EuRBPDB

Description

RBDs

Literatures

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000205022 (Gene tree)
Gene ID: 390748
Gene Symbol: PABPN1L
Alias: ePABP2
Full Name: poly(A) binding protein nuclear 1 like, cytoplasmic
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Minus strand
Length: 7,534 bases
Position: chr16:88,862,623-88,870,156
Accession: 37237
RBP type: canonical RBP
Summary: (Poly(A) Binding Protein Nuclear 1 Like, Cytoplasmic) is a Protein Coding gene. Among its related pathways are Influenza A and mRNA surveillance pathway. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and nucleotide binding. An important paralog of this gene is PABPN1.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000408598	RRM_1	PF00076.22	1.8e-14	1	1
ENSP00000405259	RRM_1	PF00076.22	1.5e-05	1	1

Literatures on RNA binding capacity

PID	Title	Article	Time	Author	Doi
15083517	Xenopus embryonic poly(A) binding protein 2 (ePABP2) defines a new family of cytoplasmic poly(A) binding proteins expressed during the early stages of vertebrate development.	Genesis	2004 Apr	Good PJ	-
19819433	Messenger RNA expression of Pabpnl1 and Mbd3l2 genes in oocytes and cleavage embryos.	Fertil Steril	2010 May 15	Biase FH	doi: 10.1016/j.fertnstert.2009.08.051

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000419291	PABPN1L-202	1272	XM_017023230	ENSP00000408598	278 (aa)	XP_016878719	A6NDY0
ENST00000547152	PABPN1L-203	854	-	ENSP00000449247	266 (aa)	-	A0A1C7CYY8
ENST00000411789	PABPN1L-201	873	-	ENSP00000405259	255 (aa)	-	A6NDY0

Gene Model

Click here to download ENSG00000205022's gene model file

Pathways

Pathway ID	Pathway Name	Source
hsa03015	mRNA surveillance pathway	KEGG
hsa05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000205022's network

* RBP PPI network refers to all genes directly bind to RBP

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSG00000205022	PABPN1L	71	50.246	ENSG00000100836	PABPN1	94	58.889

