EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000239789 (Gene tree)
Gene ID
51373
Gene Symbol
MRPS17
Alias
HSPC011|RPMS17|MRP-S17
Full Name
mitochondrial ribosomal protein S17
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
4,683 bases
Position
chr7:55,951,819-55,956,501
Accession
14047
RBP type
canonical RBP
Summary
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S17P family. The encoded protein is moderately conserved between human mitochondrial and prokaryotic ribosomal proteins. Pseudogenes corresponding to this gene are found on chromosomes 1p, 3p, 6q, 14p, 18q, and Xq. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000401349Ribosomal_S17PF00366.205.6e-1811
ENSP00000285298Ribosomal_S17PF00366.205.8e-1811
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000443449MRPS17-202718-ENSP00000401349129 (aa)-E9PE17
ENST00000285298MRPS17-2011845-ENSP00000285298130 (aa)-Q9Y2R5
Gene Model
Click here to download ENSG00000239789's gene model file
Pathways
Pathway IDPathway NameSource
hsa03010RibosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000239789's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000239789MRPS1710075.188ENSAPOG00000000295mrps178175.188Acanthochromis_polyacanthus
ENSG00000239789MRPS1710086.154ENSAMEG00000016161-9586.154Ailuropoda_melanoleuca
ENSG00000239789MRPS179573.810ENSACIG00000019454mrps179173.810Amphilophus_citrinellus
ENSG00000239789MRPS1710073.684ENSAOCG00000015138mrps179073.684Amphiprion_ocellaris
ENSG00000239789MRPS1710074.436ENSAPEG00000017481mrps179074.436Amphiprion_percula
ENSG00000239789MRPS179871.429ENSATEG00000007899mrps179071.318Anabas_testudineus
ENSG00000239789MRPS1710074.074ENSAPLG00000010523-9974.074Anas_platyrhynchos
ENSG00000239789MRPS179783.333ENSANAG00000025061-9783.333Aotus_nancymaae
ENSG00000239789MRPS1710075.385ENSANAG00000023853-10075.385Aotus_nancymaae
ENSG00000239789MRPS176992.222ENSANAG00000030302-8092.222Aotus_nancymaae
ENSG00000239789MRPS1710074.436ENSACLG00000007174mrps179074.436Astatotilapia_calliptera
ENSG00000239789MRPS179870.000ENSAMXG00000030410mrps179469.173Astyanax_mexicanus
ENSG00000239789MRPS1710087.692ENSBTAG00000007934MRPS1710087.692Bos_taurus
ENSG00000239789MRPS1710086.923ENSBTAG00000023186-10086.923Bos_taurus
ENSG00000239789MRPS1710093.846ENSCJAG00000021291-10093.846Callithrix_jacchus
ENSG00000239789MRPS1710085.385ENSCJAG00000022879-10085.385Callithrix_jacchus
ENSG00000239789MRPS1710090.769ENSCJAG00000022938-10090.769Callithrix_jacchus
ENSG00000239789MRPS1710088.462ENSCAFG00000010098-9288.462Canis_familiaris
ENSG00000239789MRPS1710088.462ENSCAFG00020004866-10088.462Canis_lupus_dingo
ENSG00000239789MRPS1710086.923ENSCHIG00000014572-10086.923Capra_hircus
ENSG00000239789MRPS1710090.769ENSTSYG00000001260-10090.769Carlito_syrichta
ENSG00000239789MRPS179687.097ENSCAPG00000006241-10087.097Cavia_aperea
ENSG00000239789MRPS1710094.615ENSCCAG00000025426-10094.615Cebus_capucinus
ENSG00000239789MRPS1710076.923ENSCCAG00000037194-10076.923Cebus_capucinus
