EuRBPDB

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  • Description
  • RBDs
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSG00000228049 (Gene tree)
Gene ID
246721
Gene Symbol
POLR2J2
Alias
RPB11b1
Full Name
RNA polymerase II subunit J2
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
34,982 bases
Position
chr7:102,636,748-102,671,729
Accession
23208
RBP type
canonical RBP
Summary
This gene is a member of the RNA polymerase II subunit 11 gene family, which includes three genes in a cluster on chromosome 7q22.1 and a pseudogene on chromosome 7p13. The founding member of this family, DNA directed RNA polymerase II polypeptide J, has been shown to encode a subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes. This locus produces multiple, alternatively spliced transcripts that potentially express isoforms with distinct C-termini compared to DNA directed RNA polymerase II polypeptide J. Most or all variants are spliced to include additional non-coding exons at the 3' end which makes them candidates for nonsense-mediated decay (NMD). Consequently, it is not known if this locus expresses a protein or proteins in vivo. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000330898RNA_pol_L_2PF13656.61.1e-2811
ENSP00000351218RNA_pol_L_2PF13656.62.6e-2811
ENSP00000330898RNA_pol_LPF01193.241.2e-0911
ENSP00000351218RNA_pol_LPF01193.242.5e-0911

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
15947549Proteomic analysis of differentially expressed proteins between metastatic and non-metastatic human colorectal carcinoma cell lines.Eur J Gastroenterol Hepatol2005 JulYing-Tao Z-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000358438POLR2J2-2022065-ENSP00000351218158 (aa)-A6NFM0
ENST00000333432POLR2J2-201348-ENSP00000330898115 (aa)-Q9GZM3
Gene Model
Click here to download ENSG00000228049's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000228049's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000228049POLR2J210098.734ENSG00000005075POLR2J10098.734
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000228049POLR2J29489.908ENSAPOG00000019538polr2j9192.523Acanthochromis_polyacanthus
ENSG00000228049POLR2J29198.113ENSAMEG00000015480-9390.678Ailuropoda_melanoleuca
ENSG00000228049POLR2J29469.091ENSACIG00000014549POLR2J29169.091Amphilophus_citrinellus
ENSG00000228049POLR2J29488.991ENSAOCG00000006937polr2j9191.589Amphiprion_ocellaris
ENSG00000228049POLR2J29489.908ENSAPEG00000021761polr2j9192.523Amphiprion_percula
ENSG00000228049POLR2J29489.908ENSATEG00000009731polr2j9192.523Anabas_testudineus
ENSG00000228049POLR2J29489.908ENSATEG00000013312-9192.523Anabas_testudineus
ENSG00000228049POLR2J28094.565ENSAPLG00000003744-8997.778Anas_platyrhynchos
ENSG00000228049POLR2J29485.321ENSACAG00000000251POLR2J9187.850Anolis_carolinensis
ENSG00000228049POLR2J29489.908ENSACLG00000014564polr2j9192.523Astatotilapia_calliptera
ENSG00000228049POLR2J29491.743ENSAMXG00000007517polr2j9194.393Astyanax_mexicanus
ENSG00000228049POLR2J27361.905ENSBTAG00000048046-6661.905Bos_taurus
ENSG00000228049POLR2J29466.667WBGene00012187rpb-118966.667Caenorhabditis_elegans
ENSG00000228049POLR2J29495.413ENSCJAG00000016203-9495.614Callithrix_jacchus
ENSG00000228049POLR2J29495.413ENSCAFG00000013683-9198.131Canis_familiaris
ENSG00000228049POLR2J28293.617ENSTSYG00000029243-7996.739Carlito_syrichta
ENSG00000228049POLR2J29495.413ENSCPOG00000001401-9198.131Cavia_porcellus
ENSG00000228049POLR2J29469.444ENSCATG00000016595-7395.652Cercocebus_atys
ENSG00000228049POLR2J29495.413ENSCLAG00000005238-9198.131Chinchilla_lanigera
ENSG00000228049POLR2J29495.413ENSCSAG00000018092-9198.131Chlorocebus_sabaeus
ENSG00000228049POLR2J29480.734ENSCING00000020531-9183.019Ciona_intestinalis
ENSG00000228049POLR2J29480.734ENSCSAVG00000006948-9183.019Ciona_savignyi
