EuRBPDB

Description

Ensembl ID: ENSG00000248167 (Gene tree)
Gene ID: 202658
Gene Symbol: TRIM39-RPP21
Alias: -
Full Name: TRIM39-RPP21 readthrough
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Plus strand
Length: 17,952 bases
Position: chr6:30,328,907-30,346,858
Accession: 38845
RBP type: canonical RBP
Summary: This locus represents naturally occurring read-through transcription between the neighboring TRIM39 (tripartite motif-containing 39) and RPP21 (ribonuclease P/MRP 21kDa subunit) genes on chromosome 6. The read-through transcript encodes a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Nov 2010]

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000485378	Rpr2	PF04032.16	5.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000623385	TRIM39-RPP21-201	1698	-	ENSP00000485378	503 (aa)	-	A0A096LP39

Gene Model

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000248167	Body Height	8.0750000E-007	-
ENSG00000248167	Body Height	1.1710000E-006	-
ENSG00000248167	Body Height	3.9380000E-005	-
ENSG00000248167	Body Height	4.2640000E-005	-
ENSG00000248167	Trans Fatty Acids	5E-6	25646338
ENSG00000248167	Lupus Erythematosus, Cutaneous	2E-11	25827949

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000248167	rs6986	6	30345563	C	Neuroticism	29255261	z score increase	5.76	EFO_0007660
ENSG00000248167	rs9261659	6	30338176	?	Shingles	28928442	[0.11-0.2] unit decrease	0.1554	EFO_0008401
ENSG00000248167	rs3094067	6	30331468	G	Cutaneous lupus erythematosus	25827949	[1.68-3.20]	2.32	EFO_0003834
ENSG00000248167	rs6986	6	30345563	C	Trans fatty acid levels	25646338	[0.0046-0.0112] unit decrease	0.0079	EFO_0006821\|EFO_0006822
ENSG00000248167	rs6986	6	30345563	C	Feeling guilty	29500382	z score increase	7.25	EFO_0009595
ENSG00000248167	rs6986	6	30345563	C	Neurociticism	29500382	z score increase	6.16	EFO_0007660

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000248167	TRIM39-RPP21	100	95.825	ENSCAFG00020017552	TRIM39-RPP21	100	95.825	Canis_lupus_dingo
ENSG00000248167	TRIM39-RPP21	100	99.205	ENSCANG00000028141	TRIM39-RPP21	100	99.205	Colobus_angolensis_palliatus
ENSG00000248167	TRIM39-RPP21	100	99.457	ENSECAG00000015974	TRIM39-RPP21	87	99.457	Equus_caballus
ENSG00000248167	TRIM39-RPP21	100	95.248	ENSMICG00000004749	TRIM39-RPP21	100	95.050	Microcebus_murinus
ENSG00000248167	TRIM39-RPP21	83	89.157	ENSMLUG00000015705	TRIM39-RPP21	100	89.157	Myotis_lucifugus
ENSG00000248167	TRIM39-RPP21	94	97.458	ENSOCUG00000014141	TRIM39-RPP21	55	97.458	Oryctolagus_cuniculus
ENSG00000248167	TRIM39-RPP21	80	87.562	ENSSHAG00000005422	TRIM39-RPP21	100	87.562	Sarcophilus_harrisii
ENSG00000248167	TRIM39-RPP21	100	95.825	ENSVVUG00000009510	TRIM39-RPP21	100	95.825	Vulpes_vulpes