EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000213339 (Gene tree)
Gene ID
81890
Gene Symbol
QTRT1
Alias
TGT
Full Name
queuine tRNA-ribosyltransferase catalytic subunit 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
12,008 bases
Position
chr19:10,701,430-10,713,437
Accession
23797
RBP type
canonical RBP
Summary
This gene encodes the catalytic subunit of tRNA-guanine transglycosylase. tRNA-guanine transglycosylase is a heterodimeric enzyme complex that plays a critical role in tRNA modification by synthesizing the 7-deazaguanosine queuosine, which is found in tRNAs that code for asparagine, aspartic acid, histidine and tyrosine. A pseudogene of this gene is located on the long arm of chromosome X. [provided by RefSeq, Feb 2012]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000250237TGTPF01702.184.9e-14611
ENSP00000468811TGTPF01702.184.4e-5411
ENSP00000465974TGTPF01702.182.6e-3911
ENSP00000467394TGTPF01702.181.6e-2611
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
16407303The RNA-binding PUA domain of archaeal tRNA-guanine transglycosylase is not required for archaeosine formation.J Biol Chem2006 Mar 17Sabina J-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000592376QTRT1-211500-ENSP00000465974136 (aa)-K7EL95
ENST00000589488QTRT1-2071571--- (aa)--
ENST00000587861QTRT1-2062034--- (aa)--
ENST00000592254QTRT1-210539-ENSP00000468811180 (aa)-K7ESP6
ENST00000587500QTRT1-204540--- (aa)--
ENST00000587599QTRT1-205994-ENSP00000464990203 (aa)-K7EJ21
ENST00000591643QTRT1-209370-ENSP00000467394124 (aa)-K7EPI1
ENST00000250237QTRT1-2011317-ENSP00000250237403 (aa)-Q9BXR0
ENST00000592531QTRT1-212370--- (aa)--
ENST00000585885QTRT1-203875--- (aa)--
ENST00000590705QTRT1-208846--- (aa)--
ENST00000421333QTRT1-2021502-ENSP00000389126225 (aa)-Q9BXR0
Gene Model
Click here to download ENSG00000213339's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000213339Plaque, Atherosclerotic3.6850000E-00621909108
ENSG00000213339Psoriasis2E-625903422
ENSG00000213339Psoriasis8E-726626624
ENSG00000213339Psoriasis1E-1025574825
ENSG00000213339Psoriasis3E-725574825
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000213339rs8920851910707416APsoriasis vulgaris26626624NR1.114EFO_1001494
ENSG00000213339rs8920851910707416APsoriasis25574825[1.103-1.245]1.172EFO_0000676
ENSG00000213339rs98078411910706980?Inflammatory skin disease25574825EFO_0000676
ENSG00000213339rs8920851910707416APsoriasis231435941.17EFO_0000676
ENSG00000213339rs110857441910709291?Waist-hip ratio30595370EFO_0004343
ENSG00000213339rs110857441910709291TLung function (FVC)30804560[0.0064-0.0158] unit decrease0.0111EFO_0004312
ENSG00000213339rs110857441910709291TFEV130804560[0.011-0.02] unit decrease0.0153EFO_0004314
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000213339's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000213339QTRT15933.065ENSG00000100416TRMU5633.065