ENSG00000239789MRPS1710079.231ENSCATG00000030575-10079.231Cercocebus_atys
ENSG00000239789MRPS178496.364ENSCATG00000039682-10096.364Cercocebus_atys
ENSG00000239789MRPS1710090.000ENSCLAG00000007650-10090.000Chinchilla_lanigera
ENSG00000239789MRPS1710086.154ENSCSAG00000019470-10086.154Chlorocebus_sabaeus
ENSG00000239789MRPS1710097.692ENSCSAG00000016120-10097.692Chlorocebus_sabaeus
ENSG00000239789MRPS1710087.692ENSCHOG00000010576-10087.692Choloepus_hoffmanni
ENSG00000239789MRPS176887.640ENSCHOG00000013255-10087.640Choloepus_hoffmanni
ENSG00000239789MRPS179974.627ENSCPBG00000014888-9874.627Chrysemys_picta_bellii
ENSG00000239789MRPS1710082.308ENSCANG00000035889-10082.308Colobus_angolensis_palliatus
ENSG00000239789MRPS1710098.462ENSCANG00000030538-10098.462Colobus_angolensis_palliatus
ENSG00000239789MRPS1710076.923ENSCANG00000035780-9476.923Colobus_angolensis_palliatus
ENSG00000239789MRPS179985.938ENSCGRG00001012873Mrps179985.938Cricetulus_griseus_chok1gshd
ENSG00000239789MRPS1710071.429ENSCSEG00000018563mrps179171.429Cynoglossus_semilaevis
ENSG00000239789MRPS1710075.188ENSCVAG00000006034mrps179075.188Cyprinodon_variegatus
ENSG00000239789MRPS1710074.436ENSDARG00000054164mrps179774.436Danio_rerio
ENSG00000239789MRPS1710086.154ENSDNOG00000014785-9286.154Dasypus_novemcinctus
ENSG00000239789MRPS177435.417FBgn0034986mRpS176235.417Drosophila_melanogaster
ENSG00000239789MRPS178462.963ENSEBUG00000010858mrps176462.963Eptatretus_burgeri
ENSG00000239789MRPS179589.344ENSEASG00005008885-10089.344Equus_asinus_asinus
ENSG00000239789MRPS179572.131ENSECAG00000028191-10072.131Equus_caballus
ENSG00000239789MRPS179589.344ENSECAG00000012583-10089.344Equus_caballus
ENSG00000239789MRPS1710070.073ENSELUG00000006708mrps178970.073Esox_lucius
ENSG00000239789MRPS1710091.538ENSFCAG00000041039-10091.538Felis_catus
ENSG00000239789MRPS179875.940ENSFALG00000006796-9075.940Ficedula_albicollis
ENSG00000239789MRPS1710086.923ENSFDAG00000001915-10086.923Fukomys_damarensis
ENSG00000239789MRPS179972.519ENSFHEG00000023082mrps179072.519Fundulus_heteroclitus
ENSG00000239789MRPS179469.421ENSGMOG00000007056mrps178869.421Gadus_morhua
ENSG00000239789MRPS179976.119ENSGALG00000002379MRPS179876.119Gallus_gallus
ENSG00000239789MRPS179971.970ENSGAFG00000001727mrps179071.970Gambusia_affinis
ENSG00000239789MRPS179969.403ENSGACG00000020492mrps179569.403Gasterosteus_aculeatus
ENSG00000239789MRPS179974.627ENSGAGG00000022429-9974.627Gopherus_agassizii
ENSG00000239789MRPS1710083.077ENSGGOG00000044141-10083.077Gorilla_gorilla
ENSG00000239789MRPS1710099.231ENSGGOG00000039358-10099.231Gorilla_gorilla
ENSG00000239789MRPS1710074.436ENSHBUG00000006127mrps179074.436Haplochromis_burtoni
ENSG00000239789MRPS179270.000ENSHGLG00000010593-9670.000Heterocephalus_glaber_female
ENSG00000239789MRPS1710091.538ENSHGLG00100010825-10091.538Heterocephalus_glaber_male
ENSG00000239789MRPS179270.000ENSHGLG00100012532-9670.000Heterocephalus_glaber_male
ENSG00000239789MRPS179867.188ENSHCOG00000009491mrps179267.188Hippocampus_comes
