EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000213782 (Gene tree)
Gene ID
51202
Gene Symbol
DDX47
Alias
DKFZp564O176|FLJ30012|HQ0256|RRP3
Full Name
DEAD-box helicase 47
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
16,666 bases
Position
chr12:12,813,316-12,829,981
Accession
18682
RBP type
canonical RBP
Summary
This gene encodes a member of the DEAD box protein family. DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure, such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. The protein encoded by this gene can shuttle between the nucleus and the cytoplasm, and has an RNA-independent ATPase activity. Two alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000319578ResIIIPF04851.152.4e-0511
ENSP00000350698ResIIIPF04851.153e-0511
ENSP00000319578DEADPF00270.292.3e-4711
ENSP00000350698DEADPF00270.292.8e-4711
ENSP00000444000DEADPF00270.295.1e-2111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
15977068GABAA receptor-associated protein (GABARAP) induces apoptosis by interacting with DEAD (Asp-Glu-Ala-Asp/His) box polypeptide 47 (DDX 47).Biotechnol Lett2005 MayLee JH-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000541537DDX47-2061517--- (aa)--
ENST00000544400DDX47-210597-ENSP00000444000196 (aa)-F5H1N9
ENST00000535722DDX47-205586--- (aa)--
ENST00000545038DDX47-2122357--- (aa)--
ENST00000426619DDX47-204531--- (aa)--
ENST00000358007DDX47-2021817-ENSP00000350698455 (aa)-Q9H0S4
ENST00000542832DDX47-208554--- (aa)--
ENST00000544032DDX47-2091044--- (aa)--
ENST00000352940DDX47-2011698-ENSP00000319578406 (aa)-Q9H0S4
ENST00000542123DDX47-2072689--- (aa)--
ENST00000544497DDX47-211628--- (aa)--
ENST00000392155DDX47-203561--- (aa)--
Gene Model
Click here to download ENSG00000213782's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000213782Autistic Disorder3.1371000E-005-
ENSG00000213782Autistic Disorder9.1657000E-006-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000213782's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000213782DDX477940.934ENSG00000124228DDX279037.247
ENSG00000213782DDX478632.688ENSG00000165732DDX215632.688
ENSG00000213782DDX478635.194ENSG00000080007DDX436335.194
ENSG00000213782DDX478231.903ENSG00000141543EIF4A39131.903
ENSG00000213782DDX477535.159ENSG00000198563DDX39B8432.922
ENSG00000213782DDX477337.037ENSG00000111364DDX558438.750
ENSG00000213782DDX478432.987ENSG00000110367DDX67832.987
ENSG00000213782DDX477932.095ENSG00000107625DDX505232.500
ENSG00000213782DDX478136.000ENSG00000118197DDX5910030.667
ENSG00000213782DDX477339.412ENSG00000088205DDX188840.212
ENSG00000213782DDX478747.407ENSG00000105671DDX498447.407
ENSG00000213782DDX478036.533ENSG00000178105DDX105436.533
ENSG00000213782DDX477546.875ENSG00000079785DDX15446.875
ENSG00000213782DDX478932.796ENSG00000067048DDX3Y6034.328
ENSG00000213782DDX478534.091ENSG00000184735DDX536234.091
ENSG00000213782DDX477339.233ENSG00000108654DDX58352.632
ENSG00000213782DDX477534.582ENSG00000123136DDX39A9037.931
ENSG00000213782DDX477239.726ENSG00000125485DDX315730.751
ENSG00000213782DDX478633.790ENSG00000182810DDX288034.253
ENSG00000213782DDX477531.909ENSG00000278053DDX525831.909
ENSG00000213782DDX477638.202ENSG00000198231DDX425038.202
