EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000205323 (Gene tree)
Gene ID
84324
Gene Symbol
SARNP
Alias
THO1|Hcc-1|CIP29
Full Name
SAP domain containing ribonucleoprotein
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
65,294 bases
Position
chr12:55,752,463-55,817,756
Accession
24432
RBP type
canonical RBP
Summary
This gene encodes a protein that is upregulated in response to various cytokines. The encoded protein may play a role in cell cycle progression. A translocation between this gene and the myeloid/lymphoid leukemia gene, resulting in expression of a chimeric protein, has been associated with acute myelomonocytic leukemia. Pseudogenes exist on chromosomes 7 and 8. Alternatively spliced transcript variants have been described. [provided by RefSeq, Feb 2009]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000337632SAPPF02037.272.5e-0911
ENSP00000447690SAPPF02037.272.7e-0911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
16738307Tho1, a novel hnRNP, and Sub2 provide alternative pathways for mRNP biogenesis in yeast THO mutants.Mol Cell Biol2006 JunJimeno S-
21203492MOS11: a new component in the mRNA export pathway.PLoS Genet2010 Dec 23Germain Hdoi: 10.1371/journal.pgen.1001250.
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000546604SARNP-2021163-ENSP00000449409210 (aa)-P82979
ENST00000336133SARNP-201926-ENSP00000337632210 (aa)-P82979
ENST00000552946SARNP-206518--- (aa)--
ENST00000552080SARNP-203726-ENSP00000447690213 (aa)-F8VZQ9
ENST00000552207SARNP-2042242--- (aa)--
ENST00000552884SARNP-205997-ENSP0000044845552 (aa)-F8VS12
Gene Model
Click here to download ENSG00000205323's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000205323rs1431181621255761184ASystolic blood pressure27841878unit increase5.004EFO_0006335
ENSG00000205323rs1431181621255761184APulse pressure27841878unit increase3.643EFO_0005763
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000205323's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000205323SARNP8178.571ENSAPOG00000005247sarnp8358.654Acanthochromis_polyacanthus
ENSG00000205323SARNP10096.667ENSAMEG00000011769SARNP10096.667Ailuropoda_melanoleuca
ENSG00000205323SARNP8178.571ENSAPEG00000016710sarnp9959.070Amphiprion_percula
ENSG00000205323SARNP8178.571ENSATEG00000024594sarnp9859.716Anabas_testudineus
ENSG00000205323SARNP9983.654ENSACAG00000015446SARNP9883.654Anolis_carolinensis
ENSG00000205323SARNP10099.048ENSANAG00000027405-10099.048Aotus_nancymaae
ENSG00000205323SARNP10084.906ENSANAG00000026331-9684.906Aotus_nancymaae
ENSG00000205323SARNP10087.619ENSANAG00000025021-10090.000Aotus_nancymaae
ENSG00000205323SARNP8178.571ENSACLG00000016479sarnp9957.870Astatotilapia_calliptera
ENSG00000205323SARNP9859.624ENSAMXG00000004834sarnp9959.624Astyanax_mexicanus
ENSG00000205323SARNP8197.619ENSBTAG00000032446-10077.465Bos_taurus
ENSG00000205323SARNP10097.143ENSBTAG00000020662SARNP10097.143Bos_taurus