ENSG00000239789MRPS1710070.677ENSIPUG00000007844MRPS179470.677Ictalurus_punctatus
ENSG00000239789MRPS179172.650ENSJJAG00000022596-9272.650Jaculus_jaculus
ENSG00000239789MRPS1710075.188ENSKMAG00000006452mrps179075.188Kryptolebias_marmoratus
ENSG00000239789MRPS179971.429ENSLBEG00000000120mrps179171.429Labrus_bergylta
ENSG00000239789MRPS1710073.134ENSLACG00000018908mrps179373.134Latimeria_chalumnae
ENSG00000239789MRPS1710072.180ENSLOCG00000004118mrps179272.180Lepisosteus_oculatus
ENSG00000239789MRPS179385.833ENSLAFG00000027907-10085.833Loxodonta_africana
ENSG00000239789MRPS1710099.231ENSMFAG00000038594-10099.231Macaca_fascicularis
ENSG00000239789MRPS1710090.000ENSMMUG00000000585-7690.000Macaca_mulatta
ENSG00000239789MRPS1710085.385ENSMMUG00000041709-9485.385Macaca_mulatta
ENSG00000239789MRPS1710099.231ENSMNEG00000035442-10099.231Macaca_nemestrina
ENSG00000239789MRPS1710085.385ENSMLEG00000011393-9485.385Mandrillus_leucophaeus
ENSG00000239789MRPS1710098.462ENSMLEG00000040782-10098.462Mandrillus_leucophaeus
ENSG00000239789MRPS1710070.896ENSMAMG00000020981mrps179170.896Mastacembelus_armatus
ENSG00000239789MRPS1710074.436ENSMZEG00005024876mrps179074.436Maylandia_zebra
ENSG00000239789MRPS179976.119ENSMGAG00000004317-9876.119Meleagris_gallopavo
ENSG00000239789MRPS179984.375ENSMAUG00000021017Mrps179984.375Mesocricetus_auratus
ENSG00000239789MRPS1710090.769ENSMICG00000046806-10090.769Microcebus_murinus
ENSG00000239789MRPS179078.448ENSMOCG00000017721-8878.448Microtus_ochrogaster
ENSG00000239789MRPS179982.031ENSMOCG00000008471-9982.031Microtus_ochrogaster
ENSG00000239789MRPS1710072.388ENSMMOG00000012804mrps179472.388Mola_mola
ENSG00000239789MRPS179980.469ENSMODG00000006523-9980.469Monodelphis_domestica
ENSG00000239789MRPS1710072.932ENSMALG00000018057mrps179172.932Monopterus_albus
ENSG00000239789MRPS179186.325MGP_CAROLIEiJ_G0027784Mrps1710089.655Mus_caroli
ENSG00000239789MRPS179186.325ENSMUSG00000034211Mrps1710089.655Mus_musculus
ENSG00000239789MRPS179186.325MGP_PahariEiJ_G0024399Mrps1710089.655Mus_pahari
ENSG00000239789MRPS179186.325MGP_SPRETEiJ_G0028783Mrps1710089.655Mus_spretus
ENSG00000239789MRPS1710090.000ENSMPUG00000016230-7090.000Mustela_putorius_furo
ENSG00000239789MRPS1710085.385ENSMLUG00000016710-10085.385Myotis_lucifugus
ENSG00000239789MRPS179989.844ENSNGAG00000020609Mrps179889.844Nannospalax_galili
ENSG00000239789MRPS1710073.684ENSNBRG00000002238mrps179073.684Neolamprologus_brichardi
ENSG00000239789MRPS1710099.231ENSNLEG00000032290-10099.231Nomascus_leucogenys
ENSG00000239789MRPS179979.688ENSMEUG00000005143-9979.688Notamacropus_eugenii
ENSG00000239789MRPS179985.156ENSOPRG00000009945-10085.156Ochotona_princeps
ENSG00000239789MRPS1710074.615ENSODEG00000004346-10074.615Octodon_degus
ENSG00000239789MRPS1710086.154ENSODEG00000017232-10086.154Octodon_degus
ENSG00000239789MRPS1710088.462ENSODEG00000018639-10088.462Octodon_degus
ENSG00000239789MRPS1710070.000ENSODEG00000006408-10070.000Octodon_degus