ENSG00000228049POLR2J29495.413ENSCGRG00001012814Polr2j9198.131Cricetulus_griseus_chok1gshd
ENSG00000228049POLR2J29478.899ENSCGRG00000008433Polr2j9181.308Cricetulus_griseus_crigri
ENSG00000228049POLR2J29488.991ENSCSEG00000020352polr2j9191.589Cynoglossus_semilaevis
ENSG00000228049POLR2J29489.908ENSCVAG00000014267polr2j9987.179Cyprinodon_variegatus
ENSG00000228049POLR2J29490.826ENSDARG00000035146polr2j9193.458Danio_rerio
ENSG00000228049POLR2J29495.413ENSDORG00000005934Polr2j9198.131Dipodomys_ordii
ENSG00000228049POLR2J29475.229FBgn0032634Rpb1110071.795Drosophila_melanogaster
ENSG00000228049POLR2J29460.185ENSEBUG00000016100polr2j8962.264Eptatretus_burgeri
ENSG00000228049POLR2J29495.413ENSEASG00005016864-9198.131Equus_asinus_asinus
ENSG00000228049POLR2J29490.826ENSELUG00000012822polr2j9193.458Esox_lucius
ENSG00000228049POLR2J29495.413ENSFCAG00000000377-9198.131Felis_catus
ENSG00000228049POLR2J29495.413ENSFALG00000009523POLR2J9198.131Ficedula_albicollis
ENSG00000228049POLR2J29495.413ENSFDAG00000010507-9198.131Fukomys_damarensis
ENSG00000228049POLR2J29489.908ENSFHEG00000006625polr2j9192.523Fundulus_heteroclitus
ENSG00000228049POLR2J29490.826ENSGMOG00000018207polr2j9193.458Gadus_morhua
ENSG00000228049POLR2J29495.413ENSGALG00000030808-9198.131Gallus_gallus
ENSG00000228049POLR2J29489.908ENSGAFG00000019555polr2j9192.523Gambusia_affinis
ENSG00000228049POLR2J29489.908ENSGACG00000003310polr2j9192.523Gasterosteus_aculeatus
ENSG00000228049POLR2J28392.708ENSGAGG00000018304-8595.745Gopherus_agassizii
ENSG00000228049POLR2J28091.304ENSGGOG00000004519-7294.444Gorilla_gorilla
ENSG00000228049POLR2J29489.908ENSHBUG00000008467polr2j9192.523Haplochromis_burtoni
ENSG00000228049POLR2J29495.413ENSHGLG00000013598POLR2J9898.148Heterocephalus_glaber_female
ENSG00000228049POLR2J29495.413ENSHGLG00100011242POLR2J9898.148Heterocephalus_glaber_male
ENSG00000228049POLR2J29489.908ENSHCOG00000014827polr2j6292.523Hippocampus_comes
ENSG00000228049POLR2J29491.743ENSIPUG00000023960polr2j9194.393Ictalurus_punctatus
ENSG00000228049POLR2J29495.413ENSSTOG00000006377POLR2J9897.273Ictidomys_tridecemlineatus
ENSG00000228049POLR2J29495.413ENSJJAG00000013854-9198.131Jaculus_jaculus
ENSG00000228049POLR2J29891.228ENSJJAG00000018834-9195.327Jaculus_jaculus
ENSG00000228049POLR2J29489.908ENSKMAG00000014581polr2j7292.523Kryptolebias_marmoratus
ENSG00000228049POLR2J29489.908ENSLBEG00000005885polr2j9192.523Labrus_bergylta
ENSG00000228049POLR2J29491.743ENSLOCG00000001885polr2j8194.393Lepisosteus_oculatus
ENSG00000228049POLR2J29495.413ENSLAFG00000021507-9198.131Loxodonta_africana
ENSG00000228049POLR2J210094.828ENSMMUG00000012019POLR2J8994.828Macaca_mulatta
ENSG00000228049POLR2J29489.908ENSMAMG00000009374polr2j9192.523Mastacembelus_armatus
ENSG00000228049POLR2J29489.908ENSMZEG00005011932polr2j9192.523Maylandia_zebra
ENSG00000228049POLR2J29495.413ENSMGAG00000003534POLR2J9198.131Meleagris_gallopavo
ENSG00000228049POLR2J29495.413ENSMAUG00000013049Polr2j9198.131Mesocricetus_auratus
ENSG00000228049POLR2J27796.591ENSMICG00000026811-9593.750Microcebus_murinus
ENSG00000228049POLR2J29495.413ENSMOCG00000001294Polr2j9198.131Microtus_ochrogaster
ENSG00000228049POLR2J29488.991ENSMMOG00000013265polr2j9191.589Mola_mola
ENSG00000228049POLR2J29198.113ENSMODG00000013617-8895.536Monodelphis_domestica
ENSG00000228049POLR2J29489.908ENSMALG00000020749polr2j9192.523Monopterus_albus
ENSG00000228049POLR2J29495.413MGP_CAROLIEiJ_G0027851Polr2j9997.273Mus_caroli
ENSG00000228049POLR2J29495.413ENSMUSG00000039771Polr2j9997.273Mus_musculus
ENSG00000228049POLR2J29495.413MGP_PahariEiJ_G0024434Polr2j9894.872Mus_pahari
ENSG00000228049POLR2J29495.413MGP_SPRETEiJ_G0028853Polr2j9997.273Mus_spretus
ENSG00000228049POLR2J29495.413ENSMLUG00000010467POLR2J9198.131Myotis_lucifugus