ENSG00000213782DDX479138.889ENSG00000089737DDX247434.167
ENSG00000213782DDX478532.653ENSG00000156976EIF4A29732.102
ENSG00000213782DDX478131.989ENSG00000161960EIF4A19934.409
ENSG00000213782DDX477635.278ENSG00000183258DDX417337.302
ENSG00000213782DDX477045.000ENSG00000136271DDX569938.919
ENSG00000213782DDX477735.262ENSG00000152670DDX46235.262
ENSG00000213782DDX478133.422ENSG00000123064DDX549737.745
ENSG00000213782DDX477141.194ENSG00000100201DDX177351.220
ENSG00000213782DDX478932.796ENSG00000215301DDX3X7436.441
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000213782DDX479384.360ENSAPOG00000021751ddx478984.112Acanthochromis_polyacanthus
ENSG00000213782DDX4710097.582ENSAMEG00000010740DDX4710097.582Ailuropoda_melanoleuca
ENSG00000213782DDX479284.450ENSACIG00000022802ddx478984.028Amphilophus_citrinellus
ENSG00000213782DDX479384.323ENSAOCG00000015213ddx478884.112Amphiprion_ocellaris
ENSG00000213782DDX479383.765ENSAPEG00000014476ddx479186.005Amphiprion_percula
ENSG00000213782DDX479384.870ENSATEG00000010277ddx478984.615Anabas_testudineus
ENSG00000213782DDX479688.539ENSAPLG00000015324DDX479988.235Anas_platyrhynchos
ENSG00000213782DDX479790.271ENSACAG00000010648DDX479990.271Anolis_carolinensis
ENSG00000213782DDX479790.972ENSANAG00000025235DDX4710099.187Aotus_nancymaae
ENSG00000213782DDX479879.646ENSAMXG00000010727ddx479679.646Astyanax_mexicanus
ENSG00000213782DDX4710096.499ENSBTAG00000019608DDX4710096.499Bos_taurus
ENSG00000213782DDX479166.268WBGene00012059T26G10.19163.535Caenorhabditis_elegans
ENSG00000213782DDX4710098.462ENSCJAG00000021633DDX4710098.462Callithrix_jacchus
ENSG00000213782DDX4710097.588ENSCAFG00000013224DDX479597.588Canis_familiaris
ENSG00000213782DDX4710097.588ENSCAFG00020006612DDX4710097.588Canis_lupus_dingo
ENSG00000213782DDX479996.053ENSCHIG00000026011DDX479996.053Capra_hircus
ENSG00000213782DDX4710098.529ENSTSYG00000002978DDX4710096.044Carlito_syrichta
ENSG00000213782DDX476695.205ENSCAPG00000002814DDX4710095.205Cavia_aperea
ENSG00000213782DDX4710096.491ENSCPOG00000035172DDX4710096.491Cavia_porcellus
ENSG00000213782DDX4710099.341ENSCCAG00000025717DDX4710099.341Cebus_capucinus
ENSG00000213782DDX479992.593ENSCATG00000038188-9996.000Cercocebus_atys
ENSG00000213782DDX4710098.462ENSCATG00000014281-10098.462Cercocebus_atys
ENSG00000213782DDX4710096.484ENSCLAG00000015856DDX4710096.484Chinchilla_lanigera
ENSG00000213782DDX4710098.901ENSCSAG00000008569DDX4710098.901Chlorocebus_sabaeus
ENSG00000213782DDX4710063.297ENSCHOG00000010943DDX4710063.297Choloepus_hoffmanni
ENSG00000213782DDX4710090.330ENSCPBG00000020967-9990.330Chrysemys_picta_bellii
ENSG00000213782DDX479569.925ENSCING00000002081-9868.680Ciona_intestinalis
ENSG00000213782DDX479570.766ENSCSAVG00000011566-9670.766Ciona_savignyi
ENSG00000213782DDX4710099.121ENSCANG00000040222DDX4710099.121Colobus_angolensis_palliatus
ENSG00000213782DDX4710095.604ENSCGRG00001014927Ddx4710095.604Cricetulus_griseus_chok1gshd
ENSG00000213782DDX4710095.604ENSCGRG00000010351Ddx4710095.604Cricetulus_griseus_crigri
ENSG00000213782DDX478786.329ENSCSEG00000007687ddx479086.329Cynoglossus_semilaevis
ENSG00000213782DDX4710090.810ENSDNOG00000040799DDX4710090.810Dasypus_novemcinctus