ENSG00000239789MRPS178680.180ENSODEG00000014911-9980.180Octodon_degus
ENSG00000239789MRPS177986.275ENSODEG00000015145-10086.275Octodon_degus
ENSG00000239789MRPS1710074.436ENSONIG00000008746mrps179074.436Oreochromis_niloticus
ENSG00000239789MRPS1710091.538ENSOCUG00000001767-9591.538Oryctolagus_cuniculus
ENSG00000239789MRPS1710091.538ENSOCUG00000024077-10091.538Oryctolagus_cuniculus
ENSG00000239789MRPS1710091.538ENSOCUG00000027419-10091.538Oryctolagus_cuniculus
ENSG00000239789MRPS179975.758ENSORLG00000002795mrps179075.758Oryzias_latipes
ENSG00000239789MRPS179975.758ENSORLG00020016792mrps179075.758Oryzias_latipes_hni
ENSG00000239789MRPS179975.758ENSORLG00015001149mrps179075.758Oryzias_latipes_hsok
ENSG00000239789MRPS179875.969ENSOMEG00000009095mrps179275.758Oryzias_melastigma
ENSG00000239789MRPS1710079.231ENSOGAG00000009088-10079.231Otolemur_garnettii
ENSG00000239789MRPS1710090.000ENSOGAG00000010486-10090.000Otolemur_garnettii
ENSG00000239789MRPS1710086.923ENSOARG00000009925-8886.923Ovis_aries
ENSG00000239789MRPS1710082.308ENSPPAG00000038238-10082.308Pan_paniscus
ENSG00000239789MRPS1710099.231ENSPPAG00000036712-10099.231Pan_paniscus
ENSG00000239789MRPS1710091.538ENSPPRG00000000525-10091.538Panthera_pardus
ENSG00000239789MRPS1710091.538ENSPTIG00000019404-8291.538Panthera_tigris_altaica
ENSG00000239789MRPS1710099.231ENSPTRG00000019203MRPS1710099.231Pan_troglodytes
ENSG00000239789MRPS1710083.846ENSPTRG00000048604-10083.846Pan_troglodytes
ENSG00000239789MRPS1710092.308ENSPTRG00000046133-9492.308Pan_troglodytes
ENSG00000239789MRPS1710099.231ENSPTRG00000043904-10099.231Pan_troglodytes
ENSG00000239789MRPS1710087.692ENSPTRG00000051838-10087.692Pan_troglodytes
ENSG00000239789MRPS1710098.462ENSPANG00000015285-10098.462Papio_anubis
ENSG00000239789MRPS178976.724ENSPANG00000030519-10076.724Papio_anubis
ENSG00000239789MRPS179865.891ENSPKIG00000018389mrps179465.891Paramormyrops_kingsleyae
ENSG00000239789MRPS179976.119ENSPSIG00000013261-9876.119Pelodiscus_sinensis
ENSG00000239789MRPS178467.273ENSPMAG00000006299mrps177167.273Petromyzon_marinus
ENSG00000239789MRPS179870.000ENSPFOG00000010719mrps179069.925Poecilia_formosa
ENSG00000239789MRPS179870.000ENSPLAG00000018054mrps179069.925Poecilia_latipinna
ENSG00000239789MRPS179870.000ENSPMEG00000014029mrps179069.925Poecilia_mexicana
ENSG00000239789MRPS1710069.173ENSPREG00000009010mrps179269.173Poecilia_reticulata
ENSG00000239789MRPS1710099.231ENSPPYG00000017547-10099.231Pongo_abelii
ENSG00000239789MRPS178476.147ENSPCOG00000000608-9276.147Propithecus_coquereli
ENSG00000239789MRPS1710090.000ENSPCOG00000013668-10090.000Propithecus_coquereli
ENSG00000239789MRPS1710089.231ENSPVAG00000006305-9989.231Pteropus_vampyrus
ENSG00000239789MRPS1710074.436ENSPNYG00000018693mrps179074.436Pundamilia_nyererei
ENSG00000239789MRPS179873.846ENSPNAG00000015336mrps178072.932Pygocentrus_nattereri
ENSG00000239789MRPS179884.252ENSRNOG00000000926Mrps1710084.252Rattus_norvegicus
ENSG00000239789MRPS179974.436ENSRNOG00000030847AABR07012868.19473.333Rattus_norvegicus
