EuRBPDB

Description

RBDs

RBPome

Literatures

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000213741 (Gene tree)
Gene ID: 6235
Gene Symbol: RPS29
Alias: S29|uS14
Full Name: ribosomal protein S29
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Minus strand
Length: 28,181 bases
Position: chr14:49,570,984-49,599,164
Accession: 10419
RBP type: canonical RBP
Summary: Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit and a member of the S14P family of ribosomal proteins. The protein, which contains a C2-C2 zinc finger-like domain that can bind to zinc, can enhance the tumor suppressor activity of Ras-related protein 1A (KREV1). It is located in the cytoplasm. Variable expression of this gene in colorectal cancers compared to adjacent normal tissues has been observed, although no correlation between the level of expression and the severity of the disease has been found. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2013]

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000245458	Ribosomal_S14	PF00253.21	1.4e-14	1	1
ENSP00000495033	Ribosomal_S14	PF00253.21	1.4e-14	1	1
ENSP00000379339	Ribosomal_S14	PF00253.21	4e-14	1	1
ENSP00000495688	Ribosomal_S14	PF00253.21	6.1e-14	1	1
ENSP00000496485	Ribosomal_S14	PF00253.21	1.1e-13	1	1
ENSP00000478117	Ribosomal_S14	PF00253.21	1.5e-09	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity

PID	Title	Article	Time	Author	Doi
30854058	Identification of B-cell translocation gene 1-controlled gene networks in diffuse large B-cell lymphoma: A study based on bioinformatics analysis.	Oncol Lett	2019 Mar	Yan W	doi: 10.3892/ol.2019.9900

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000539688	RPS29-203	1690	-	-	- (aa)	-	-
ENST00000557367	RPS29-207	499	-	-	- (aa)	-	-
ENST00000557111	RPS29-206	488	-	ENSP00000478117	53 (aa)	-	A0A087WTT6
ENST00000556230	RPS29-205	677	-	ENSP00000495033	56 (aa)	-	P62273
ENST00000245458	RPS29-201	296	-	ENSP00000245458	56 (aa)	-	P62273
ENST00000554075	RPS29-204	844	-	ENSP00000496485	87 (aa)	-	A0A2R8Y851
ENST00000557519	RPS29-208	333	-	ENSP00000495688	48 (aa)	-	A0A2R8Y6P7
ENST00000396020	RPS29-202	7062	-	ENSP00000379339	67 (aa)	-	P62273