ENSG00000205323SARNP10098.571ENSCJAG00000007853-10098.571Callithrix_jacchus
ENSG00000205323SARNP9596.500ENSCAFG00000023714SARNP9596.500Canis_familiaris
ENSG00000205323SARNP10084.038ENSCAFG00020026107SARNP10084.038Canis_lupus_dingo
ENSG00000205323SARNP8197.619ENSCHIG00000017443-10078.571Capra_hircus
ENSG00000205323SARNP9987.440ENSCHIG00000013335-9887.440Capra_hircus
ENSG00000205323SARNP10097.619ENSTSYG00000009225SARNP10097.619Carlito_syrichta
ENSG00000205323SARNP10097.619ENSCPOG00000011755-10097.619Cavia_porcellus
ENSG00000205323SARNP10079.310ENSCCAG00000030892-9878.095Cebus_capucinus
ENSG00000205323SARNP10087.619ENSCCAG00000004296-9586.893Cebus_capucinus
ENSG00000205323SARNP100100.000ENSCCAG00000019247-100100.000Cebus_capucinus
ENSG00000205323SARNP10090.000ENSCATG00000042076-9890.000Cercocebus_atys
ENSG00000205323SARNP100100.000ENSCATG00000045088SARNP100100.000Cercocebus_atys
ENSG00000205323SARNP10096.667ENSCLAG00000007774-10096.667Chinchilla_lanigera
ENSG00000205323SARNP100100.000ENSCSAG00000005303SARNP98100.000Chlorocebus_sabaeus
ENSG00000205323SARNP9492.929ENSCHOG00000005081SARNP10092.929Choloepus_hoffmanni
ENSG00000205323SARNP9987.081ENSCPBG00000012618SARNP9987.081Chrysemys_picta_bellii
ENSG00000205323SARNP8752.083ENSCING00000015811-9938.596Ciona_intestinalis
ENSG00000205323SARNP10099.524ENSCANG00000027918-10099.524Colobus_angolensis_palliatus
ENSG00000205323SARNP10097.143ENSCGRG00001018129-10097.143Cricetulus_griseus_chok1gshd
ENSG00000205323SARNP9871.498ENSCGRG00001022403-7869.756Cricetulus_griseus_chok1gshd
ENSG00000205323SARNP10078.571ENSCGRG00001013880-10078.571Cricetulus_griseus_chok1gshd
ENSG00000205323SARNP10097.143ENSCGRG00000015182-10097.143Cricetulus_griseus_crigri
ENSG00000205323SARNP10078.571ENSCGRG00000004298-10078.571Cricetulus_griseus_crigri
ENSG00000205323SARNP9977.512ENSCGRG00000000109-7676.098Cricetulus_griseus_crigri
ENSG00000205323SARNP8178.571ENSCVAG00000010924sarnp9957.604Cyprinodon_variegatus
ENSG00000205323SARNP9859.524ENSDARG00000059357sarnp9860.000Danio_rerio
ENSG00000205323SARNP10096.190ENSDNOG00000014518SARNP10096.190Dasypus_novemcinctus
ENSG00000205323SARNP10097.619ENSDORG00000001065-10097.619Dipodomys_ordii
ENSG00000205323SARNP8768.889ENSEBUG00000016080sarnp9852.358Eptatretus_burgeri
ENSG00000205323SARNP10097.619ENSECAG00000000708SARNP10097.619Equus_caballus
ENSG00000205323SARNP8180.952ENSELUG00000006786HCC19757.407Esox_lucius
ENSG00000205323SARNP9858.879ENSELUG00000020983sarnp9958.879Esox_lucius
ENSG00000205323SARNP10095.714ENSFCAG00000037076SARNP10095.714Felis_catus
ENSG00000205323SARNP9077.660ENSFALG00000000679SARNP7378.191Ficedula_albicollis
ENSG00000205323SARNP10098.095ENSFDAG00000007766SARNP10098.095Fukomys_damarensis
ENSG00000205323SARNP8178.571ENSFHEG00000012192sarnp9956.682Fundulus_heteroclitus
ENSG00000205323SARNP8176.190ENSGMOG00000011467sarnp9853.589Gadus_morhua
