EuRBPDB

Description

RBDs

Transcripts

Gene Model

Phenotypes

GWAS

PPI

Orthologs

Description

Ensembl ID: ENSG00000248919 (Gene tree)
Gene ID: 100526740
Gene Symbol: ATP5MF-PTCD1
Alias: ATP5J2-PTCD1
Full Name: ATP5MF-PTCD1 readthrough
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 49,463 bases
Position: chr7:99,416,739-99,466,201
Accession: 38844
RBP type: canonical RBP
Summary: This locus represents naturally occurring read-through transcription between the ATP5J2 (ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2) and PTCD1 (pentatricopeptide repeat domain 1) genes on chromosome 7. The read-through transcript encodes a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Nov 2010]

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000400168	PPR	PF01535.20	1.1e-14	1	2
ENSP00000400168	PPR	PF01535.20	1.1e-14	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000451138	ATP5MF-PTCD1-203	331	-	ENSP00000416954	54 (aa)	-	C9JJT5
ENST00000413834	ATP5MF-PTCD1-201	2491	-	ENSP00000400168	749 (aa)	-	G3V325
ENST00000437572	ATP5MF-PTCD1-202	544	-	-	- (aa)	-	-

Gene Model

Click here to download ENSG00000248919's gene model file

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000248919	Blood Pressure	2.1560000E-005	-
ENSG00000248919	Blood Pressure	4.1160000E-005	-

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000248919	rs13243267	7	99455691	?	Serum metabolite levels	23093944	[NR] unit decrease	0.1191	EFO_0005653
ENSG00000248919	rs2293256	7	99460078	?	Serum metabolite levels	23093944	[NR] unit decrease	0.2122	EFO_0005653
ENSG00000248919	rs883403	7	99450355	T	Smoking status (ever vs never smokers)	30643258	[0.012-0.023] unit increase	0.017332198	EFO_0004318
ENSG00000248919	rs10215854	7	99439297	?	White blood cell count	30595370			EFO_0004308

