EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000242875 (Gene tree)
Gene ID: 378948
Gene Symbol: RBMY1B
Alias: N
Full Name: RNA binding motif protein, Y-linked, family 1, member B
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Plus strand
Length: 37,757 bases
Position: chrY:21,511,338-21,549,094
Accession: 23914
RBP type: canonical RBP
Summary: This gene encodes a protein containing an RNA-binding motif in the N-terminus and four SRGY (serine, arginine, glycine, tyrosine) boxes in the C-terminus. This protein likely functions as a splicing factor during spermatogenesis. Multiple closely related paralogs of this gene are found in a gene cluster in the AZFb azoospermia factor region of chromosome Y. Most of these related copies are thought to be pseudogenes, though several likely encode functional proteins. [provided by RefSeq, Mar 2016]

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000481627	RBM1CTR	PF08081.11	7.6e-22	1	1
ENSP00000372484	RBM1CTR	PF08081.11	8.4e-22	1	1
ENSP00000481627	RRM_1	PF00076.22	8.4e-21	1	1
ENSP00000372484	RRM_1	PF00076.22	9.2e-21	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000383020	RBMY1B-202	1921	XM_011531434	ENSP00000372484	496 (aa)	XP_011529736	A6NDE4
ENST00000382639	RBMY1B-201	1718	-	ENSP00000372084	81 (aa)	-	F2Z2U1
ENST00000619219	RBMY1B-203	1491	-	ENSP00000481627	459 (aa)	-	UPI0000425955

Gene Model

Click here to download ENSG00000242875's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000242875's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSG00000242875	RBMY1B	75	34.426	ENSG00000163694	RBM47	51	34.286
ENSG00000242875	RBMY1B	100	100.000	ENSG00000242389	RBMY1E	100	100.000
ENSG00000242875	RBMY1B	100	99.194	ENSG00000226941	RBMY1J	100	99.194
ENSG00000242875	RBMY1B	63	44.231	ENSG00000138668	HNRNPD	68	36.842
ENSG00000242875	RBMY1B	81	34.848	ENSG00000100650	SRSF5	85	35.484
ENSG00000242875	RBMY1B	90	30.137	ENSG00000112081	SRSF3	73	30.137
ENSG00000242875	RBMY1B	85	34.286	ENSG00000104852	SNRNP70	55	36.538
ENSG00000242875	RBMY1B	86	30.000	ENSG00000090621	PABPC4	66	32.941
ENSG00000242875	RBMY1B	81	55.224	ENSG00000102317	RBM3	52	54.321
ENSG00000242875	RBMY1B	90	75.676	ENSG00000170748	RBMXL2	93	53.435
ENSG00000242875	RBMY1B	100	100.000	ENSG00000234414	RBMY1A1	100	100.000
ENSG00000242875	RBMY1B	93	80.263	ENSG00000147274	RBMX	97	80.556
ENSG00000242875	RBMY1B	77	38.710	ENSG00000070756	PABPC1	84	36.508
ENSG00000242875	RBMY1B	65	50.000	ENSG00000153944	MSI2	61	45.000
ENSG00000242875	RBMY1B	80	33.333	ENSG00000188529	SRSF10	50	31.818
ENSG00000242875	RBMY1B	69	39.286	ENSG00000152430	BOLL	51	38.636
ENSG00000242875	RBMY1B	100	100.000	ENSG00000244395	RBMY1D	100	100.000
ENSG00000242875	RBMY1B	75	43.548	ENSG00000132819	RBM38	72	39.773
ENSG00000242875	RBMY1B	79	36.923	ENSG00000161547	SRSF2	78	38.235
ENSG00000242875	RBMY1B	90	78.378	ENSG00000213516	RBMXL1	100	68.750
ENSG00000242875	RBMY1B	79	36.923	ENSG00000151923	TIAL1	66	34.444
ENSG00000242875	RBMY1B	100	99.194	ENSG00000169800	RBMY1F	100	99.194
ENSG00000242875	RBMY1B	79	31.169	ENSG00000149187	CELF1	89	31.169
ENSG00000242875	RBMY1B	84	41.071	ENSG00000071626	DAZAP1	79	41.071
ENSG00000242875	RBMY1B	91	56.000	ENSG00000099622	CIRBP	99	56.962
ENSG00000242875	RBMY1B	84	33.824	ENSG00000076053	RBM7	63	34.177
ENSG00000242875	RBMY1B	86	30.000	ENSG00000115128	SF3B6	54	30.000
ENSG00000242875	RBMY1B	79	38.462	ENSG00000116001	TIA1	86	36.667
ENSG00000242875	RBMY1B	75	41.071	ENSG00000197451	HNRNPAB	54	36.792
ENSG00000242875	RBMY1B	85	31.429	ENSG00000114503	NCBP2	51	31.429
ENSG00000242875	RBMY1B	68	42.000	ENSG00000135486	HNRNPA1	54	30.952
ENSG00000242875	RBMY1B	70	43.333	ENSG00000177733	HNRNPA0	52	43.333
ENSG00000242875	RBMY1B	78	39.683	ENSG00000111786	SRSF9	78	34.343