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000213339QTRT19774.425ENSAPOG00000003822qtrt19474.425Acanthochromis_polyacanthus
ENSG00000213339QTRT19990.299ENSAMEG00000011134QTRT110089.877Ailuropoda_melanoleuca
ENSG00000213339QTRT19775.703ENSACIG00000017448qtrt19475.703Amphilophus_citrinellus
ENSG00000213339QTRT19773.657ENSAOCG00000004036qtrt19873.657Amphiprion_ocellaris
ENSG00000213339QTRT19774.425ENSAPEG00000006473qtrt19474.425Amphiprion_percula
ENSG00000213339QTRT19775.448ENSATEG00000023885qtrt19475.448Anabas_testudineus
ENSG00000213339QTRT19678.238ENSACAG00000015590QTRT19576.923Anolis_carolinensis
ENSG00000213339QTRT19498.158ENSANAG00000024566QTRT19498.158Aotus_nancymaae
ENSG00000213339QTRT19774.936ENSAMXG00000030233qtrt19474.936Astyanax_mexicanus
ENSG00000213339QTRT110093.300ENSBTAG00000037941QTRT110093.300Bos_taurus
ENSG00000213339QTRT19352.956WBGene00006566tgt-19752.956Caenorhabditis_elegans
ENSG00000213339QTRT110094.928ENSCJAG00000006506QTRT110089.330Callithrix_jacchus
ENSG00000213339QTRT19994.776ENSCAFG00000017671QTRT19994.776Canis_familiaris
ENSG00000213339QTRT19994.776ENSCAFG00020024495QTRT19994.776Canis_lupus_dingo
ENSG00000213339QTRT110093.300ENSCHIG00000014137QTRT110093.300Capra_hircus
ENSG00000213339QTRT110095.533ENSTSYG00000028413QTRT110095.533Carlito_syrichta
ENSG00000213339QTRT19984.672ENSCAPG00000006660QTRT110089.644Cavia_aperea
ENSG00000213339QTRT19990.773ENSCPOG00000025300QTRT19990.773Cavia_porcellus
ENSG00000213339QTRT110098.759ENSCCAG00000021651QTRT110098.759Cebus_capucinus
ENSG00000213339QTRT110098.263ENSCATG00000034798QTRT110098.263Cercocebus_atys
ENSG00000213339QTRT19989.750ENSCLAG00000009859QTRT19989.750Chinchilla_lanigera
ENSG00000213339QTRT110096.377ENSCSAG00000006976QTRT110085.891Chlorocebus_sabaeus
ENSG00000213339QTRT19676.425ENSCPBG00000010229QTRT19776.425Chrysemys_picta_bellii
ENSG00000213339QTRT19660.668ENSCSAVG00000008757-9960.668Ciona_savignyi
ENSG00000213339QTRT110098.759ENSCANG00000037554QTRT110098.759Colobus_angolensis_palliatus
ENSG00000213339QTRT19987.781ENSCGRG00001001152Qtrt19587.781Cricetulus_griseus_chok1gshd
ENSG00000213339QTRT19981.022ENSCGRG00000017428Qtrt18485.965Cricetulus_griseus_crigri
ENSG00000213339QTRT19776.726ENSCSEG00000009576qtrt19476.726Cynoglossus_semilaevis
ENSG00000213339QTRT19873.552ENSCVAG00000023381qtrt19573.552Cyprinodon_variegatus
ENSG00000213339QTRT19972.682ENSDARG00000043105qtrt19972.682Danio_rerio
ENSG00000213339QTRT19762.712ENSDNOG00000042677QTRT19855.949Dasypus_novemcinctus
ENSG00000213339QTRT19889.873ENSDORG00000015233Qtrt19889.873Dipodomys_ordii
ENSG00000213339QTRT19758.974FBgn0031321Tgt9158.974Drosophila_melanogaster
ENSG00000213339QTRT19956.911ENSEBUG00000005878-9760.473Eptatretus_burgeri
ENSG00000213339QTRT19991.241ENSEASG00005008453QTRT110087.097Equus_asinus_asinus
