EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000244395 (Gene tree)
Gene ID: 378949
Gene Symbol: RBMY1D
Alias: N
Full Name: RNA binding motif protein, Y-linked, family 1, member D
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 32,358 bases
Position: chrY:21,868,388-21,900,745
Accession: 23915
RBP type: canonical RBP
Summary: This gene encodes a protein containing an RNA-binding motif in the N-terminus and four SRGY (serine, arginine, glycine, tyrosine) boxes in the C-terminus. This protein likely functions as a splicing factor during spermatogenesis. Multiple closely related paralogs of this gene are found in a gene cluster in the AZFb azoospermia factor region of chromosome Y. Most of these related copies are thought to be pseudogenes, though several likely encode functional proteins. [provided by RefSeq, Mar 2016]

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000399181	RBM1CTR	PF08081.11	7.6e-22	1	1
ENSP00000372127	RBM1CTR	PF08081.11	8.4e-22	1	1
ENSP00000399181	RRM_1	PF00076.22	8.4e-21	1	1
ENSP00000372127	RRM_1	PF00076.22	9.3e-21	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000418956	RBMY1D-203	1491	XM_011531489	ENSP00000399181	459 (aa)	XP_011529791	P0C7P1
ENST00000382680	RBMY1D-202	1921	XM_011531486	ENSP00000372127	496 (aa)	XP_011529788	P0C7P1
ENST00000382653	RBMY1D-201	1718	-	ENSP00000372099	81 (aa)	-	F2Z2U1

Gene Model

Click here to download ENSG00000244395's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000244395's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSG00000244395	RBMY1D	91	56.000	ENSG00000099622	CIRBP	99	56.962
ENSG00000244395	RBMY1D	69	39.286	ENSG00000152430	BOLL	51	38.636
ENSG00000244395	RBMY1D	79	36.923	ENSG00000151923	TIAL1	66	34.444
ENSG00000244395	RBMY1D	68	42.000	ENSG00000135486	HNRNPA1	54	30.952
ENSG00000244395	RBMY1D	85	34.286	ENSG00000104852	SNRNP70	55	36.538
ENSG00000244395	RBMY1D	77	38.710	ENSG00000070756	PABPC1	84	36.508
ENSG00000244395	RBMY1D	93	80.263	ENSG00000147274	RBMX	97	80.556
ENSG00000244395	RBMY1D	79	31.169	ENSG00000149187	CELF1	89	31.169
ENSG00000244395	RBMY1D	86	30.000	ENSG00000090621	PABPC4	66	32.941
ENSG00000244395	RBMY1D	90	30.137	ENSG00000112081	SRSF3	73	30.137
ENSG00000244395	RBMY1D	70	43.333	ENSG00000177733	HNRNPA0	52	43.333
ENSG00000244395	RBMY1D	75	43.548	ENSG00000132819	RBM38	72	39.773
ENSG00000244395	RBMY1D	65	50.000	ENSG00000153944	MSI2	61	45.000
ENSG00000244395	RBMY1D	75	41.071	ENSG00000197451	HNRNPAB	54	36.792
ENSG00000244395	RBMY1D	100	100.000	ENSG00000234414	RBMY1A1	100	100.000
ENSG00000244395	RBMY1D	100	98.992	ENSG00000226941	RBMY1J	100	98.992
ENSG00000244395	RBMY1D	84	33.824	ENSG00000076053	RBM7	77	31.148
ENSG00000244395	RBMY1D	75	34.426	ENSG00000163694	RBM47	51	34.286
ENSG00000244395	RBMY1D	78	39.683	ENSG00000111786	SRSF9	78	34.343
ENSG00000244395	RBMY1D	63	44.231	ENSG00000138668	HNRNPD	68	36.842
ENSG00000244395	RBMY1D	81	34.848	ENSG00000100650	SRSF5	85	35.484
ENSG00000244395	RBMY1D	100	100.000	ENSG00000242389	RBMY1E	100	100.000
ENSG00000244395	RBMY1D	85	31.429	ENSG00000114503	NCBP2	51	31.429
ENSG00000244395	RBMY1D	79	36.923	ENSG00000161547	SRSF2	78	38.235
ENSG00000244395	RBMY1D	79	38.462	ENSG00000116001	TIA1	86	36.667
ENSG00000244395	RBMY1D	81	55.224	ENSG00000102317	RBM3	52	54.321
ENSG00000244395	RBMY1D	86	30.000	ENSG00000115128	SF3B6	54	30.000
ENSG00000244395	RBMY1D	100	100.000	ENSG00000242875	RBMY1B	100	100.000
ENSG00000244395	RBMY1D	84	41.071	ENSG00000071626	DAZAP1	79	41.071
ENSG00000244395	RBMY1D	90	75.676	ENSG00000170748	RBMXL2	84	53.435
ENSG00000244395	RBMY1D	100	98.992	ENSG00000169800	RBMY1F	100	98.992
ENSG00000244395	RBMY1D	80	33.333	ENSG00000188529	SRSF10	50	31.818
ENSG00000244395	RBMY1D	90	78.378	ENSG00000213516	RBMXL1	100	68.750