Gene Model

Click here to download ENSG00000213741's gene model file

Pathways

Pathway ID	Pathway Name	Source
hsa03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000213741's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000213741	RPS29	100	98.214	ENSAPOG00000019676	RPS29	55	98.214	Acanthochromis_polyacanthus
ENSG00000213741	RPS29	98	100.000	ENSAMEG00000009528	-	100	100.000	Ailuropoda_melanoleuca
ENSG00000213741	RPS29	100	98.214	ENSAOCG00000024052	RPS29	55	98.214	Amphiprion_ocellaris
ENSG00000213741	RPS29	98	97.872	ENSATEG00000000779	RPS29	92	98.182	Anabas_testudineus
ENSG00000213741	RPS29	100	98.214	ENSANAG00000016047	-	100	98.214	Aotus_nancymaae
ENSG00000213741	RPS29	100	98.214	ENSBTAG00000025666	RPS29	100	98.214	Bos_taurus
ENSG00000213741	RPS29	100	94.643	ENSCAFG00020026848	-	100	94.643	Canis_lupus_dingo
ENSG00000213741	RPS29	100	92.857	ENSCAFG00020000128	-	100	92.857	Canis_lupus_dingo
ENSG00000213741	RPS29	98	100.000	ENSCHIG00000016738	RPS29	86	100.000	Capra_hircus
ENSG00000213741	RPS29	100	94.643	ENSCHIG00000008410	-	100	94.643	Capra_hircus
ENSG00000213741	RPS29	100	100.000	ENSCCAG00000038080	RPS29	100	100.000	Cebus_capucinus
ENSG00000213741	RPS29	100	100.000	ENSCATG00000031196	RPS29	100	100.000	Cercocebus_atys
ENSG00000213741	RPS29	98	100.000	ENSCLAG00000010995	RPS29	100	100.000	Chinchilla_lanigera
ENSG00000213741	RPS29	100	97.917	ENSCHOG00000013573	RPS29	100	98.214	Choloepus_hoffmanni
ENSG00000213741	RPS29	98	100.000	ENSCHOG00000010797	-	100	100.000	Choloepus_hoffmanni
ENSG00000213741	RPS29	100	100.000	ENSCANG00000028990	RPS29	100	100.000	Colobus_angolensis_palliatus
ENSG00000213741	RPS29	100	91.071	ENSCGRG00001011398	-	100	91.071	Cricetulus_griseus_chok1gshd
ENSG00000213741	RPS29	100	91.071	ENSCGRG00001015495	-	100	91.071	Cricetulus_griseus_chok1gshd
ENSG00000213741	RPS29	100	89.286	ENSCGRG00001008847	-	100	89.286	Cricetulus_griseus_chok1gshd
ENSG00000213741	RPS29	100	91.071	ENSCGRG00000019676	-	100	91.071	Cricetulus_griseus_crigri
ENSG00000213741	RPS29	100	91.071	ENSCGRG00000019296	-	100	91.071	Cricetulus_griseus_crigri
ENSG00000213741	RPS29	100	89.286	ENSCGRG00000018452	-	100	89.286	Cricetulus_griseus_crigri
ENSG00000213741	RPS29	98	97.872	ENSCVAG00000004609	RPS29	95	94.737	Cyprinodon_variegatus
ENSG00000213741	RPS29	98	100.000	ENSETEG00000016841	RPS29	100	100.000	Echinops_telfairi
ENSG00000213741	RPS29	98	100.000	ENSEEUG00000010022	RPS29	100	100.000	Erinaceus_europaeus
ENSG00000213741	RPS29	100	96.429	ENSELUG00000011749	RPS29	100	96.429	Esox_lucius
ENSG00000213741	RPS29	98	100.000	ENSFDAG00000007231	RPS29	100	100.000	Fukomys_damarensis
ENSG00000213741	RPS29	98	97.872	ENSFHEG00000018419	RPS29	83	98.182	Fundulus_heteroclitus
ENSG00000213741	RPS29	98	95.745	ENSGMOG00000010799	RPS29	100	96.364	Gadus_morhua
ENSG00000213741	RPS29	98	97.872	ENSGAFG00000006809	RPS29	86	88.710	Gambusia_affinis
ENSG00000213741	RPS29	100	100.000	ENSGGOG00000007077	-	100	100.000	Gorilla_gorilla
ENSG00000213741	RPS29	98	100.000	ENSHGLG00000014686	RPS29	100	100.000	Heterocephalus_glaber_female
ENSG00000213741	RPS29	100	87.500	ENSHGLG00000020187	-	92	87.500	Heterocephalus_glaber_female
ENSG00000213741	RPS29	98	100.000	ENSHGLG00100005696	RPS29	86	98.246	Heterocephalus_glaber_male