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000248919's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000248919	ATP5MF-PTCD1	75	45.709	ENSAPOG00000010679	ptcd1	85	46.237	Acanthochromis_polyacanthus
ENSG00000248919	ATP5MF-PTCD1	99	77.045	ENSAMEG00000006224	-	99	76.913	Ailuropoda_melanoleuca
ENSG00000248919	ATP5MF-PTCD1	79	48.350	ENSACIG00000017861	ptcd1	85	48.264	Amphilophus_citrinellus
ENSG00000248919	ATP5MF-PTCD1	82	45.367	ENSAOCG00000022617	ptcd1	81	48.029	Amphiprion_ocellaris
ENSG00000248919	ATP5MF-PTCD1	86	46.024	ENSAOCG00000020741	-	81	48.635	Amphiprion_ocellaris
ENSG00000248919	ATP5MF-PTCD1	90	44.868	ENSAPEG00000022632	ptcd1	84	47.308	Amphiprion_percula
ENSG00000248919	ATP5MF-PTCD1	78	49.497	ENSATEG00000007016	ptcd1	80	49.743	Anabas_testudineus
ENSG00000248919	ATP5MF-PTCD1	79	60.606	ENSAPLG00000006862	-	93	60.606	Anas_platyrhynchos
ENSG00000248919	ATP5MF-PTCD1	99	54.206	ENSACAG00000012871	-	98	54.072	Anolis_carolinensis
ENSG00000248919	ATP5MF-PTCD1	91	88.792	ENSANAG00000035790	-	100	88.792	Aotus_nancymaae
ENSG00000248919	ATP5MF-PTCD1	78	49.233	ENSACLG00000002824	ptcd1	80	48.480	Astatotilapia_calliptera
ENSG00000248919	ATP5MF-PTCD1	82	47.188	ENSAMXG00000037292	ptcd1	91	46.799	Astyanax_mexicanus
ENSG00000248919	ATP5MF-PTCD1	94	77.369	ENSBTAG00000020440	-	87	77.652	Bos_taurus
ENSG00000248919	ATP5MF-PTCD1	93	88.905	ENSCJAG00000015815	-	100	88.905	Callithrix_jacchus
ENSG00000248919	ATP5MF-PTCD1	99	76.494	ENSCAFG00000015055	-	99	76.361	Canis_familiaris
ENSG00000248919	ATP5MF-PTCD1	94	76.620	ENSCAFG00020014480	-	94	76.479	Canis_lupus_dingo
ENSG00000248919	ATP5MF-PTCD1	93	76.705	ENSCHIG00000027000	-	99	76.989	Capra_hircus
ENSG00000248919	ATP5MF-PTCD1	93	79.915	ENSTSYG00000029495	-	100	79.774	Carlito_syrichta
ENSG00000248919	ATP5MF-PTCD1	87	74.355	ENSCAPG00000014660	-	99	74.203	Cavia_aperea
ENSG00000248919	ATP5MF-PTCD1	93	73.625	ENSCPOG00000001780	-	100	73.484	Cavia_porcellus
ENSG00000248919	ATP5MF-PTCD1	93	87.216	ENSCCAG00000034025	-	100	87.216	Cebus_capucinus
ENSG00000248919	ATP5MF-PTCD1	93	93.581	ENSCATG00000040859	-	100	93.581	Cercocebus_atys
ENSG00000248919	ATP5MF-PTCD1	92	76.934	ENSCLAG00000006354	-	100	76.023	Chinchilla_lanigera
ENSG00000248919	ATP5MF-PTCD1	85	93.916	ENSCSAG00000017794	-	95	93.760	Chlorocebus_sabaeus
ENSG00000248919	ATP5MF-PTCD1	90	54.047	ENSCPBG00000020866	-	97	54.184	Chrysemys_picta_bellii
ENSG00000248919	ATP5MF-PTCD1	77	31.588	ENSCING00000007717	-	97	31.695	Ciona_intestinalis
ENSG00000248919	ATP5MF-PTCD1	93	92.867	ENSCANG00000023441	-	100	92.867	Colobus_angolensis_palliatus
ENSG00000248919	ATP5MF-PTCD1	93	73.400	ENSCGRG00001023686	Ptcd1	100	73.400	Cricetulus_griseus_chok1gshd
ENSG00000248919	ATP5MF-PTCD1	93	73.126	ENSCGRG00000015031	Ptcd1	100	73.126	Cricetulus_griseus_crigri