ENSG00000213782DDX479078.571FBgn0032919CG92538971.047Drosophila_melanogaster
ENSG00000213782DDX479795.420ENSETEG00000011487DDX478393.023Echinops_telfairi
ENSG00000213782DDX476779.612ENSEBUG00000003908-6985.641Eptatretus_burgeri
ENSG00000213782DDX4710097.363ENSEASG00005014653DDX4710097.363Equus_asinus_asinus
ENSG00000213782DDX4710097.582ENSECAG00000023622DDX4710097.582Equus_caballus
ENSG00000213782DDX479295.868ENSEEUG00000008639DDX478497.826Erinaceus_europaeus
ENSG00000213782DDX479680.866ENSELUG00000009495ddx478280.769Esox_lucius
ENSG00000213782DDX4710097.582ENSFCAG00000013990DDX4710097.582Felis_catus
ENSG00000213782DDX479293.317ENSFALG00000011391DDX479790.022Ficedula_albicollis
ENSG00000213782DDX4710095.165ENSFDAG00000014635-10095.165Fukomys_damarensis
ENSG00000213782DDX476570.714ENSFDAG00000004127-7370.000Fukomys_damarensis
ENSG00000213782DDX479682.420ENSFHEG00000011435ddx479581.457Fundulus_heteroclitus
ENSG00000213782DDX478483.812ENSGMOG00000010290ddx4710083.812Gadus_morhua
ENSG00000213782DDX479292.806ENSGALG00000011794DDX479691.572Gallus_gallus
ENSG00000213782DDX479681.633ENSGAFG00000017403ddx479680.702Gambusia_affinis
ENSG00000213782DDX479979.869ENSGACG00000007092ddx479979.869Gasterosteus_aculeatus
ENSG00000213782DDX4710089.011ENSGAGG00000023801DDX479089.011Gopherus_agassizii
ENSG00000213782DDX4710099.780ENSGGOG00000005882DDX4710099.780Gorilla_gorilla
ENSG00000213782DDX479284.211ENSHBUG00000022213ddx478983.879Haplochromis_burtoni
ENSG00000213782DDX4710096.264ENSHGLG00000007623DDX4710096.264Heterocephalus_glaber_female
ENSG00000213782DDX4710096.264ENSHGLG00100009764DDX4710096.264Heterocephalus_glaber_male
ENSG00000213782DDX479384.941ENSHCOG00000005496ddx479083.908Hippocampus_comes
ENSG00000213782DDX479681.798ENSIPUG00000023788ddx479481.798Ictalurus_punctatus
ENSG00000213782DDX479498.357ENSSTOG00000027266DDX479798.357Ictidomys_tridecemlineatus
ENSG00000213782DDX4710094.725ENSJJAG00000000118Ddx4710094.725Jaculus_jaculus
ENSG00000213782DDX479383.610ENSKMAG00000013071ddx478982.339Kryptolebias_marmoratus
ENSG00000213782DDX479185.024ENSLBEG00000028348ddx479182.207Labrus_bergylta
ENSG00000213782DDX479487.383ENSLACG00000013814DDX479586.836Latimeria_chalumnae
ENSG00000213782DDX4710097.143ENSLAFG00000015474DDX4710097.143Loxodonta_africana
ENSG00000213782DDX4710098.901ENSMFAG00000042577DDX4710098.901Macaca_fascicularis
ENSG00000213782DDX4710098.901ENSMMUG00000017993DDX4710098.901Macaca_mulatta
ENSG00000213782DDX4710093.289ENSMNEG00000044164DDX4710087.473Macaca_nemestrina
ENSG00000213782DDX4710098.681ENSMLEG00000040358-10098.681Mandrillus_leucophaeus
ENSG00000213782DDX479994.074ENSMLEG00000037204-9095.736Mandrillus_leucophaeus
ENSG00000213782DDX479782.045ENSMAMG00000008915ddx479580.568Mastacembelus_armatus
ENSG00000213782DDX479271.801ENSMZEG00005004902DDX478971.759Maylandia_zebra
ENSG00000213782DDX478646.750ENSMZEG00005022989-8946.750Maylandia_zebra
ENSG00000213782DDX479092.944ENSMGAG00000011857DDX479892.471Meleagris_gallopavo
ENSG00000213782DDX4710096.264ENSMAUG00000012214Ddx4710096.264Mesocricetus_auratus
ENSG00000213782DDX477274.306ENSMICG00000044024-9781.776Microcebus_murinus