ENSG00000205323SARNP9985.167ENSGALG00000030342SARNP9985.167Gallus_gallus
ENSG00000205323SARNP8183.333ENSGAFG00000019183sarnp9957.143Gambusia_affinis
ENSG00000205323SARNP8572.727ENSGACG00000011615sarnp9956.190Gasterosteus_aculeatus
ENSG00000205323SARNP100100.000ENSGGOG00000013217SARNP100100.000Gorilla_gorilla
ENSG00000205323SARNP10085.714ENSGGOG00000041309-10086.190Gorilla_gorilla
ENSG00000205323SARNP8178.571ENSHBUG00000008761sarnp9958.333Haplochromis_burtoni
ENSG00000205323SARNP10097.619ENSHGLG00000016869SARNP10097.619Heterocephalus_glaber_female
ENSG00000205323SARNP10097.619ENSHGLG00100014657SARNP10097.619Heterocephalus_glaber_male
ENSG00000205323SARNP8376.744ENSHCOG00000015510sarnp9954.419Hippocampus_comes
ENSG00000205323SARNP8176.190ENSIPUG00000012503Sarnp9959.135Ictalurus_punctatus
ENSG00000205323SARNP10097.619ENSSTOG00000000283SARNP10097.619Ictidomys_tridecemlineatus
ENSG00000205323SARNP9281.726ENSJJAG00000011057-9181.500Jaculus_jaculus
ENSG00000205323SARNP10092.381ENSJJAG00000001070-10092.381Jaculus_jaculus
ENSG00000205323SARNP9857.798ENSKMAG00000013400sarnp9958.257Kryptolebias_marmoratus
ENSG00000205323SARNP8176.190ENSLBEG00000025038sarnp9956.422Labrus_bergylta
ENSG00000205323SARNP9456.000ENSLACG00000014810-10044.041Latimeria_chalumnae
ENSG00000205323SARNP9571.859ENSLACG00000018719SARNP8871.859Latimeria_chalumnae
ENSG00000205323SARNP9864.352ENSLOCG00000003621sarnp9864.516Lepisosteus_oculatus
ENSG00000205323SARNP10096.667ENSLAFG00000015053SARNP10096.667Loxodonta_africana
ENSG00000205323SARNP10092.857ENSMFAG00000032419-9892.857Macaca_fascicularis
ENSG00000205323SARNP100100.000ENSMFAG00000045270SARNP100100.000Macaca_fascicularis
ENSG00000205323SARNP10092.857ENSMMUG00000037731-10092.857Macaca_mulatta
ENSG00000205323SARNP100100.000ENSMMUG00000006289-100100.000Macaca_mulatta
ENSG00000205323SARNP100100.000ENSMNEG00000044633-100100.000Macaca_nemestrina
ENSG00000205323SARNP10081.429ENSMNEG00000030688-9877.830Macaca_nemestrina
ENSG00000205323SARNP9991.827ENSMNEG00000041520-9792.118Macaca_nemestrina
ENSG00000205323SARNP81100.000ENSMLEG00000038545-8697.857Mandrillus_leucophaeus
ENSG00000205323SARNP10089.524ENSMLEG00000037790-9889.524Mandrillus_leucophaeus
ENSG00000205323SARNP8183.333ENSMAMG00000005942sarnp9957.075Mastacembelus_armatus
ENSG00000205323SARNP8178.571ENSMZEG00005023533sarnp9958.333Maylandia_zebra
ENSG00000205323SARNP9985.167ENSMGAG00000001807SARNP9985.167Meleagris_gallopavo
ENSG00000205323SARNP10095.714ENSMAUG00000005256-10095.714Mesocricetus_auratus
ENSG00000205323SARNP10097.619ENSMICG00000010902-10097.619Microcebus_murinus
ENSG00000205323SARNP10097.143ENSMOCG00000006502-10097.143Microtus_ochrogaster
ENSG00000205323SARNP8379.070ENSMMOG00000013258sarnp9953.810Mola_mola
ENSG00000205323SARNP7973.171ENSMALG00000009106sarnp8655.500Monopterus_albus
ENSG00000205323SARNP10095.714MGP_CAROLIEiJ_G0015958-10095.714Mus_caroli
ENSG00000205323SARNP10095.714ENSMUSG00000078427Sarnp10095.714Mus_musculus