ENSG00000213339QTRT110092.308ENSECAG00000014773QTRT110092.308Equus_caballus
ENSG00000213339QTRT19775.385ENSELUG00000022711qtrt19475.385Esox_lucius
ENSG00000213339QTRT19991.241ENSFCAG00000026012QTRT19990.050Felis_catus
ENSG00000213339QTRT19986.861ENSFDAG00000013070QTRT19982.544Fukomys_damarensis
ENSG00000213339QTRT19775.578ENSFHEG00000014847QTRT19375.578Fundulus_heteroclitus
ENSG00000213339QTRT19973.500ENSGMOG00000008173qtrt19873.500Gadus_morhua
ENSG00000213339QTRT19973.188ENSGALG00000050235-9673.454Gallus_gallus
ENSG00000213339QTRT19775.321ENSGAFG00000012288qtrt19877.410Gambusia_affinis
ENSG00000213339QTRT19775.192ENSGACG00000010327qtrt19775.192Gasterosteus_aculeatus
ENSG00000213339QTRT19969.343ENSGAGG00000016930QTRT19978.711Gopherus_agassizii
ENSG00000213339QTRT110098.551ENSGGOG00000023774QTRT1100100.000Gorilla_gorilla
ENSG00000213339QTRT19775.641ENSHBUG00000003718qtrt19475.641Haplochromis_burtoni
ENSG00000213339QTRT19991.272ENSHGLG00000018553QTRT19991.272Heterocephalus_glaber_female
ENSG00000213339QTRT19991.272ENSHGLG00100016500QTRT19991.272Heterocephalus_glaber_male
ENSG00000213339QTRT19775.959ENSHCOG00000015434qtrt19475.959Hippocampus_comes
ENSG00000213339QTRT19974.564ENSIPUG00000008090qtrt19674.564Ictalurus_punctatus
ENSG00000213339QTRT110093.548ENSSTOG00000020466QTRT110093.548Ictidomys_tridecemlineatus
ENSG00000213339QTRT19989.303ENSJJAG00000013307Qtrt19989.303Jaculus_jaculus
ENSG00000213339QTRT19774.936ENSKMAG00000013451qtrt19474.936Kryptolebias_marmoratus
ENSG00000213339QTRT19974.138ENSLBEG00000023822qtrt19874.138Labrus_bergylta
ENSG00000213339QTRT19967.883ENSLACG00000016769QTRT19374.603Latimeria_chalumnae
ENSG00000213339QTRT19977.136ENSLOCG00000008949qtrt19477.136Lepisosteus_oculatus
ENSG00000213339QTRT19994.279ENSLAFG00000020858QTRT110094.279Loxodonta_africana
ENSG00000213339QTRT110096.377ENSMFAG00000044529QTRT110086.849Macaca_fascicularis
ENSG00000213339QTRT110097.767ENSMMUG00000028882QTRT110097.767Macaca_mulatta
ENSG00000213339QTRT110096.377ENSMNEG00000031690QTRT110098.404Macaca_nemestrina
ENSG00000213339QTRT110098.263ENSMLEG00000023215QTRT110098.263Mandrillus_leucophaeus
ENSG00000213339QTRT19775.448ENSMAMG00000020576qtrt19275.448Mastacembelus_armatus
ENSG00000213339QTRT19775.641ENSMZEG00005013683qtrt19475.641Maylandia_zebra
ENSG00000213339QTRT19988.060ENSMAUG00000020794Qtrt19988.060Mesocricetus_auratus
ENSG00000213339QTRT19994.527ENSMICG00000029300QTRT19994.527Microcebus_murinus
ENSG00000213339QTRT19987.811ENSMOCG00000019584Qtrt19987.811Microtus_ochrogaster
ENSG00000213339QTRT19775.703ENSMMOG00000011409qtrt19475.703Mola_mola
ENSG00000213339QTRT19980.846ENSMODG00000005954QTRT19980.846Monodelphis_domestica
ENSG00000213339QTRT19873.300ENSMALG00000001794qtrt19573.300Monopterus_albus
ENSG00000213339QTRT19986.816MGP_CAROLIEiJ_G0031872Qtrt19986.816Mus_caroli