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000244395	RBMY1D	90	76.712	ENSCSAG00000018310	-	100	55.354	Chlorocebus_sabaeus
ENSG00000244395	RBMY1D	90	93.151	ENSCSAG00000018304	-	100	67.068	Chlorocebus_sabaeus
ENSG00000244395	RBMY1D	80	66.667	ENSEBUG00000007630	-	69	67.692	Eptatretus_burgeri
ENSG00000244395	RBMY1D	80	65.152	ENSEBUG00000014816	-	70	66.154	Eptatretus_burgeri
ENSG00000244395	RBMY1D	88	65.278	ENSFDAG00000013847	-	96	65.278	Fukomys_damarensis
ENSG00000244395	RBMY1D	88	65.278	ENSFDAG00000005725	-	96	65.278	Fukomys_damarensis
ENSG00000244395	RBMY1D	90	94.521	ENSMMUG00000039261	-	79	90.110	Macaca_mulatta
ENSG00000244395	RBMY1D	90	56.757	ENSMUSG00000094658	Rbmy	87	44.170	Mus_musculus
ENSG00000244395	RBMY1D	90	59.459	ENSMUSG00000096520	Gm3376	87	45.230	Mus_musculus
ENSG00000244395	RBMY1D	90	58.108	ENSMUSG00000102053	Gm4064	87	44.170	Mus_musculus
ENSG00000244395	RBMY1D	90	56.757	ENSMUSG00000095948	Gm21708	87	44.170	Mus_musculus
ENSG00000244395	RBMY1D	90	56.757	ENSMUSG00000093987	Gm21704	87	44.170	Mus_musculus
ENSG00000244395	RBMY1D	90	58.108	ENSMUSG00000095852	Gm10256	87	44.523	Mus_musculus
ENSG00000244395	RBMY1D	90	56.757	ENSMUSG00000093918	Gm21677	87	44.170	Mus_musculus
ENSG00000244395	RBMY1D	90	56.757	ENSMUSG00000094511	Gm21693	87	44.170	Mus_musculus
ENSG00000244395	RBMY1D	90	58.108	ENSMUSG00000091987	Gm10352	87	44.523	Mus_musculus
ENSG00000244395	RBMY1D	90	56.757	ENSMUSG00000101667	Gm29289	100	50.898	Mus_musculus
ENSG00000244395	RBMY1D	100	91.739	ENSPTRG00000042791	-	100	91.739	Pan_troglodytes
ENSG00000244395	RBMY1D	100	89.194	ENSPTRG00000045105	-	100	89.194	Pan_troglodytes
ENSG00000244395	RBMY1D	100	94.130	ENSPTRG00000046311	-	100	94.130	Pan_troglodytes
ENSG00000244395	RBMY1D	100	88.998	ENSPTRG00000047951	-	100	88.998	Pan_troglodytes
ENSG00000244395	RBMY1D	100	88.998	ENSPTRG00000043157	-	100	88.998	Pan_troglodytes
ENSG00000244395	RBMY1D	100	93.360	ENSPTRG00000051022	-	100	93.360	Pan_troglodytes
ENSG00000244395	RBMY1D	100	86.248	ENSPTRG00000050914	-	100	86.248	Pan_troglodytes
ENSG00000244395	RBMY1D	100	93.089	ENSPTRG00000047385	-	100	93.089	Pan_troglodytes
ENSG00000244395	RBMY1D	100	90.652	ENSPTRG00000051395	-	100	90.652	Pan_troglodytes
ENSG00000244395	RBMY1D	100	75.949	ENSPTRG00000049088	-	100	75.949	Pan_troglodytes
ENSG00000244395	RBMY1D	90	95.890	ENSPTRG00000046270	-	100	89.201	Pan_troglodytes
ENSG00000244395	RBMY1D	86	61.972	ENSRNOG00000060963	Rbmy1j	81	48.000	Rattus_norvegicus
ENSG00000244395	RBMY1D	97	63.670	ENSRBIG00000029066	-	100	63.670	Rhinopithecus_bieti
ENSG00000244395	RBMY1D	90	91.781	ENSRBIG00000007617	-	99	78.498	Rhinopithecus_bieti
ENSG00000244395	RBMY1D	90	91.781	ENSRROG00000029740	-	99	80.205	Rhinopithecus_roxellana

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component