ENSG00000205323SARNP9495.431MGP_PahariEiJ_G0031126-10095.431Mus_pahari
ENSG00000205323SARNP10095.714MGP_SPRETEiJ_G0016783-10095.714Mus_spretus
ENSG00000205323SARNP10097.619ENSMPUG00000000885SARNP10097.619Mustela_putorius_furo
ENSG00000205323SARNP8092.216ENSMLUG00000003565SARNP10092.216Myotis_lucifugus
ENSG00000205323SARNP10095.714ENSNGAG00000010245-10095.714Nannospalax_galili
ENSG00000205323SARNP9289.796ENSNLEG00000011100-10089.796Nomascus_leucogenys
ENSG00000205323SARNP8795.628ENSNLEG00000017599-10095.109Nomascus_leucogenys
ENSG00000205323SARNP10085.238ENSMEUG00000014879SARNP10085.238Notamacropus_eugenii
ENSG00000205323SARNP8195.238ENSOPRG00000007733SARNP10074.286Ochotona_princeps
ENSG00000205323SARNP10078.095ENSODEG00000012047-10080.000Octodon_degus
ENSG00000205323SARNP10097.143ENSODEG00000004608-10097.143Octodon_degus
ENSG00000205323SARNP8178.571ENSONIG00000016523sarnp9958.796Oreochromis_niloticus
ENSG00000205323SARNP9585.714ENSOANG00000002882SARNP10085.714Ornithorhynchus_anatinus
ENSG00000205323SARNP9894.203ENSOCUG00000010117SARNP9994.203Oryctolagus_cuniculus
ENSG00000205323SARNP8180.952ENSORLG00000029565sarnp8759.330Oryzias_latipes
ENSG00000205323SARNP8180.952ENSORLG00015021649sarnp8759.330Oryzias_latipes_hsok
ENSG00000205323SARNP8180.952ENSOMEG00000014699sarnp9856.364Oryzias_melastigma
ENSG00000205323SARNP7594.904ENSOGAG00000001693SARNP9494.904Otolemur_garnettii
ENSG00000205323SARNP10097.143ENSOARG00000011218SARNP10097.143Ovis_aries
ENSG00000205323SARNP100100.000ENSPPAG00000039513SARNP100100.000Pan_paniscus
ENSG00000205323SARNP10081.905ENSPPAG00000042587-9882.381Pan_paniscus
ENSG00000205323SARNP10095.714ENSPPRG00000020704SARNP10095.714Panthera_pardus
ENSG00000205323SARNP100100.000ENSPTRG00000029747SARNP100100.000Pan_troglodytes
ENSG00000205323SARNP10081.905ENSPTRG00000046696-9882.381Pan_troglodytes
ENSG00000205323SARNP10090.952ENSPANG00000006001-9890.952Papio_anubis
ENSG00000205323SARNP10099.524ENSPANG00000013149-10099.524Papio_anubis
ENSG00000205323SARNP8386.047ENSPKIG00000002212sarnp9960.369Paramormyrops_kingsleyae
ENSG00000205323SARNP9884.878ENSPSIG00000002998SARNP9884.878Pelodiscus_sinensis
ENSG00000205323SARNP10095.714ENSPEMG00000000923-10095.714Peromyscus_maniculatus_bairdii
ENSG00000205323SARNP9852.093ENSPMAG00000009808sarnp9553.023Petromyzon_marinus
ENSG00000205323SARNP9593.970ENSPCIG00000024663SARNP9993.970Phascolarctos_cinereus
ENSG00000205323SARNP7582.051ENSPFOG00000013517sarnp9957.798Poecilia_formosa
ENSG00000205323SARNP7582.051ENSPLAG00000017096sarnp9958.525Poecilia_latipinna
ENSG00000205323SARNP7582.051ENSPMEG00000014306sarnp9958.525Poecilia_mexicana
ENSG00000205323SARNP9950.952ENSPREG00000019598sarnp8550.476Poecilia_reticulata
ENSG00000205323SARNP100100.000ENSPPYG00000004630SARNP100100.000Pongo_abelii
ENSG00000205323SARNP9858.852ENSPNAG00000000975sarnp9958.852Pygocentrus_nattereri
