EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000204356 (Gene tree)
Gene ID
7936
Gene Symbol
NELFE
Alias
RD|D6S45|NELF-E|RDP|RDBP
Full Name
negative elongation factor complex member E
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
7,024 bases
Position
chr6:31,952,087-31,959,110
Accession
13974
RBP type
canonical RBP
Summary
The protein encoded by this gene is part of a complex termed negative elongation factor (NELF) which represses RNA polymerase II transcript elongation. This protein bears similarity to nuclear RNA-binding proteins; however, it has not been demonstrated that this protein binds RNA. The protein contains a tract of alternating basic and acidic residues, largely arginine (R) and aspartic acid (D). The gene localizes to the major histocompatibility complex (MHC) class III region on chromosome 6. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000397914RRM_1PF00076.227.8e-1111
ENSP00000388400RRM_1PF00076.228.3e-1111
ENSP00000364578RRM_1PF00076.229.6e-1111
ENSP00000364574RRM_1PF00076.229.9e-1111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
12612062Human transcription elongation factor NELF: identification of novel subunits and reconstitution of the functionally active complex.Mol Cell Biol2003 MarNarita T-
11940650Evidence that negative elongation factor represses transcription elongation through binding to a DRB sensitivity-inducing factor/RNA polymerase II complex and RNA.Mol Cell Biol2002 MayYamaguchi Y-
19556007Role of RDBP and SKIV2L variants in the major histocompatibility complex class III region in polypoidal choroidal vasculopathy etiology.Ophthalmology2009 AugKondo Ndoi: 10.1016/j.ophtha.2009.03.004
22614758Overexpression of the RD RNA binding protein in hepatitis C virus-related hepatocellular carcinoma.Oncol Rep2012 AugIida Mdoi: 10.3892/or.2012.1821
24453987Defining NELF-E RNA binding in HIV-1 and promoter-proximal pause regions.PLoS Genet2014 JanPagano JMdoi: 10.1371/journal.pgen.1004090
28697339Oncogenic Activation of the RNA Binding Protein NELFE and MYC Signaling in Hepatocellular Carcinoma.Cancer Cell2017 Jul 10Dang Hdoi: 10.1016/j.ccell.2017.06.002.
29523821p38-MK2 signaling axis regulates RNA metabolism after UV-light-induced DNA damage.Nat Commun2018 Mar 9Borisova MEdoi: 10.1038/s41467-018-03417-3.
30833661NELFE-Dependent MYC Signature Identifies a Unique Cancer Subtype in Hepatocellular Carcinoma.Sci Rep2019 Mar 4Dang Hdoi: 10.1038/s41598-019-39727-9.
24809628Comprehensive analysis of RNA-protein interactions by high-throughput sequencing-RNA affinity profiling.Nat Methods2014 JunTome JMdoi: 10.1038/nmeth.2970
24553662High-throughput binding characterization of RNA aptamer selections using a microplate-based multiplex microcolumn device.Anal Bioanal Chem2014 AprSzeto Kdoi: 10.1007/s00216-014-7661-7
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000488426NELFE-2091855--- (aa)--
ENST00000375425NELFE-2011405-ENSP00000364574387 (aa)-P18615
ENST00000375429NELFE-2021584XM_006715205ENSP00000364578380 (aa)XP_006715268P18615
ENST00000481121NELFE-2081543--- (aa)--
ENST00000444811NELFE-2061202-ENSP00000388400350 (aa)-P18615
ENST00000492539NELFE-212583-ENSP0000041918357 (aa)-E7EWR7
ENST00000426722NELFE-203765-ENSP00000394340159 (aa)-A2ABK4