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000242875	RBMY1B	90	93.151	ENSCSAG00000018304	-	100	67.269	Chlorocebus_sabaeus
ENSG00000242875	RBMY1B	90	76.712	ENSCSAG00000018310	-	100	55.556	Chlorocebus_sabaeus
ENSG00000242875	RBMY1B	80	66.667	ENSEBUG00000007630	-	69	67.692	Eptatretus_burgeri
ENSG00000242875	RBMY1B	80	65.152	ENSEBUG00000014816	-	70	66.154	Eptatretus_burgeri
ENSG00000242875	RBMY1B	88	65.278	ENSFDAG00000005725	-	96	65.278	Fukomys_damarensis
ENSG00000242875	RBMY1B	88	65.278	ENSFDAG00000013847	-	96	65.278	Fukomys_damarensis
ENSG00000242875	RBMY1B	90	94.521	ENSMMUG00000039261	-	79	90.110	Macaca_mulatta
ENSG00000242875	RBMY1B	90	56.757	ENSMUSG00000093918	Gm21677	87	44.170	Mus_musculus
ENSG00000242875	RBMY1B	90	56.757	ENSMUSG00000094658	Rbmy	87	44.170	Mus_musculus
ENSG00000242875	RBMY1B	90	56.757	ENSMUSG00000094511	Gm21693	87	44.170	Mus_musculus
ENSG00000242875	RBMY1B	90	59.459	ENSMUSG00000096520	Gm3376	87	45.230	Mus_musculus
ENSG00000242875	RBMY1B	90	56.757	ENSMUSG00000095948	Gm21708	87	44.170	Mus_musculus
ENSG00000242875	RBMY1B	90	56.757	ENSMUSG00000101667	Gm29289	100	50.898	Mus_musculus
ENSG00000242875	RBMY1B	90	58.108	ENSMUSG00000102053	Gm4064	87	44.170	Mus_musculus
ENSG00000242875	RBMY1B	90	56.757	ENSMUSG00000093987	Gm21704	87	44.170	Mus_musculus
ENSG00000242875	RBMY1B	90	58.108	ENSMUSG00000091987	Gm10352	87	44.523	Mus_musculus
ENSG00000242875	RBMY1B	90	58.108	ENSMUSG00000095852	Gm10256	87	44.523	Mus_musculus
ENSG00000242875	RBMY1B	100	86.000	ENSPTRG00000046270	-	100	89.201	Pan_troglodytes
ENSG00000242875	RBMY1B	100	93.089	ENSPTRG00000047385	-	100	93.089	Pan_troglodytes
ENSG00000242875	RBMY1B	100	89.391	ENSPTRG00000045105	-	100	89.391	Pan_troglodytes
ENSG00000242875	RBMY1B	100	86.444	ENSPTRG00000050914	-	100	86.444	Pan_troglodytes
ENSG00000242875	RBMY1B	100	90.652	ENSPTRG00000051395	-	100	90.652	Pan_troglodytes
ENSG00000242875	RBMY1B	100	93.561	ENSPTRG00000051022	-	100	93.561	Pan_troglodytes
ENSG00000242875	RBMY1B	100	89.194	ENSPTRG00000043157	-	100	89.194	Pan_troglodytes
ENSG00000242875	RBMY1B	100	94.130	ENSPTRG00000046311	-	100	94.130	Pan_troglodytes
ENSG00000242875	RBMY1B	100	91.751	ENSPTRG00000042791	-	100	91.751	Pan_troglodytes
ENSG00000242875	RBMY1B	100	75.949	ENSPTRG00000049088	-	100	75.949	Pan_troglodytes
ENSG00000242875	RBMY1B	100	89.194	ENSPTRG00000047951	-	100	89.194	Pan_troglodytes
ENSG00000242875	RBMY1B	86	61.972	ENSRNOG00000060963	Rbmy1j	81	48.000	Rattus_norvegicus
ENSG00000242875	RBMY1B	90	91.781	ENSRBIG00000007617	-	99	78.498	Rhinopithecus_bieti
ENSG00000242875	RBMY1B	97	63.670	ENSRBIG00000029066	-	100	63.670	Rhinopithecus_bieti
ENSG00000242875	RBMY1B	90	91.781	ENSRROG00000029740	-	99	80.205	Rhinopithecus_roxellana

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	9598316.	NAS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	9598316.	TAS	Component
GO:0005681	spliceosomal complex	21873635.	IBA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0007283	spermatogenesis	9598316.	TAS	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0008584	male gonad development	9598316.	IMP	Process
GO:0048026	positive regulation of mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component