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000205022	PABPN1L	55	56.494	ENSACIG00000021400	PABPN1L	85	55.280	Amphilophus_citrinellus
ENSG00000205022	PABPN1L	58	52.761	ENSAOCG00000019844	PABPN1L	71	51.500	Amphiprion_ocellaris
ENSG00000205022	PABPN1L	58	52.761	ENSAPEG00000019534	PABPN1L	71	51.500	Amphiprion_percula
ENSG00000205022	PABPN1L	70	59.278	ENSACAG00000013250	PABPN1L	99	59.278	Anolis_carolinensis
ENSG00000205022	PABPN1L	100	81.295	ENSANAG00000038178	PABPN1L	100	81.295	Aotus_nancymaae
ENSG00000205022	PABPN1L	72	50.249	ENSACLG00000025147	PABPN1L	71	50.746	Astatotilapia_calliptera
ENSG00000205022	PABPN1L	58	56.875	ENSAMXG00000010873	PABPN1L	71	53.968	Astyanax_mexicanus
ENSG00000205022	PABPN1L	100	65.950	ENSBTAG00000023752	-	100	65.233	Bos_taurus
ENSG00000205022	PABPN1L	51	78.723	ENSBTAG00000006727	-	86	78.723	Bos_taurus
ENSG00000205022	PABPN1L	100	81.655	ENSCJAG00000045284	PABPN1L	100	82.734	Callithrix_jacchus
ENSG00000205022	PABPN1L	99	63.158	ENSCHIG00000013987	PABPN1L	100	59.596	Capra_hircus
ENSG00000205022	PABPN1L	95	65.809	ENSCAPG00000007240	PABPN1L	100	65.934	Cavia_aperea
ENSG00000205022	PABPN1L	100	67.626	ENSCPOG00000025951	PABPN1L	100	67.742	Cavia_porcellus
ENSG00000205022	PABPN1L	100	82.014	ENSCCAG00000027631	PABPN1L	100	82.374	Cebus_capucinus
ENSG00000205022	PABPN1L	100	92.446	ENSCATG00000031060	PABPN1L	100	91.007	Cercocebus_atys
ENSG00000205022	PABPN1L	100	71.326	ENSCLAG00000000704	PABPN1L	100	69.176	Chinchilla_lanigera
ENSG00000205022	PABPN1L	100	84.694	ENSCSAG00000002881	PABPN1L	100	84.694	Chlorocebus_sabaeus
ENSG00000205022	PABPN1L	70	57.143	ENSCPBG00000023441	PABPN1L	61	58.883	Chrysemys_picta_bellii
ENSG00000205022	PABPN1L	100	88.849	ENSCANG00000039336	PABPN1L	100	89.568	Colobus_angolensis_palliatus
ENSG00000205022	PABPN1L	100	72.760	ENSCGRG00001013211	Pabpn1l	100	72.760	Cricetulus_griseus_chok1gshd
ENSG00000205022	PABPN1L	100	72.760	ENSCGRG00000015868	Pabpn1l	100	72.760	Cricetulus_griseus_crigri
ENSG00000205022	PABPN1L	58	53.988	ENSCSEG00000001142	pabpn1l	72	52.308	Cynoglossus_semilaevis
ENSG00000205022	PABPN1L	100	60.777	ENSDNOG00000034677	PABPN1L	100	60.424	Dasypus_novemcinctus
ENSG00000205022	PABPN1L	100	70.922	ENSEASG00005000777	PABPN1L	100	69.858	Equus_asinus_asinus
ENSG00000205022	PABPN1L	100	71.631	ENSECAG00000000378	PABPN1L	100	70.567	Equus_caballus
ENSG00000205022	PABPN1L	100	60.215	ENSEEUG00000004747	PABPN1L	100	57.914	Erinaceus_europaeus
ENSG00000205022	PABPN1L	64	54.237	ENSELUG00000018385	PABPN1L	63	56.805	Esox_lucius
ENSG00000205022	PABPN1L	100	70.213	ENSFCAG00000010465	PABPN1L	100	69.039	Felis_catus
ENSG00000205022	PABPN1L	72	55.721	ENSFALG00000003319	PABPN1L	80	55.721	Ficedula_albicollis
ENSG00000205022	PABPN1L	100	69.534	ENSFDAG00000021067	PABPN1L	100	68.345	Fukomys_damarensis
ENSG00000205022	PABPN1L	58	53.988	ENSFHEG00000018295	PABPN1L	71	51.980	Fundulus_heteroclitus
ENSG00000205022	PABPN1L	54	55.333	ENSGMOG00000001475	PABPN1L	68	55.376	Gadus_morhua
ENSG00000205022	PABPN1L	54	66.667	ENSGALG00000006242	PABPN1L	85	66.667	Gallus_gallus
ENSG00000205022	PABPN1L	58	53.374	ENSGAFG00000012565	PABPN1L	71	51.244	Gambusia_affinis