ENST00000494956NELFE-213568-ENSP0000042020536 (aa)-E7ENC7
ENST00000454913NELFE-207914-ENSP00000409389293 (aa)-A0A0A0MT02
ENST00000492185NELFE-2111786--- (aa)--
ENST00000436289NELFE-204906-ENSP00000414029260 (aa)-E9PD43
ENST00000491139NELFE-210582--- (aa)--
ENST00000441998NELFE-2051075-ENSP00000397914333 (aa)-A0A0A0MSN9
ENST00000625905NELFE-214111-ENSP0000048688436 (aa)-E7ENC7
Gene Model
Click here to download ENSG00000204356's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000204356Breast Neoplasms1.47E-1017660530
ENSG00000204356Macular Degeneration5.68E-19-
ENSG00000204356Macular Degeneration6.1E-10-
ENSG00000204356Macular Degeneration4.889E-1820385819
ENSG00000204356Macular Degeneration1.74E-0920385819
ENSG00000204356Macular Degeneration3E-723577725
ENSG00000204356Macular Degeneration2E-1023577725
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000204356rs9501161631956550ABlood protein levels29875488[0.21-0.37] unit decrease0.29EFO_0007937
ENSG00000204356rs35917342631955937ATBlood protein levels29875488[1.1-1.26] unit increase1.18EFO_0007937
ENSG00000204356rs4151665631953289CBlood protein levels29875488[0.3-0.5] unit increase0.4EFO_0007937
ENSG00000204356rs522162631952140?Age-related macular degeneration23577725[1.82-3.03]2.33EFO_0001365
ENSG00000204356rs522162631952140?Age-related macular degeneration (extreme sampling)23577725[1.69-3.33]2.38EFO_0001365
ENSG00000204356rs550513631952910TBlood protein levels28240269[0.55-0.85] unit increase0.702EFO_0008096
ENSG00000204356rs80082277631958071CvWF levels30586737[0.035-0.073] unit decrease0.0536EFO_0004629
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000204356's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000204356NELFE9174.483ENSAPOG00000008274nelfe9968.079Acanthochromis_polyacanthus
ENSG00000204356NELFE10098.742ENSAMEG00000002062NELFE9996.364Ailuropoda_melanoleuca
ENSG00000204356NELFE9175.172ENSAOCG00000017263nelfe9968.378Amphiprion_ocellaris
ENSG00000204356NELFE9175.172ENSAPEG00000001209nelfe9970.809Amphiprion_percula
ENSG00000204356NELFE8677.372ENSATEG00000007587nelfe9067.204Anabas_testudineus
ENSG00000204356NELFE9877.707ENSACAG00000011678NELFE10069.149Anolis_carolinensis
ENSG00000204356NELFE10098.742ENSANAG00000038256NELFE10097.368Aotus_nancymaae
ENSG00000204356NELFE9174.483ENSACLG00000006848nelfe9966.573Astatotilapia_calliptera
ENSG00000204356NELFE9774.839ENSAMXG00000011495nelfe9967.751Astyanax_mexicanus
ENSG00000204356NELFE10098.113ENSBTAG00000007453NELFE10095.263Bos_taurus
ENSG00000204356NELFE10099.371ENSCJAG00000002368-10097.416Callithrix_jacchus
ENSG00000204356NELFE10098.742ENSCAFG00020000938NELFE10095.789Canis_lupus_dingo
ENSG00000204356NELFE10098.113ENSCHIG00000013713NELFE10093.947Capra_hircus
ENSG00000204356NELFE10096.855ENSTSYG00000012132-10094.359Carlito_syrichta
ENSG00000204356NELFE9792.453ENSCAPG00000015145NELFE8995.252Cavia_aperea
ENSG00000204356NELFE10096.226ENSCPOG00000031829NELFE10095.288Cavia_porcellus
ENSG00000204356NELFE10099.371ENSCCAG00000014945NELFE10097.135Cebus_capucinus
ENSG00000204356NELFE10099.371ENSCATG00000028969NELFE10097.668Cercocebus_atys
ENSG00000204356NELFE10094.474ENSCLAG00000009684NELFE10094.474Chinchilla_lanigera
ENSG00000204356NELFE10099.371ENSCSAG00000008969NELFE10097.368Chlorocebus_sabaeus
ENSG00000204356NELFE9182.192ENSCPBG00000000225NELFE9758.754Chrysemys_picta_bellii