ENSG00000228049POLR2J29495.413ENSNGAG00000023412Polr2j9897.273Nannospalax_galili
ENSG00000228049POLR2J26690.789ENSNBRG00000006580polr2j5990.789Neolamprologus_brichardi
ENSG00000228049POLR2J29495.413ENSODEG00000015648-9698.148Octodon_degus
ENSG00000228049POLR2J29471.560ENSODEG00000008559-9173.832Octodon_degus
ENSG00000228049POLR2J29489.908ENSONIG00000000259polr2j9192.523Oreochromis_niloticus
ENSG00000228049POLR2J29492.661ENSOANG00000020912POLR2J9195.327Ornithorhynchus_anatinus
ENSG00000228049POLR2J29694.595ENSOCUG00000023609POLR2J9392.373Oryctolagus_cuniculus
ENSG00000228049POLR2J29489.908ENSORLG00000029046polr2j7692.523Oryzias_latipes
ENSG00000228049POLR2J29489.908ENSORLG00020007625polr2j7692.523Oryzias_latipes_hni
ENSG00000228049POLR2J29489.908ENSORLG00015003457polr2j7692.523Oryzias_latipes_hsok
ENSG00000228049POLR2J29488.991ENSOMEG00000002097polr2j9191.589Oryzias_melastigma
ENSG00000228049POLR2J29272.222ENSOGAG00000008250-9368.908Otolemur_garnettii
ENSG00000228049POLR2J29495.413ENSOARG00000014204-8998.131Ovis_aries
ENSG00000228049POLR2J29495.413ENSPPRG00000012439-9198.131Panthera_pardus
ENSG00000228049POLR2J29187.619ENSPTIG00000018714-8996.739Panthera_tigris_altaica
ENSG00000228049POLR2J28094.565ENSPSIG00000010173-9097.778Pelodiscus_sinensis
ENSG00000228049POLR2J29489.908ENSPMGG00000021256polr2j9192.523Periophthalmus_magnuspinnatus
ENSG00000228049POLR2J29495.413ENSPEMG00000015733Polr2j9198.131Peromyscus_maniculatus_bairdii
ENSG00000228049POLR2J29796.460ENSPCIG00000009026-9198.131Phascolarctos_cinereus
ENSG00000228049POLR2J29489.908ENSPFOG00000012001polr2j9192.523Poecilia_formosa
ENSG00000228049POLR2J29489.908ENSPLAG00000014075polr2j9192.523Poecilia_latipinna
ENSG00000228049POLR2J29489.908ENSPMEG00000020585polr2j9192.523Poecilia_mexicana
ENSG00000228049POLR2J29489.908ENSPREG00000015255polr2j9192.523Poecilia_reticulata
ENSG00000228049POLR2J210093.966ENSPCOG00000024573-9198.131Propithecus_coquereli
ENSG00000228049POLR2J29198.113ENSPVAG00000017770-8681.579Pteropus_vampyrus
ENSG00000228049POLR2J29489.908ENSPNYG00000014832polr2j9192.523Pundamilia_nyererei
ENSG00000228049POLR2J29489.908ENSPNAG00000016595polr2j9192.523Pygocentrus_nattereri
ENSG00000228049POLR2J29495.413ENSRNOG00000001430Polr2j9198.131Rattus_norvegicus
ENSG00000228049POLR2J29495.413ENSSBOG00000025579-9198.131Saimiri_boliviensis_boliviensis
ENSG00000228049POLR2J25395.082ENSSHAG00000010443-69100.000Sarcophilus_harrisii
ENSG00000228049POLR2J29789.381ENSSFOG00015003371polr2j8194.393Scleropages_formosus
ENSG00000228049POLR2J29489.908ENSSMAG00000006729polr2j9192.523Scophthalmus_maximus
ENSG00000228049POLR2J29489.908ENSSDUG00000018490polr2j9192.523Seriola_dumerili
ENSG00000228049POLR2J29489.908ENSSLDG00000022354polr2j9192.523Seriola_lalandi_dorsalis
ENSG00000228049POLR2J29495.413ENSSPUG00000010802-9198.131Sphenodon_punctatus
ENSG00000228049POLR2J29489.908ENSSPAG00000021953polr2j9192.523Stegastes_partitus
ENSG00000228049POLR2J29478.704ENSSSCG00000003703-9370.769Sus_scrofa
ENSG00000228049POLR2J29495.413ENSSSCG00000007688-9198.131Sus_scrofa
ENSG00000228049POLR2J25395.082ENSTGUG00000004510-86100.000Taeniopygia_guttata
ENSG00000228049POLR2J28094.565ENSTGUG00000004501-9097.778Taeniopygia_guttata
ENSG00000228049POLR2J29490.826ENSTRUG00000020842polr2j9193.458Takifugu_rubripes
ENSG00000228049POLR2J29489.908ENSTNIG00000002994polr2j9192.523Tetraodon_nigroviridis
ENSG00000228049POLR2J29180.189ENSTBEG00000005797-7676.471Tupaia_belangeri
ENSG00000228049POLR2J29495.413ENSUAMG00000011310-9198.131Ursus_americanus
ENSG00000228049POLR2J29495.413ENSUMAG00000012594-9198.131Ursus_maritimus
ENSG00000228049POLR2J29493.578ENSXETG00000001108polr2j9196.262Xenopus_tropicalis
ENSG00000228049POLR2J29489.908ENSXMAG00000012422polr2j9192.523Xiphophorus_maculatus

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