ENSG00000205022	PABPN1L	58	51.497	ENSGACG00000015428	PABPN1L	72	50.732	Gasterosteus_aculeatus
ENSG00000205022	PABPN1L	65	58.889	ENSGAGG00000010613	PABPN1L	59	58.889	Gopherus_agassizii
ENSG00000205022	PABPN1L	100	94.245	ENSGGOG00000012670	PABPN1L	100	93.165	Gorilla_gorilla
ENSG00000205022	PABPN1L	72	49.000	ENSHBUG00000002388	PABPN1L	71	50.746	Haplochromis_burtoni
ENSG00000205022	PABPN1L	96	68.045	ENSHGLG00000014207	PABPN1L	100	68.539	Heterocephalus_glaber_female
ENSG00000205022	PABPN1L	96	68.045	ENSHGLG00100005230	PABPN1L	100	68.539	Heterocephalus_glaber_male
ENSG00000205022	PABPN1L	62	51.445	ENSHCOG00000004151	PABPN1L	72	50.490	Hippocampus_comes
ENSG00000205022	PABPN1L	67	52.880	ENSIPUG00000023583	PABPN1L	90	54.737	Ictalurus_punctatus
ENSG00000205022	PABPN1L	100	68.571	ENSSTOG00000020814	PABPN1L	100	67.025	Ictidomys_tridecemlineatus
ENSG00000205022	PABPN1L	100	67.857	ENSJJAG00000006433	Pabpn1l	100	66.308	Jaculus_jaculus
ENSG00000205022	PABPN1L	58	52.761	ENSLBEG00000011647	PABPN1L	69	51.980	Labrus_bergylta
ENSG00000205022	PABPN1L	70	65.306	ENSLAFG00000025902	-	78	65.306	Loxodonta_africana
ENSG00000205022	PABPN1L	100	92.806	ENSMFAG00000002924	PABPN1L	100	91.367	Macaca_fascicularis
ENSG00000205022	PABPN1L	100	92.086	ENSMMUG00000012438	PABPN1L	100	90.647	Macaca_mulatta
ENSG00000205022	PABPN1L	100	92.806	ENSMNEG00000044808	PABPN1L	100	91.367	Macaca_nemestrina
ENSG00000205022	PABPN1L	100	92.446	ENSMLEG00000032667	PABPN1L	100	91.007	Mandrillus_leucophaeus
ENSG00000205022	PABPN1L	72	50.249	ENSMZEG00005002186	PABPN1L	71	50.746	Maylandia_zebra
ENSG00000205022	PABPN1L	100	67.986	ENSMAUG00000014032	Pabpn1l	100	67.790	Mesocricetus_auratus
ENSG00000205022	PABPN1L	100	78.495	ENSMICG00000028179	PABPN1L	100	77.419	Microcebus_murinus
ENSG00000205022	PABPN1L	100	67.025	ENSMOCG00000007955	Pabpn1l	100	67.025	Microtus_ochrogaster
ENSG00000205022	PABPN1L	100	53.546	ENSMODG00000003873	-	100	52.128	Monodelphis_domestica
ENSG00000205022	PABPN1L	60	53.571	ENSMALG00000016926	PABPN1L	71	50.500	Monopterus_albus
ENSG00000205022	PABPN1L	100	66.667	MGP_CAROLIEiJ_G0031670	Pabpn1l	100	66.667	Mus_caroli
ENSG00000205022	PABPN1L	100	66.308	ENSMUSG00000069867	Pabpn1l	100	66.308	Mus_musculus
ENSG00000205022	PABPN1L	100	67.384	MGP_PahariEiJ_G0023268	Pabpn1l	100	67.025	Mus_pahari
ENSG00000205022	PABPN1L	100	65.950	MGP_SPRETEiJ_G0032788	Pabpn1l	100	65.950	Mus_spretus
ENSG00000205022	PABPN1L	96	53.571	ENSMLUG00000003228	PABPN1L	95	52.857	Myotis_lucifugus
ENSG00000205022	PABPN1L	100	70.968	ENSNGAG00000023992	Pabpn1l	100	69.534	Nannospalax_galili
ENSG00000205022	PABPN1L	54	57.333	ENSNBRG00000017078	PABPN1L	73	51.613	Neolamprologus_brichardi
ENSG00000205022	PABPN1L	100	68.817	ENSOPRG00000005597	PABPN1L	100	67.500	Ochotona_princeps
ENSG00000205022	PABPN1L	100	62.671	ENSODEG00000004649	PABPN1L	100	62.329	Octodon_degus
ENSG00000205022	PABPN1L	100	50.896	ENSOANG00000013901	PABPN1L	100	51.254	Ornithorhynchus_anatinus
ENSG00000205022	PABPN1L	70	52.475	ENSORLG00000026560	PABPN1L	75	52.475	Oryzias_latipes
ENSG00000205022	PABPN1L	70	52.475	ENSORLG00020015068	PABPN1L	75	52.475	Oryzias_latipes_hni
ENSG00000205022	PABPN1L	70	52.475	ENSORLG00015000397	PABPN1L	75	52.475	Oryzias_latipes_hsok