ENSG00000204356NELFE5348.529ENSCSAVG00000004231-8437.168Ciona_savignyi
ENSG00000204356NELFE10099.371ENSCANG00000022451NELFE10097.468Colobus_angolensis_palliatus
ENSG00000204356NELFE10096.226ENSCGRG00001016608Nelfe10091.777Cricetulus_griseus_chok1gshd
ENSG00000204356NELFE9389.375ENSCGRG00000014034Nelfe9090.964Cricetulus_griseus_crigri
ENSG00000204356NELFE9171.724ENSCSEG00000011352nelfe9967.246Cynoglossus_semilaevis
ENSG00000204356NELFE9176.552ENSCVAG00000003087nelfe9968.497Cyprinodon_variegatus
ENSG00000204356NELFE9171.034ENSDARG00000004343nelfe10068.012Danio_rerio
ENSG00000204356NELFE9380.563ENSDNOG00000006996-9481.493Dasypus_novemcinctus
ENSG00000204356NELFE10098.742ENSDNOG00000041886-10095.812Dasypus_novemcinctus
ENSG00000204356NELFE10098.113ENSDORG00000011705Nelfe8978.611Dipodomys_ordii
ENSG00000204356NELFE9266.892ENSEBUG00000017070nelfe9959.563Eptatretus_burgeri
ENSG00000204356NELFE10098.742ENSEASG00005015538NELFE10094.402Equus_asinus_asinus
ENSG00000204356NELFE10098.742ENSECAG00000012274NELFE8897.403Equus_caballus
ENSG00000204356NELFE10095.597ENSEEUG00000005004NELFE7597.778Erinaceus_europaeus
ENSG00000204356NELFE9969.182ENSELUG00000005830nelfe7176.289Esox_lucius
ENSG00000204356NELFE10098.742ENSFCAG00000004518NELFE10097.368Felis_catus
ENSG00000204356NELFE10094.969ENSFDAG00000011589NELFE10085.175Fukomys_damarensis
ENSG00000204356NELFE9176.552ENSFHEG00000008694nelfe9968.000Fundulus_heteroclitus
ENSG00000204356NELFE9182.192ENSGALG00000045676NELFE9576.378Gallus_gallus
ENSG00000204356NELFE9958.861ENSGAFG00000002349nelfe8765.667Gambusia_affinis
ENSG00000204356NELFE9174.483ENSGACG00000002935nelfe9966.667Gasterosteus_aculeatus
ENSG00000204356NELFE9182.192ENSGAGG00000005411NELFE10065.517Gopherus_agassizii
ENSG00000204356NELFE10099.371ENSGGOG00000002265NELFE10097.933Gorilla_gorilla
ENSG00000204356NELFE9174.483ENSHBUG00000023659nelfe9969.253Haplochromis_burtoni
ENSG00000204356NELFE7287.591ENSHGLG00000016601NELFE9287.004Heterocephalus_glaber_female
ENSG00000204356NELFE9788.387ENSHGLG00100014073NELFE10073.077Heterocephalus_glaber_male
ENSG00000204356NELFE9173.793ENSHCOG00000007147nelfe9762.632Hippocampus_comes
ENSG00000204356NELFE9969.620ENSIPUG00000016138nelfe9968.529Ictalurus_punctatus
ENSG00000204356NELFE10096.855ENSSTOG00000027409NELFE10093.158Ictidomys_tridecemlineatus
ENSG00000204356NELFE9490.169ENSJJAG00000014005Nelfe9089.851Jaculus_jaculus
ENSG00000204356NELFE9176.552ENSKMAG00000002391nelfe9966.129Kryptolebias_marmoratus
ENSG00000204356NELFE8675.182ENSLBEG00000013181nelfe10068.182Labrus_bergylta
ENSG00000204356NELFE10097.484ENSLAFG00000028155NELFE10096.073Loxodonta_africana
ENSG00000204356NELFE9977.143ENSMFAG00000031089-5069.841Macaca_fascicularis
ENSG00000204356NELFE10099.371ENSMFAG00000036108-10099.211Macaca_fascicularis
ENSG00000204356NELFE9676.316ENSMMUG00000041521-10076.901Macaca_mulatta
ENSG00000204356NELFE10099.371ENSMMUG00000000735-10099.211Macaca_mulatta
ENSG00000204356NELFE10099.371ENSMNEG00000032542NELFE10098.438Macaca_nemestrina
ENSG00000204356NELFE10099.371ENSMLEG00000030245NELFE10097.710Mandrillus_leucophaeus
ENSG00000204356NELFE9970.701ENSMAMG00000003031nelfe9465.897Mastacembelus_armatus
ENSG00000204356NELFE9174.483ENSMZEG00005026412nelfe9966.573Maylandia_zebra