ENSG00000248919	ATP5MF-PTCD1	78	47.906	ENSCSEG00000002378	ptcd1	80	48.305	Cynoglossus_semilaevis
ENSG00000248919	ATP5MF-PTCD1	78	47.412	ENSCVAG00000015826	ptcd1	81	47.315	Cyprinodon_variegatus
ENSG00000248919	ATP5MF-PTCD1	80	46.732	ENSCVAG00000003621	ptcd1	88	46.634	Cyprinodon_variegatus
ENSG00000248919	ATP5MF-PTCD1	94	45.631	ENSDARG00000076176	ptcd1	99	45.631	Danio_rerio
ENSG00000248919	ATP5MF-PTCD1	93	73.174	ENSDNOG00000009957	-	100	73.455	Dasypus_novemcinctus
ENSG00000248919	ATP5MF-PTCD1	92	73.381	ENSDORG00000000740	Ptcd1	99	73.381	Dipodomys_ordii
ENSG00000248919	ATP5MF-PTCD1	84	41.033	ENSEBUG00000014515	ptcd1	99	41.833	Eptatretus_burgeri
ENSG00000248919	ATP5MF-PTCD1	93	79.213	ENSEASG00005002480	-	100	79.073	Equus_asinus_asinus
ENSG00000248919	ATP5MF-PTCD1	93	79.213	ENSECAG00000016617	-	100	79.073	Equus_caballus
ENSG00000248919	ATP5MF-PTCD1	78	46.955	ENSELUG00000016517	ptcd1	82	46.945	Esox_lucius
ENSG00000248919	ATP5MF-PTCD1	93	76.695	ENSFCAG00000015069	-	100	76.554	Felis_catus
ENSG00000248919	ATP5MF-PTCD1	87	57.965	ENSFALG00000013803	-	92	59.077	Ficedula_albicollis
ENSG00000248919	ATP5MF-PTCD1	93	75.921	ENSFDAG00000006393	-	100	75.779	Fukomys_damarensis
ENSG00000248919	ATP5MF-PTCD1	73	45.552	ENSFHEG00000012491	ptcd1	92	45.552	Fundulus_heteroclitus
ENSG00000248919	ATP5MF-PTCD1	77	48.700	ENSGMOG00000007639	ptcd1	91	48.700	Gadus_morhua
ENSG00000248919	ATP5MF-PTCD1	81	59.076	ENSGALG00000004711	-	98	55.447	Gallus_gallus
ENSG00000248919	ATP5MF-PTCD1	80	46.721	ENSGAFG00000013175	ptcd1	85	46.721	Gambusia_affinis
ENSG00000248919	ATP5MF-PTCD1	80	48.849	ENSGACG00000016607	ptcd1	89	49.744	Gasterosteus_aculeatus
ENSG00000248919	ATP5MF-PTCD1	86	54.273	ENSGAGG00000021832	-	99	54.573	Gopherus_agassizii
ENSG00000248919	ATP5MF-PTCD1	93	98.426	ENSGGOG00000015123	-	99	98.426	Gorilla_gorilla
ENSG00000248919	ATP5MF-PTCD1	78	49.063	ENSHBUG00000018275	ptcd1	80	48.976	Haplochromis_burtoni
ENSG00000248919	ATP5MF-PTCD1	93	76.662	ENSHGLG00000017621	-	100	76.521	Heterocephalus_glaber_female
ENSG00000248919	ATP5MF-PTCD1	93	76.662	ENSHGLG00100007218	-	100	76.521	Heterocephalus_glaber_male
ENSG00000248919	ATP5MF-PTCD1	78	47.521	ENSHCOG00000010784	ptcd1	82	47.766	Hippocampus_comes
ENSG00000248919	ATP5MF-PTCD1	93	74.017	ENSSTOG00000001682	-	100	73.876	Ictidomys_tridecemlineatus
ENSG00000248919	ATP5MF-PTCD1	93	72.727	ENSJJAG00000000319	Ptcd1	100	72.727	Jaculus_jaculus
ENSG00000248919	ATP5MF-PTCD1	78	47.466	ENSKMAG00000008708	ptcd1	80	47.377	Kryptolebias_marmoratus
ENSG00000248919	ATP5MF-PTCD1	81	47.826	ENSLBEG00000008061	ptcd1	83	48.203	Labrus_bergylta
ENSG00000248919	ATP5MF-PTCD1	82	58.039	ENSLACG00000011172	ptcd1	86	58.333	Latimeria_chalumnae
ENSG00000248919	ATP5MF-PTCD1	80	54.366	ENSLOCG00000004833	ptcd1	93	54.849	Lepisosteus_oculatus
ENSG00000248919	ATP5MF-PTCD1	93	70.968	ENSLAFG00000002588	-	100	70.968	Loxodonta_africana
