG55059.300ENSORLG00000016239smg59962.063Oryzias_latipes
ENSG00000198952SMG59964.327ENSORLG00020013127smg59965.984Oryzias_latipes_hni
ENSG00000198952SMG59964.237ENSORLG00015019014smg59965.631Oryzias_latipes_hsok
ENSG00000198952SMG510095.276ENSOGAG00000004966SMG510095.276Otolemur_garnettii
ENSG00000198952SMG510096.161ENSOARG00000005778SMG510096.161Ovis_aries
ENSG00000198952SMG59944.575ENSOARG00000011963-9943.665Ovis_aries
ENSG00000198952SMG510099.409ENSPPAG00000011996SMG510099.409Pan_paniscus
ENSG00000198952SMG59893.851ENSPPRG00000011901SMG510093.246Panthera_pardus
ENSG00000198952SMG59985.672ENSPTIG00000007892SMG59885.729Panthera_tigris_altaica
ENSG00000198952SMG510099.606ENSPTRG00000049282-10099.606Pan_troglodytes
ENSG00000198952SMG510099.606ENSPTRG00000023925SMG510099.606Pan_troglodytes
ENSG00000198952SMG510099.311ENSPANG00000011201SMG510099.311Papio_anubis
ENSG00000198952SMG59965.414ENSPKIG00000009402smg59965.664Paramormyrops_kingsleyae
ENSG00000198952SMG59881.132ENSPSIG00000015198SMG510080.674Pelodiscus_sinensis
ENSG00000198952SMG59960.331ENSPMGG00000010465smg59959.871Periophthalmus_magnuspinnatus
ENSG00000198952SMG55646.060ENSPEMG00000010022-9545.017Peromyscus_maniculatus_bairdii
ENSG00000198952SMG510093.026ENSPEMG00000001819Smg510092.731Peromyscus_maniculatus_bairdii
ENSG00000198952SMG59949.324ENSPMAG00000000410smg510049.430Petromyzon_marinus
ENSG00000198952SMG510089.489ENSPCIG00000018938SMG510089.882Phascolarctos_cinereus
ENSG00000198952SMG55060.405ENSPFOG00000010191smg59962.266Poecilia_formosa
ENSG00000198952SMG55060.482ENSPLAG00000009332smg59962.087Poecilia_latipinna
ENSG00000198952SMG59965.706ENSPMEG00000014105smg59965.322Poecilia_mexicana
ENSG00000198952SMG59375.792ENSPREG00000017713smg59961.909Poecilia_reticulata
ENSG00000198952SMG510099.508ENSPPYG00000000723SMG510099.508Pongo_abelii
ENSG00000198952SMG57597.790ENSPCAG00000008412SMG58885.654Procavia_capensis
ENSG00000198952SMG510097.343ENSPCOG00000004741SMG510097.343Propithecus_coquereli
ENSG00000198952SMG510086.122ENSPVAG00000016748SMG510086.122Pteropus_vampyrus
ENSG00000198952SMG59363.657ENSPNYG00000013397smg59960.939Pundamilia_nyererei
ENSG00000198952SMG510092.731ENSRNOG00000019590Smg510092.436Rattus_norvegicus
ENSG00000198952SMG510099.016ENSRBIG00000027428SMG510099.016Rhinopithecus_bieti
ENSG00000198952SMG510098.917ENSRROG00000030035SMG510098.917Rhinopithecus_roxellana
ENSG00000198952SMG510098.130ENSSBOG00000033339SMG510098.130Saimiri_boliviensis_boliviensis
ENSG00000198952SMG59934.198ENSSHAG00000009572-8042.752Sarcophilus_harrisii
ENSG00000198952SMG59889.089ENSSHAG00000014163SMG510089.489Sarcophilus_harrisii
ENSG00000198952SMG58840.157ENSSHAG00000000561-8740.157Sarcophilus_harrisii
ENSG00000198952SMG56439.766ENSSHAG00000000935-8240.854Sarcophilus_harrisii
ENSG00000198952SMG59966.537ENSSFOG00015024175smg59966.439Scleropages_formosus
ENSG00000198952SMG59960.781ENSSMAG00000013059smg59962.333Scophthalmus_maximus
ENSG00000198952SMG55060.145ENSSDUG00000007122smg59276.869Seriola_dumerili
ENSG00000198952SMG59960.601ENSSLDG00000011418smg59277.594Seriola_lalandi_dorsalis
ENSG00000198952SMG59081.025ENSSARG00000012484SMG510081.025Sorex_araneus
ENSG00000198952SMG59477.609ENSSPUG00000002260SMG510076.798Sphenodon_punctatus
ENSG00000198952SMG59176.581ENSSPAG00000014266smg59965.351Stegastes_partitus
ENSG00000198952SMG59975.271ENSSSCG00000039308-10075.369Sus_scrofa
ENSG00000198952SMG510097.146ENSSSCG00000006490-10097.146Sus_scrofa
ENSG00000198952SMG59980.613ENSTGUG00000003748-10080.371Taeniopygia_guttata
ENSG00000198952SMG59964.768ENSTRUG00000012580smg59964.575Takifugu_rubripes
ENSG00000198952SMG59965.504ENSTNIG00000010303smg59965.276Tetraodon_nigroviridis
ENSG00000198952SMG560100.000ENSTBEG00000002777SMG560100.000Tupaia_belangeri
ENSG00000198952SMG510091.831ENSTTRG00000001401SMG510091.831Tursiops_truncatus
ENSG00000198952SMG510093.602ENSUAMG00000013721SMG510093.110Ursus_americanus
ENSG00000198952SMG59889.146ENSUMAG00000018041SMG59788.643Ursus_maritimus
ENSG00000198952SMG59886.983ENSVPAG00000009446SMG59986.983Vicugna_pacos
ENSG00000198952SMG510094.390ENSVVUG00000005887SMG510093.898Vulpes_vulpes
ENSG00000198952SMG57765.952ENSXETG00000033791SMG59965.195Xenopus_tropicalis
ENSG00000198952SMG57675.339ENSXCOG00000004379smg59568.681Xiphophorus_couchianus
ENSG00000198952SMG59375.113ENSXMAG00000013499smg59965.962Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay16488880.TASProcess
GO:0005515protein binding12699629.14636577.20930030.21145460.23348841.IPIFunction
GO:0005634nucleus14636577.IDAComponent
GO:0005697telomerase holoenzyme complex21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005737cytoplasm14636577.IDAComponent
GO:0005829cytosol-TASComponent
GO:0006406mRNA export from nucleus16488880.TASProcess
GO:0007004telomere maintenance via telomerase21873635.IBAProcess
GO:0031625ubiquitin protein ligase binding16809764.IPIFunction
GO:0032204regulation of telomere maintenance16809764.IMPProcess
GO:0032210regulation of telomere maintenance via telomerase21873635.IBAProcess
GO:0032210regulation of telomere maintenance via telomerase16507993.TASProcess
GO:0035303regulation of dephosphorylation14636577.IMPProcess
GO:0042162telomeric DNA binding21873635.IBAFunction
GO:0042162telomeric DNA binding17916692.IDAFunction
GO:0042826histone deacetylase binding16809764.IPIFunction
GO:0051721protein phosphatase 2A binding14636577.IDAFunction
GO:0070034telomerase RNA binding21873635.IBAFunction
GO:0070034telomerase RNA binding15857955.IPIFunction

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