ENSG00000204356NELFE6287.500ENSMGAG00000001297NELFE6687.500Meleagris_gallopavo
ENSG00000204356NELFE10094.969ENSMAUG00000016812Nelfe10085.175Mesocricetus_auratus
ENSG00000204356NELFE10098.113ENSMICG00000003287NELFE10092.895Microcebus_murinus
ENSG00000204356NELFE10096.226ENSMOCG00000003723Nelfe10093.801Microtus_ochrogaster
ENSG00000204356NELFE9175.172ENSMMOG00000014544nelfe9965.882Mola_mola
ENSG00000204356NELFE9395.946ENSMODG00000015063NELFE9694.857Monodelphis_domestica
ENSG00000204356NELFE9869.855ENSMALG00000010624nelfe10070.317Monopterus_albus
ENSG00000204356NELFE10094.340MGP_CAROLIEiJ_G0021478Nelfe10091.689Mus_caroli
ENSG00000204356NELFE10094.340ENSMUSG00000024369Nelfe10091.644Mus_musculus
ENSG00000204356NELFE10094.969MGP_PahariEiJ_G0020473Nelfe10092.453Mus_pahari
ENSG00000204356NELFE10094.340MGP_SPRETEiJ_G0022383Nelfe10091.689Mus_spretus
ENSG00000204356NELFE10098.742ENSMPUG00000010581NELFE9996.104Mustela_putorius_furo
ENSG00000204356NELFE10096.855ENSMLUG00000000622-9991.384Myotis_lucifugus
ENSG00000204356NELFE10083.684ENSMLUG00000030380-10079.221Myotis_lucifugus
ENSG00000204356NELFE9972.487ENSMLUG00000028808-10075.397Myotis_lucifugus
ENSG00000204356NELFE10080.469ENSMLUG00000028069-10079.744Myotis_lucifugus
ENSG00000204356NELFE10085.093ENSMLUG00000028182-10080.412Myotis_lucifugus
ENSG00000204356NELFE10098.113ENSNGAG00000016248Nelfe10090.027Nannospalax_galili
ENSG00000204356NELFE9167.785ENSNBRG00000018756nelfe9968.421Neolamprologus_brichardi
ENSG00000204356NELFE10083.073ENSMEUG00000006053NELFE10083.333Notamacropus_eugenii
ENSG00000204356NELFE10096.855ENSOPRG00000003942NELFE10093.005Ochotona_princeps
ENSG00000204356NELFE10096.226ENSODEG00000017670NELFE10095.418Octodon_degus
ENSG00000204356NELFE9175.172ENSONIG00000013513nelfe9969.209Oreochromis_niloticus
ENSG00000204356NELFE10098.742ENSOCUG00000007012NELFE10095.103Oryctolagus_cuniculus
ENSG00000204356NELFE8674.638ENSORLG00000001948nelfe6163.934Oryzias_latipes
ENSG00000204356NELFE8674.638ENSORLG00020000791nelfe9966.038Oryzias_latipes_hni
ENSG00000204356NELFE8673.913ENSORLG00015016824nelfe9965.527Oryzias_latipes_hsok
ENSG00000204356NELFE9173.288ENSOMEG00000008581nelfe9957.618Oryzias_melastigma
ENSG00000204356NELFE9998.101ENSOGAG00000009574NELFE9995.561Otolemur_garnettii
ENSG00000204356NELFE10098.113ENSOARG00000002616NELFE9994.256Ovis_aries
ENSG00000204356NELFE10099.371ENSPPAG00000039942NELFE10098.972Pan_paniscus
ENSG00000204356NELFE10098.742ENSPPRG00000004421NELFE10097.368Panthera_pardus
ENSG00000204356NELFE10098.742ENSPTIG00000003753NELFE10097.368Panthera_tigris_altaica
ENSG00000204356NELFE10098.742ENSPTRG00000017996NELFE10098.715Pan_troglodytes
ENSG00000204356NELFE10099.371ENSPANG00000019366NELFE10097.710Papio_anubis
ENSG00000204356NELFE9772.674ENSPKIG00000012048nelfe9972.093Paramormyrops_kingsleyae
ENSG00000204356NELFE7573.950ENSPMGG00000019716nelfe9963.395Periophthalmus_magnuspinnatus
ENSG00000204356NELFE10095.597ENSPEMG00000015423Nelfe10091.467Peromyscus_maniculatus_bairdii
ENSG00000204356NELFE9295.890ENSPCIG00000018791NELFE10081.980Phascolarctos_cinereus
ENSG00000204356NELFE9971.975ENSPFOG00000003019nelfe9967.797Poecilia_formosa
ENSG00000204356NELFE9971.975ENSPLAG00000018174nelfe9668.286Poecilia_latipinna
ENSG00000204356NELFE9971.975ENSPMEG00000006918nelfe9667.797Poecilia_mexicana