ENSG00000205323SARNP10096.667ENSRNOG00000030520Sarnp10096.667Rattus_norvegicus
ENSG00000205323SARNP10089.202ENSRBIG00000026928-9889.671Rhinopithecus_bieti
ENSG00000205323SARNP9895.694ENSRBIG00000019503-10095.694Rhinopithecus_bieti
ENSG00000205323SARNP10099.524ENSRBIG00000039295-10099.524Rhinopithecus_bieti
ENSG00000205323SARNP10075.238ENSRBIG00000037388-9876.190Rhinopithecus_bieti
ENSG00000205323SARNP10089.202ENSRROG00000044575-9889.671Rhinopithecus_roxellana
ENSG00000205323SARNP10099.524ENSRROG00000035177-10099.524Rhinopithecus_roxellana
ENSG00000205323SARNP8190.476ENSSBOG00000025173-7189.130Saimiri_boliviensis_boliviensis
ENSG00000205323SARNP100100.000ENSSBOG00000035337-100100.000Saimiri_boliviensis_boliviensis
ENSG00000205323SARNP10082.381ENSSBOG00000022787-9782.381Saimiri_boliviensis_boliviensis
ENSG00000205323SARNP10096.190ENSSBOG00000028635-9896.190Saimiri_boliviensis_boliviensis
ENSG00000205323SARNP10094.286ENSSHAG00000008865SARNP10094.286Sarcophilus_harrisii
ENSG00000205323SARNP8383.721ENSSFOG00015020709sarnp9962.621Scleropages_formosus
ENSG00000205323SARNP8178.571ENSSMAG00000018587sarnp9956.190Scophthalmus_maximus
ENSG00000205323SARNP8178.571ENSSDUG00000005484sarnp9960.000Seriola_dumerili
ENSG00000205323SARNP8178.571ENSSLDG00000003775sarnp9960.000Seriola_lalandi_dorsalis
ENSG00000205323SARNP8197.619ENSSARG00000004858SARNP10069.524Sorex_araneus
ENSG00000205323SARNP9565.347ENSSPUG00000015135SARNP9665.347Sphenodon_punctatus
ENSG00000205323SARNP10097.619ENSSSCG00000000364SARNP10097.619Sus_scrofa
ENSG00000205323SARNP8190.476ENSTGUG00000016126SARNP10076.650Taeniopygia_guttata
ENSG00000205323SARNP9955.189ENSTRUG00000009497-9957.143Takifugu_rubripes
ENSG00000205323SARNP8381.395ENSTNIG00000012432sarnp9956.164Tetraodon_nigroviridis
ENSG00000205323SARNP10091.429ENSTTRG00000009735SARNP10091.429Tursiops_truncatus
ENSG00000205323SARNP7889.697ENSUAMG00000015093-8689.697Ursus_americanus
ENSG00000205323SARNP9496.954ENSVPAG00000009515SARNP10096.954Vicugna_pacos
ENSG00000205323SARNP10096.667ENSVVUG00000022779SARNP10096.667Vulpes_vulpes
ENSG00000205323SARNP9874.757ENSXETG00000024657sarnp9874.757Xenopus_tropicalis
ENSG00000205323SARNP8183.333ENSXMAG00000009356sarnp9957.604Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000346transcription export complex20844015.IDAComponent
GO:0003677DNA binding-IEAFunction
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding14667819.16189514.18559666.25416956.IPIFunction
GO:0005634nucleus11356193.NASComponent
GO:0005654nucleoplasm-TASComponent
GO:0006405RNA export from nucleus-TASProcess
GO:0006406mRNA export from nucleus20844015.IDAProcess
GO:0006406mRNA export from nucleus-TASProcess
GO:0006417regulation of translation-IEAProcess
GO:0016607nuclear speck20844015.IDAComponent
GO:0031124mRNA 3'-end processing-TASProcess
GO:0036464cytoplasmic ribonucleoprotein granule-IDAComponent

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