ENSG00000205022	PABPN1L	74	51.174	ENSOMEG00000017896	PABPN1L	54	53.234	Oryzias_melastigma
ENSG00000205022	PABPN1L	100	75.986	ENSOGAG00000000433	PABPN1L	100	75.627	Otolemur_garnettii
ENSG00000205022	PABPN1L	100	65.472	ENSOARG00000013682	PABPN1L	100	64.821	Ovis_aries
ENSG00000205022	PABPN1L	100	98.431	ENSPPAG00000028866	PABPN1L	100	98.431	Pan_paniscus
ENSG00000205022	PABPN1L	100	70.922	ENSPPRG00000015106	PABPN1L	100	69.395	Panthera_pardus
ENSG00000205022	PABPN1L	93	65.000	ENSPTIG00000015606	PABPN1L	100	63.320	Panthera_tigris_altaica
ENSG00000205022	PABPN1L	100	98.431	ENSPTRG00000031120	PABPN1L	100	98.431	Pan_troglodytes
ENSG00000205022	PABPN1L	100	92.086	ENSPANG00000026039	PABPN1L	100	90.647	Papio_anubis
ENSG00000205022	PABPN1L	69	56.633	ENSPSIG00000003404	PABPN1L	100	58.163	Pelodiscus_sinensis
ENSG00000205022	PABPN1L	100	69.176	ENSPEMG00000016624	Pabpn1l	100	68.817	Peromyscus_maniculatus_bairdii
ENSG00000205022	PABPN1L	51	63.889	ENSPCIG00000007038	-	100	63.889	Phascolarctos_cinereus
ENSG00000205022	PABPN1L	58	53.374	ENSPFOG00000007001	PABPN1L	89	44.206	Poecilia_formosa
ENSG00000205022	PABPN1L	58	53.374	ENSPLAG00000018431	PABPN1L	71	51.980	Poecilia_latipinna
ENSG00000205022	PABPN1L	58	53.374	ENSPMEG00000009108	PABPN1L	71	51.980	Poecilia_mexicana
ENSG00000205022	PABPN1L	100	94.964	ENSPPYG00000007655	PABPN1L	100	94.964	Pongo_abelii
ENSG00000205022	PABPN1L	100	73.381	ENSPCOG00000024077	PABPN1L	100	73.835	Propithecus_coquereli
ENSG00000205022	PABPN1L	100	69.149	ENSPVAG00000002716	PABPN1L	100	69.149	Pteropus_vampyrus
ENSG00000205022	PABPN1L	72	50.249	ENSPNYG00000004803	PABPN1L	71	50.746	Pundamilia_nyererei
ENSG00000205022	PABPN1L	100	69.176	ENSRNOG00000029558	Pabpn1l	100	68.817	Rattus_norvegicus
ENSG00000205022	PABPN1L	100	92.086	ENSRBIG00000030740	PABPN1L	100	90.647	Rhinopithecus_bieti
ENSG00000205022	PABPN1L	99	92.058	ENSRROG00000035483	-	99	90.253	Rhinopithecus_roxellana
ENSG00000205022	PABPN1L	100	92.086	ENSRROG00000032240	-	100	90.647	Rhinopithecus_roxellana
ENSG00000205022	PABPN1L	100	82.374	ENSSBOG00000018410	PABPN1L	100	83.094	Saimiri_boliviensis_boliviensis
ENSG00000205022	PABPN1L	100	52.349	ENSSHAG00000010001	-	100	52.013	Sarcophilus_harrisii
ENSG00000205022	PABPN1L	59	55.215	ENSSMAG00000021348	PABPN1L	72	51.942	Scophthalmus_maximus
ENSG00000205022	PABPN1L	58	53.988	ENSSDUG00000006986	PABPN1L	71	51.244	Seriola_dumerili
ENSG00000205022	PABPN1L	58	54.601	ENSSLDG00000021845	PABPN1L	71	51.741	Seriola_lalandi_dorsalis
ENSG00000205022	PABPN1L	94	50.763	ENSSARG00000005178	-	99	49.237	Sorex_araneus
ENSG00000205022	PABPN1L	69	59.067	ENSSPUG00000007031	PABPN1L	84	59.278	Sphenodon_punctatus
ENSG00000205022	PABPN1L	72	50.000	ENSSPAG00000017978	PABPN1L	71	51.741	Stegastes_partitus
ENSG00000205022	PABPN1L	100	67.376	ENSSSCG00000036367	PABPN1L	100	68.085	Sus_scrofa
ENSG00000205022	PABPN1L	58	55.152	ENSTRUG00000024725	PABPN1L	81	52.427	Takifugu_rubripes
ENSG00000205022	PABPN1L	100	69.039	ENSTTRG00000004691	PABPN1L	100	69.858	Tursiops_truncatus
ENSG00000205022	PABPN1L	59	54.706	ENSXETG00000011258	pabpn1l	96	52.315	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component