ENSG00000204356NELFE7076.786ENSPREG00000002338nelfe8952.367Poecilia_reticulata
ENSG00000204356NELFE10098.691ENSPPYG00000016471NELFE10098.691Pongo_abelii
ENSG00000204356NELFE6894.186ENSPCAG00000004108NELFE6893.411Procavia_capensis
ENSG00000204356NELFE10096.855ENSPCOG00000024944NELFE10095.526Propithecus_coquereli
ENSG00000204356NELFE10098.113ENSPVAG00000005135NELFE10095.263Pteropus_vampyrus
ENSG00000204356NELFE9174.483ENSPNYG00000017837nelfe9969.253Pundamilia_nyererei
ENSG00000204356NELFE9175.862ENSPNAG00000011802nelfe9967.204Pygocentrus_nattereri
ENSG00000204356NELFE10094.969ENSRNOG00000000420Nelfe10092.453Rattus_norvegicus
ENSG00000204356NELFE10099.371ENSRBIG00000028593-10096.316Rhinopithecus_bieti
ENSG00000204356NELFE9789.032ENSRBIG00000028905-10073.670Rhinopithecus_bieti
ENSG00000204356NELFE10099.371ENSRROG00000041993NELFE10096.154Rhinopithecus_roxellana
ENSG00000204356NELFE10099.371ENSSBOG00000035865NELFE10097.674Saimiri_boliviensis_boliviensis
ENSG00000204356NELFE10093.082ENSSHAG00000008908NELFE10089.460Sarcophilus_harrisii
ENSG00000204356NELFE9175.862ENSSFOG00015017039nelfe9967.742Scleropages_formosus
ENSG00000204356NELFE9177.931ENSSMAG00000020170nelfe10068.800Scophthalmus_maximus
ENSG00000204356NELFE9175.172ENSSDUG00000020062nelfe9967.568Seriola_dumerili
ENSG00000204356NELFE9166.897ENSSLDG00000024412nelfe9967.341Seriola_lalandi_dorsalis
ENSG00000204356NELFE9390.986ENSSARG00000003684NELFE9492.537Sorex_araneus
ENSG00000204356NELFE9878.981ENSSPUG00000012971NELFE10064.362Sphenodon_punctatus
ENSG00000204356NELFE9175.172ENSSPAG00000012953nelfe7966.667Stegastes_partitus
ENSG00000204356NELFE10098.742ENSSSCG00000001423NELFE10096.579Sus_scrofa
ENSG00000204356NELFE9174.483ENSTRUG00000025596nelfe8469.653Takifugu_rubripes
ENSG00000204356NELFE10098.113ENSTTRG00000005923NELFE10094.474Tursiops_truncatus
ENSG00000204356NELFE10098.113ENSUAMG00000024338NELFE10096.073Ursus_americanus
ENSG00000204356NELFE10098.113ENSUMAG00000012674NELFE10096.073Ursus_maritimus
ENSG00000204356NELFE8776.812ENSXETG00000010931nelfe7177.778Xenopus_tropicalis
ENSG00000204356NELFE9760.811ENSXCOG00000019513nelfe9964.826Xiphophorus_couchianus
ENSG00000204356NELFE9971.975ENSXMAG00000014078nelfe9967.416Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003682chromatin binding-IEAFunction
GO:0003723RNA binding22658674.HDAFunction
GO:0003723RNA binding2119325.NASFunction
GO:0005515protein binding12612062.14667819.25416956.26496610.IPIFunction
GO:0005634nucleus2119325.NASComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005886plasma membrane-IDAComponent
GO:0006366transcription by RNA polymerase II-TASProcess
GO:0006368transcription elongation from RNA polymerase II promoter-TASProcess
GO:0016604nuclear body-IDAComponent
GO:0032021NELF complex12612062.IDAComponent
GO:0034244negative regulation of transcription elongation from RNA polymerase II promoter-IEAProcess
GO:0045944positive regulation of transcription by RNA polymerase II-IEAProcess
GO:0050434positive regulation of viral transcription-TASProcess
GO:0051571positive regulation of histone H3-K4 methylation-IEAProcess
GO:0070374positive regulation of ERK1 and ERK2 cascade-IEAProcess
GO:1900364negative regulation of mRNA polyadenylation19575011.IMPProcess

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