ENSG00000213782DDX478497.125ENSMICG00000010086DDX4710098.058Microcebus_murinus
ENSG00000213782DDX4710096.264ENSMOCG00000003693Ddx4710096.264Microtus_ochrogaster
ENSG00000213782DDX479381.280ENSMMOG00000008610ddx479480.690Mola_mola
ENSG00000213782DDX4710090.351ENSMODG00000018223DDX479990.351Monodelphis_domestica
ENSG00000213782DDX479285.407ENSMALG00000002420ddx478985.047Monopterus_albus
ENSG00000213782DDX479898.529MGP_CAROLIEiJ_G0028986Ddx4710098.333Mus_caroli
ENSG00000213782DDX479898.529ENSMUSG00000030204Ddx4710098.333Mus_musculus
ENSG00000213782DDX479898.529MGP_PahariEiJ_G0022748Ddx4710098.333Mus_pahari
ENSG00000213782DDX479898.529MGP_SPRETEiJ_G0030034Ddx4710098.333Mus_spretus
ENSG00000213782DDX4710097.143ENSMPUG00000011726DDX4710097.143Mustela_putorius_furo
ENSG00000213782DDX4710096.703ENSMLUG00000003163DDX4710096.703Myotis_lucifugus
ENSG00000213782DDX4710096.703ENSNGAG00000020166Ddx4710096.703Nannospalax_galili
ENSG00000213782DDX479283.971ENSNBRG00000001394ddx479282.838Neolamprologus_brichardi
ENSG00000213782DDX4710099.121ENSNLEG00000003605DDX4710099.121Nomascus_leucogenys
ENSG00000213782DDX477595.337ENSMEUG00000005930DDX479982.487Notamacropus_eugenii
ENSG00000213782DDX477998.333ENSOPRG00000014446DDX477998.333Ochotona_princeps
ENSG00000213782DDX4710095.662ENSODEG00000012890DDX4710095.662Octodon_degus
ENSG00000213782DDX479582.719ENSONIG00000008325ddx479682.719Oreochromis_niloticus
ENSG00000213782DDX475693.636ENSOANG00000003026-9489.963Ornithorhynchus_anatinus
ENSG00000213782DDX4710096.923ENSOCUG00000014390DDX4710096.923Oryctolagus_cuniculus
ENSG00000213782DDX479682.460ENSORLG00000015021ddx479182.393Oryzias_latipes
ENSG00000213782DDX479482.870ENSORLG00020005546ddx478986.514Oryzias_latipes_hni
ENSG00000213782DDX479284.689ENSORLG00015017712ddx478884.382Oryzias_latipes_hsok
ENSG00000213782DDX479383.765ENSOMEG00000008065ddx478883.450Oryzias_melastigma
ENSG00000213782DDX479795.420ENSOGAG00000003748DDX4710092.308Otolemur_garnettii
ENSG00000213782DDX479996.053ENSOARG00000020845DDX479796.053Ovis_aries
ENSG00000213782DDX4710099.780ENSPPAG00000039793DDX4710099.780Pan_paniscus
ENSG00000213782DDX4710097.802ENSPPRG00000017561DDX4710097.802Panthera_pardus
ENSG00000213782DDX4710097.802ENSPTIG00000019604DDX4710097.802Panthera_tigris_altaica
ENSG00000213782DDX4710099.560ENSPTRG00000033743DDX4710099.560Pan_troglodytes
ENSG00000213782DDX4710098.462ENSPANG00000016430DDX4710098.462Papio_anubis
ENSG00000213782DDX479283.693ENSPKIG00000006718ddx478685.533Paramormyrops_kingsleyae
ENSG00000213782DDX479989.602ENSPSIG00000006056DDX479989.602Pelodiscus_sinensis
ENSG00000213782DDX479383.886ENSPMGG00000009920ddx479182.648Periophthalmus_magnuspinnatus
ENSG00000213782DDX4710096.044ENSPEMG00000009746Ddx4710096.044Peromyscus_maniculatus_bairdii
ENSG00000213782DDX479386.493ENSPMAG00000000186-10086.493Petromyzon_marinus
ENSG00000213782DDX479795.420ENSPCIG00000029927DDX479990.549Phascolarctos_cinereus
ENSG00000213782DDX479682.500ENSPFOG00000003330ddx479281.538Poecilia_formosa
ENSG00000213782DDX479077.372ENSPLAG00000014318ddx478777.372Poecilia_latipinna
ENSG00000213782DDX479682.500ENSPMEG00000018616ddx479281.538Poecilia_mexicana