ENSG00000213339QTRT19987.313ENSMUSG00000002825Qtrt19987.313Mus_musculus
ENSG00000213339QTRT19986.567MGP_PahariEiJ_G0014738Qtrt19986.567Mus_pahari
ENSG00000213339QTRT19987.562MGP_SPRETEiJ_G0032996Qtrt19987.562Mus_spretus
ENSG00000213339QTRT19994.279ENSMPUG00000006190QTRT19994.279Mustela_putorius_furo
ENSG00000213339QTRT19991.791ENSMLUG00000030697QTRT19991.791Myotis_lucifugus
ENSG00000213339QTRT19989.277ENSNGAG00000012294Qtrt19989.277Nannospalax_galili
ENSG00000213339QTRT19775.897ENSNBRG00000020436qtrt19875.897Neolamprologus_brichardi
ENSG00000213339QTRT110099.256ENSNLEG00000012343QTRT110099.256Nomascus_leucogenys
ENSG00000213339QTRT19979.562ENSMEUG00000009572QTRT19980.798Notamacropus_eugenii
ENSG00000213339QTRT19990.773ENSODEG00000015894QTRT19990.773Octodon_degus
ENSG00000213339QTRT19775.385ENSONIG00000001945qtrt19575.385Oreochromis_niloticus
ENSG00000213339QTRT15764.557ENSOANG00000028394-7865.823Ornithorhynchus_anatinus
ENSG00000213339QTRT19987.113ENSOCUG00000021082QTRT110080.147Oryctolagus_cuniculus
ENSG00000213339QTRT19874.811ENSORLG00000006865qtrt19974.811Oryzias_latipes
ENSG00000213339QTRT19874.811ENSORLG00020001518qtrt19574.811Oryzias_latipes_hni
ENSG00000213339QTRT19874.559ENSORLG00015012716qtrt19574.559Oryzias_latipes_hsok
ENSG00000213339QTRT19774.425ENSOMEG00000006488qtrt19474.425Oryzias_melastigma
ENSG00000213339QTRT19994.776ENSOGAG00000029328QTRT19994.776Otolemur_garnettii
ENSG00000213339QTRT110084.236ENSOARG00000017083QTRT110084.236Ovis_aries
ENSG00000213339QTRT1100100.000ENSPPAG00000030556QTRT1100100.000Pan_paniscus
ENSG00000213339QTRT19985.821ENSPPRG00000022719QTRT19986.667Panthera_pardus
ENSG00000213339QTRT19786.842ENSPTIG00000021522QTRT19979.851Panthera_tigris_altaica
ENSG00000213339QTRT1100100.000ENSPTRG00000010481QTRT1100100.000Pan_troglodytes
ENSG00000213339QTRT110098.263ENSPANG00000014330QTRT110098.263Papio_anubis
ENSG00000213339QTRT19974.378ENSPKIG00000013247qtrt19474.378Paramormyrops_kingsleyae
ENSG00000213339QTRT19964.228ENSPSIG00000004466QTRT19965.766Pelodiscus_sinensis
ENSG00000213339QTRT19775.448ENSPMGG00000010189qtrt19475.448Periophthalmus_magnuspinnatus
ENSG00000213339QTRT19987.562ENSPEMG00000009897Qtrt19987.562Peromyscus_maniculatus_bairdii
ENSG00000213339QTRT19974.453ENSPMAG00000008804QTRT19974.065Petromyzon_marinus
ENSG00000213339QTRT19683.420ENSPCIG00000017110QTRT19481.796Phascolarctos_cinereus
ENSG00000213339QTRT19775.835ENSPFOG00000004094qtrt19275.835Poecilia_formosa
ENSG00000213339QTRT19775.835ENSPLAG00000019324qtrt19275.835Poecilia_latipinna
ENSG00000213339QTRT19776.093ENSPMEG00000020568qtrt19276.093Poecilia_mexicana
ENSG00000213339QTRT19775.835ENSPREG00000004387qtrt19275.835Poecilia_reticulata
ENSG00000213339QTRT110097.826ENSPPYG00000009561QTRT110081.390Pongo_abelii
ENSG00000213339QTRT19986.131ENSPCAG00000000765QTRT18390.873Procavia_capensis