ENSG00000213741	RPS29	100	98.214	ENSHCOG00000014532	rps29	100	98.214	Hippocampus_comes
ENSG00000213741	RPS29	100	98.214	ENSIPUG00000022139	rps29	100	98.214	Ictalurus_punctatus
ENSG00000213741	RPS29	98	100.000	ENSSTOG00000006936	RPS29	100	100.000	Ictidomys_tridecemlineatus
ENSG00000213741	RPS29	100	89.286	ENSSTOG00000032771	-	100	89.286	Ictidomys_tridecemlineatus
ENSG00000213741	RPS29	98	100.000	ENSJJAG00000021494	-	100	100.000	Jaculus_jaculus
ENSG00000213741	RPS29	100	92.857	ENSJJAG00000014692	-	100	92.857	Jaculus_jaculus
ENSG00000213741	RPS29	100	98.214	ENSKMAG00000019695	RPS29	100	98.214	Kryptolebias_marmoratus
ENSG00000213741	RPS29	98	97.872	ENSLBEG00000024520	RPS29	73	98.148	Labrus_bergylta
ENSG00000213741	RPS29	100	98.214	ENSLACG00000015942	RPS29	100	98.214	Latimeria_chalumnae
ENSG00000213741	RPS29	98	97.872	ENSLOCG00000011385	RPS29	100	98.182	Lepisosteus_oculatus
ENSG00000213741	RPS29	100	100.000	ENSMFAG00000045980	RPS29	100	100.000	Macaca_fascicularis
ENSG00000213741	RPS29	100	96.429	ENSMFAG00000011609	-	100	96.429	Macaca_fascicularis
ENSG00000213741	RPS29	100	94.643	ENSMMUG00000038876	-	100	94.643	Macaca_mulatta
ENSG00000213741	RPS29	100	100.000	ENSMMUG00000029367	RPS29	100	100.000	Macaca_mulatta
ENSG00000213741	RPS29	100	100.000	ENSMNEG00000031083	RPS29	100	100.000	Macaca_nemestrina
ENSG00000213741	RPS29	100	100.000	ENSMLEG00000031131	RPS29	100	100.000	Mandrillus_leucophaeus
ENSG00000213741	RPS29	100	98.214	ENSMAMG00000013439	RPS29	100	98.214	Mastacembelus_armatus
ENSG00000213741	RPS29	98	100.000	ENSMODG00000011376	RPS29	100	100.000	Monodelphis_domestica
ENSG00000213741	RPS29	100	96.429	ENSMODG00000024853	-	100	96.429	Monodelphis_domestica
ENSG00000213741	RPS29	100	98.214	ENSMALG00000016951	RPS29	100	98.214	Monopterus_albus
ENSG00000213741	RPS29	100	89.286	MGP_CAROLIEiJ_G0018713	-	92	89.286	Mus_caroli
ENSG00000213741	RPS29	98	100.000	ENSMPUG00000004940	RPS29	90	100.000	Mustela_putorius_furo
ENSG00000213741	RPS29	98	100.000	ENSMLUG00000013869	RPS29	98	100.000	Myotis_lucifugus
ENSG00000213741	RPS29	100	100.000	ENSNLEG00000011953	-	100	100.000	Nomascus_leucogenys
ENSG00000213741	RPS29	98	100.000	ENSOPRG00000009148	-	100	100.000	Ochotona_princeps
ENSG00000213741	RPS29	98	89.362	ENSOPRG00000000738	-	100	90.741	Ochotona_princeps
ENSG00000213741	RPS29	98	100.000	ENSODEG00000011799	RPS29	100	100.000	Octodon_degus
ENSG00000213741	RPS29	100	98.214	ENSODEG00000020421	-	100	98.214	Octodon_degus
ENSG00000213741	RPS29	100	98.214	ENSORLG00000015002	RPS29	100	98.214	Oryzias_latipes
ENSG00000213741	RPS29	100	98.214	ENSORLG00020009469	RPS29	100	98.214	Oryzias_latipes_hni
ENSG00000213741	RPS29	98	97.872	ENSORLG00015004222	RPS29	100	84.615	Oryzias_latipes_hsok
ENSG00000213741	RPS29	98	100.000	ENSOGAG00000013218	RPS29	100	100.000	Otolemur_garnettii
ENSG00000213741	RPS29	96	85.106	ENSOARG00000000426	-	87	85.185	Ovis_aries
ENSG00000213741	RPS29	100	98.214	ENSOARG00000019935	-	100	98.214	Ovis_aries
ENSG00000213741	RPS29	100	85.714	ENSPPAG00000010296	-	69	85.714	Pan_paniscus
ENSG00000213741	RPS29	100	100.000	ENSPPAG00000031971	-	100	100.000	Pan_paniscus
ENSG00000213741	RPS29	99	100.000	ENSPTRG00000006312	RPS29	99	100.000	Pan_troglodytes
ENSG00000213741	RPS29	100	100.000	ENSPANG00000033998	RPS29	100	100.000	Papio_anubis