ENSG00000239789MRPS179198.291ENSRBIG00000032061-10096.639Rhinopithecus_bieti
ENSG00000239789MRPS179998.438ENSRBIG00000032287-9998.438Rhinopithecus_bieti
ENSG00000239789MRPS1710098.462ENSRROG00000000039-10098.462Rhinopithecus_roxellana
ENSG00000239789MRPS179999.219ENSRROG00000021955-9999.219Rhinopithecus_roxellana
ENSG00000239789MRPS1710095.385ENSSBOG00000025889-10095.385Saimiri_boliviensis_boliviensis
ENSG00000239789MRPS179585.366ENSSBOG00000003355-9485.366Saimiri_boliviensis_boliviensis
ENSG00000239789MRPS1710070.769ENSSBOG00000030322-10070.769Saimiri_boliviensis_boliviensis
ENSG00000239789MRPS1710082.946ENSSHAG00000009749-10082.946Sarcophilus_harrisii
ENSG00000239789MRPS1710067.424ENSSFOG00015006180mrps179267.424Scleropages_formosus
ENSG00000239789MRPS1710071.642ENSSMAG00000001680mrps179071.642Scophthalmus_maximus
ENSG00000239789MRPS1710071.642ENSSDUG00000017736mrps179171.642Seriola_dumerili
ENSG00000239789MRPS1710071.642ENSSLDG00000015517mrps179171.642Seriola_lalandi_dorsalis
ENSG00000239789MRPS179973.881ENSSPUG00000002623-9873.881Sphenodon_punctatus
ENSG00000239789MRPS179969.697ENSSPAG00000008641mrps179069.697Stegastes_partitus
ENSG00000239789MRPS1710079.231ENSSSCG00000034769-9179.231Sus_scrofa
ENSG00000239789MRPS1710086.154ENSSSCG00000007749-10086.154Sus_scrofa
ENSG00000239789MRPS179976.119ENSTGUG00000005052MRPS179876.119Taeniopygia_guttata
ENSG00000239789MRPS179870.455ENSTRUG00000024068mrps179169.630Takifugu_rubripes
ENSG00000239789MRPS1710071.852ENSTNIG00000016121mrps179171.852Tetraodon_nigroviridis
ENSG00000239789MRPS176791.954ENSTBEG00000007385-9991.954Tupaia_belangeri
ENSG00000239789MRPS1710086.154ENSTTRG00000015139-10086.154Tursiops_truncatus
ENSG00000239789MRPS1710088.462ENSUAMG00000002970-10088.462Ursus_americanus
ENSG00000239789MRPS1710090.769ENSUMAG00000015822-10090.769Ursus_maritimus
ENSG00000239789MRPS1710089.231ENSVVUG00000016664-10089.231Vulpes_vulpes
ENSG00000239789MRPS179868.992ENSXETG00000010088mrps179168.992Xenopus_tropicalis
ENSG00000239789MRPS178677.477ENSXCOG00000009153mrps178677.477Xiphophorus_couchianus
ENSG00000239789MRPS179871.538ENSXMAG00000007366mrps179170.896Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003735structural constituent of ribosome11402041.HDAFunction
GO:0003735structural constituent of ribosome11279123.NASFunction
GO:0005743mitochondrial inner membrane-TASComponent
GO:0005763mitochondrial small ribosomal subunit11402041.HDAComponent
GO:0005763mitochondrial small ribosomal subunit21873635.IBAComponent
GO:0005763mitochondrial small ribosomal subunit25838379.IDAComponent
GO:0005763mitochondrial small ribosomal subunit11279123.NASComponent
GO:0006412translation11279123.NASProcess
GO:0019843rRNA binding-IEAFunction
GO:0032543mitochondrial translation11402041.HDAProcess
GO:0070125mitochondrial translational elongation-TASProcess
GO:0070126mitochondrial translational termination-TASProcess

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