ENSG00000213339QTRT19995.025ENSPCOG00000017773QTRT19995.025Propithecus_coquereli
ENSG00000213339QTRT19991.791ENSPVAG00000012154QTRT19991.791Pteropus_vampyrus
ENSG00000213339QTRT19775.897ENSPNYG00000008467qtrt19875.897Pundamilia_nyererei
ENSG00000213339QTRT19973.183ENSPNAG00000009654qtrt19973.183Pygocentrus_nattereri
ENSG00000213339QTRT19987.811ENSRNOG00000007158Qtrt19687.811Rattus_norvegicus
ENSG00000213339QTRT110098.759ENSRBIG00000036634QTRT19898.759Rhinopithecus_bieti
ENSG00000213339QTRT110098.759ENSRROG00000036578QTRT110098.759Rhinopithecus_roxellana
ENSG00000213339QTRT110097.101ENSSBOG00000006787QTRT110098.667Saimiri_boliviensis_boliviensis
ENSG00000213339QTRT19978.832ENSSHAG00000002774QTRT19878.500Sarcophilus_harrisii
ENSG00000213339QTRT19973.566ENSSFOG00015023951qtrt19773.566Scleropages_formosus
ENSG00000213339QTRT19774.425ENSSMAG00000002142qtrt19374.425Scophthalmus_maximus
ENSG00000213339QTRT19774.936ENSSDUG00000015001qtrt19074.936Seriola_dumerili
ENSG00000213339QTRT19774.936ENSSLDG00000003232qtrt19474.936Seriola_lalandi_dorsalis
ENSG00000213339QTRT19966.667ENSSPUG00000004328QTRT18771.182Sphenodon_punctatus
ENSG00000213339QTRT19674.611ENSSPAG00000001536qtrt19274.611Stegastes_partitus
ENSG00000213339QTRT19993.532ENSSSCG00000013637QTRT19993.532Sus_scrofa
ENSG00000213339QTRT19773.913ENSTRUG00000013412qtrt19473.913Takifugu_rubripes
ENSG00000213339QTRT19774.680ENSTNIG00000010451qtrt19474.680Tetraodon_nigroviridis
ENSG00000213339QTRT110093.052ENSTTRG00000016634QTRT110093.052Tursiops_truncatus
ENSG00000213339QTRT19994.030ENSUAMG00000019646QTRT19994.030Ursus_americanus
ENSG00000213339QTRT19978.856ENSUMAG00000025046QTRT19978.856Ursus_maritimus
ENSG00000213339QTRT19973.171ENSVPAG00000009091QTRT110094.397Vicugna_pacos
ENSG00000213339QTRT19994.776ENSVVUG00000017540QTRT19995.908Vulpes_vulpes
ENSG00000213339QTRT19960.432ENSXETG00000002264qtrt19967.725Xenopus_tropicalis
ENSG00000213339QTRT19967.153ENSXCOG00000010920qtrt19776.636Xiphophorus_couchianus
ENSG00000213339QTRT19775.641ENSXMAG00000025867qtrt19375.641Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005634nucleus-IEAComponent
GO:0005741mitochondrial outer membrane-TASComponent
GO:0006400tRNA modification11255023.TASProcess
GO:0008479queuine tRNA-ribosyltransferase activity21873635.IBAFunction
GO:0008479queuine tRNA-ribosyltransferase activity20354154.IDAFunction
GO:0008479queuine tRNA-ribosyltransferase activity11255023.TASFunction
GO:0032991protein-containing complex20354154.IPIComponent
GO:0042803protein homodimerization activity20354154.IDAFunction
GO:0046872metal ion binding-IEAFunction
GO:0046982protein heterodimerization activity20354154.IDAFunction
GO:0101030tRNA-guanine transglycosylation20354154.IDAProcess
GO:0101030tRNA-guanine transglycosylation11255023.NASProcess

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