ENSG00000213741	RPS29	100	96.429	ENSPANG00000036041	-	100	96.429	Papio_anubis
ENSG00000213741	RPS29	100	98.214	ENSPMGG00000005504	RPS29	100	98.214	Periophthalmus_magnuspinnatus
ENSG00000213741	RPS29	98	97.872	ENSPFOG00000015337	RPS29	83	98.182	Poecilia_formosa
ENSG00000213741	RPS29	98	97.872	ENSPLAG00000012091	RPS29	77	98.182	Poecilia_latipinna
ENSG00000213741	RPS29	100	98.214	ENSPMEG00000008329	RPS29	100	98.214	Poecilia_mexicana
ENSG00000213741	RPS29	79	100.000	ENSPCAG00000010279	RPS29	100	100.000	Procavia_capensis
ENSG00000213741	RPS29	100	97.917	ENSPVAG00000013474	RPS29	100	95.082	Pteropus_vampyrus
ENSG00000213741	RPS29	100	98.214	ENSPNAG00000020504	RPS29	100	98.214	Pygocentrus_nattereri
ENSG00000213741	RPS29	100	100.000	ENSRBIG00000041822	RPS29	100	100.000	Rhinopithecus_bieti
ENSG00000213741	RPS29	100	100.000	ENSRROG00000042907	RPS29	100	100.000	Rhinopithecus_roxellana
ENSG00000213741	RPS29	98	100.000	ENSSHAG00000005584	RPS29	100	100.000	Sarcophilus_harrisii
ENSG00000213741	RPS29	100	98.214	ENSSFOG00015018708	RPS29	100	98.214	Scleropages_formosus
ENSG00000213741	RPS29	100	98.214	ENSSMAG00000006893	RPS29	100	98.214	Scophthalmus_maximus
ENSG00000213741	RPS29	100	98.214	ENSSLDG00000000846	RPS29	55	98.214	Seriola_lalandi_dorsalis
ENSG00000213741	RPS29	98	100.000	ENSSARG00000002131	RPS29	100	100.000	Sorex_araneus
ENSG00000213741	RPS29	98	97.872	ENSSPAG00000009639	RPS29	92	96.429	Stegastes_partitus
ENSG00000213741	RPS29	100	98.214	ENSTRUG00000012333	RPS29	100	98.214	Takifugu_rubripes
ENSG00000213741	RPS29	100	98.214	ENSTNIG00000010977	RPS29	100	98.214	Tetraodon_nigroviridis
ENSG00000213741	RPS29	100	95.833	ENSTBEG00000002475	RPS29	93	98.148	Tupaia_belangeri
ENSG00000213741	RPS29	100	98.214	ENSTTRG00000007629	RPS29	98	100.000	Tursiops_truncatus
ENSG00000213741	RPS29	96	82.609	ENSUMAG00000021041	-	98	82.000	Ursus_maritimus
ENSG00000213741	RPS29	71	97.059	ENSVPAG00000008670	RPS29	100	90.244	Vicugna_pacos
ENSG00000213741	RPS29	100	98.214	ENSXMAG00000008326	RPS29	100	98.214	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	TAS	Process
GO:0002181	cytoplasmic translation	25957688.	IDA	Process
GO:0003735	structural constituent of ribosome	15883184.	HDA	Function
GO:0003735	structural constituent of ribosome	21873635.	IBA	Function
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005829	cytosol	-	TAS	Component
GO:0005925	focal adhesion	21423176.	HDA	Component
GO:0006412	translation	8706699.15883184.	IC	Process
GO:0006413	translational initiation	-	TAS	Process
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	-	TAS	Process
GO:0008270	zinc ion binding	21873635.	IBA	Function
GO:0008270	zinc ion binding	8781548.25957688.	IDA	Function
GO:0015935	small ribosomal subunit	15883184.	HDA	Component
GO:0019083	viral transcription	-	TAS	Process
GO:0022627	cytosolic small ribosomal subunit	15883184.	HDA	Component
GO:0022627	cytosolic small ribosomal subunit	21873635.	IBA	Component
GO:0022627	cytosolic small ribosomal subunit	8706699.23636399.	IDA	Component
GO:0042788	polysomal ribosome	25957688.	IDA	Component
GO:0070062	extracellular exosome	20458337.	HDA	Component
GO:0098556	cytoplasmic side of rough endoplasmic reticulum membrane	-	ISS	Component