ENSG00000213782DDX479682.127ENSPREG00000015560ddx479679.431Poecilia_reticulata
ENSG00000213782DDX4710099.780ENSPPYG00000004309DDX4710099.780Pongo_abelii
ENSG00000213782DDX476997.315ENSPCAG00000013197-7197.315Procavia_capensis
ENSG00000213782DDX4710097.802ENSPCOG00000028218DDX4710097.802Propithecus_coquereli
ENSG00000213782DDX479994.714ENSPVAG00000002640DDX479994.714Pteropus_vampyrus
ENSG00000213782DDX479284.211ENSPNYG00000020669ddx478983.879Pundamilia_nyererei
ENSG00000213782DDX479382.009ENSPNAG00000011435ddx479381.050Pygocentrus_nattereri
ENSG00000213782DDX4710096.484ENSRNOG00000007838Ddx4710096.484Rattus_norvegicus
ENSG00000213782DDX4710098.901ENSRBIG00000026934DDX4710098.901Rhinopithecus_bieti
ENSG00000213782DDX4710098.901ENSRROG00000025014DDX4710098.901Rhinopithecus_roxellana
ENSG00000213782DDX478956.724YHR065C-8256.724Saccharomyces_cerevisiae
ENSG00000213782DDX4710098.681ENSSBOG00000035866DDX4710098.681Saimiri_boliviensis_boliviensis
ENSG00000213782DDX479795.420ENSSHAG00000010825DDX478890.351Sarcophilus_harrisii
ENSG00000213782DDX479285.132ENSSFOG00015013392ddx479383.908Scleropages_formosus
ENSG00000213782DDX479284.928ENSSMAG00000004179ddx478784.579Scophthalmus_maximus
ENSG00000213782DDX479184.337ENSSDUG00000018110ddx478084.211Seriola_dumerili
ENSG00000213782DDX479284.689ENSSLDG00000018142ddx478684.346Seriola_lalandi_dorsalis
ENSG00000213782DDX479795.420ENSSARG00000007535DDX4710095.652Sorex_araneus
ENSG00000213782DDX479391.529ENSSPUG00000004958DDX479391.529Sphenodon_punctatus
ENSG00000213782DDX479384.235ENSSPAG00000016431ddx479082.472Stegastes_partitus
ENSG00000213782DDX4710097.363ENSSSCG00000033149DDX479698.592Sus_scrofa
ENSG00000213782DDX479794.615ENSTGUG00000009385DDX4710089.868Taeniopygia_guttata
ENSG00000213782DDX479781.490ENSTRUG00000021826ddx479481.390Takifugu_rubripes
ENSG00000213782DDX4710086.374ENSTBEG00000013697DDX4710086.374Tupaia_belangeri
ENSG00000213782DDX479995.374ENSTTRG00000015036DDX479995.374Tursiops_truncatus
ENSG00000213782DDX4710098.022ENSUAMG00000016382DDX479998.022Ursus_americanus
ENSG00000213782DDX4710098.242ENSUMAG00000002358DDX4710098.242Ursus_maritimus
ENSG00000213782DDX476696.491ENSVPAG00000012483-10074.644Vicugna_pacos
ENSG00000213782DDX478199.020ENSVPAG00000004648-5999.020Vicugna_pacos
ENSG00000213782DDX4710097.588ENSVVUG00000004697DDX479597.588Vulpes_vulpes
ENSG00000213782DDX479793.130ENSXETG00000022984ddx479987.004Xenopus_tropicalis
ENSG00000213782DDX479385.308ENSXCOG00000015880ddx479284.211Xiphophorus_couchianus
ENSG00000213782DDX479385.071ENSXMAG00000008268ddx478283.982Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0004386helicase activity-IEAFunction
GO:0005515protein binding15977068.16963496.17932509.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005654nucleoplasm-TASComponent
GO:0005730nucleolus16963496.IDAComponent
GO:0006364rRNA processing16963496.IMPProcess
GO:0006364rRNA processing-TASProcess
GO:0006397mRNA processing-IEAProcess
GO:0008380RNA splicing16963496.IMPProcess
GO:0008625extrinsic apoptotic signaling pathway via death domain receptors15977068.IDAProcess
GO:0016020membrane19946888.HDAComponent

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