ENSG00000248919	ATP5MF-PTCD1	93	93.438	ENSMFAG00000041324	-	100	93.438	Macaca_fascicularis
ENSG00000248919	ATP5MF-PTCD1	100	93.600	ENSMMUG00000030408	-	100	93.600	Macaca_mulatta
ENSG00000248919	ATP5MF-PTCD1	93	93.438	ENSMNEG00000043786	-	100	93.438	Macaca_nemestrina
ENSG00000248919	ATP5MF-PTCD1	93	71.327	ENSMLEG00000031179	-	100	73.466	Mandrillus_leucophaeus
ENSG00000248919	ATP5MF-PTCD1	84	48.571	ENSMAMG00000007623	ptcd1	85	48.571	Mastacembelus_armatus
ENSG00000248919	ATP5MF-PTCD1	81	47.164	ENSMZEG00005012722	ptcd1	83	47.078	Maylandia_zebra
ENSG00000248919	ATP5MF-PTCD1	99	55.963	ENSMGAG00000004211	-	99	56.094	Meleagris_gallopavo
ENSG00000248919	ATP5MF-PTCD1	93	77.151	ENSMICG00000017428	-	100	77.606	Microcebus_murinus
ENSG00000248919	ATP5MF-PTCD1	84	45.639	ENSMMOG00000020243	ptcd1	88	47.700	Mola_mola
ENSG00000248919	ATP5MF-PTCD1	92	58.436	ENSMODG00000001350	-	99	58.436	Monodelphis_domestica
ENSG00000248919	ATP5MF-PTCD1	78	50.084	ENSMALG00000018442	ptcd1	80	49.412	Monopterus_albus
ENSG00000248919	ATP5MF-PTCD1	92	74.170	MGP_CAROLIEiJ_G0028011	Ptcd1	99	74.170	Mus_caroli
ENSG00000248919	ATP5MF-PTCD1	92	73.882	ENSMUSG00000029624	Ptcd1	99	73.882	Mus_musculus
ENSG00000248919	ATP5MF-PTCD1	92	74.315	MGP_PahariEiJ_G0024580	Ptcd1	99	74.315	Mus_pahari
ENSG00000248919	ATP5MF-PTCD1	92	74.170	MGP_SPRETEiJ_G0029012	Ptcd1	99	74.170	Mus_spretus
ENSG00000248919	ATP5MF-PTCD1	93	75.530	ENSMPUG00000016518	-	100	75.389	Mustela_putorius_furo
ENSG00000248919	ATP5MF-PTCD1	99	78.175	ENSMLUG00000010994	-	100	78.042	Myotis_lucifugus
ENSG00000248919	ATP5MF-PTCD1	79	48.339	ENSNBRG00000010079	ptcd1	84	48.247	Neolamprologus_brichardi
ENSG00000248919	ATP5MF-PTCD1	93	92.612	ENSNLEG00000011060	-	100	92.612	Nomascus_leucogenys
ENSG00000248919	ATP5MF-PTCD1	91	62.518	ENSMEUG00000006930	-	99	62.518	Notamacropus_eugenii
ENSG00000248919	ATP5MF-PTCD1	83	76.815	ENSOPRG00000013647	-	89	76.815	Ochotona_princeps
ENSG00000248919	ATP5MF-PTCD1	78	46.880	ENSONIG00000003168	ptcd1	95	46.791	Oreochromis_niloticus
ENSG00000248919	ATP5MF-PTCD1	75	57.549	ENSOANG00000007728	-	73	57.838	Ornithorhynchus_anatinus
ENSG00000248919	ATP5MF-PTCD1	92	73.571	ENSOCUG00000010584	-	97	73.429	Oryctolagus_cuniculus
ENSG00000248919	ATP5MF-PTCD1	80	47.776	ENSORLG00000009275	ptcd1	85	47.848	Oryzias_latipes
ENSG00000248919	ATP5MF-PTCD1	80	47.282	ENSORLG00020000988	ptcd1	85	47.351	Oryzias_latipes_hni
ENSG00000248919	ATP5MF-PTCD1	79	47.360	ENSORLG00015010557	ptcd1	85	47.430	Oryzias_latipes_hsok
ENSG00000248919	ATP5MF-PTCD1	81	47.471	ENSOMEG00000020627	ptcd1	88	47.783	Oryzias_melastigma
ENSG00000248919	ATP5MF-PTCD1	92	75.286	ENSOGAG00000010877	-	100	75.143	Otolemur_garnettii
ENSG00000248919	ATP5MF-PTCD1	93	72.766	ENSOARG00000018676	-	100	73.050	Ovis_aries
ENSG00000248919	ATP5MF-PTCD1	93	98.429	ENSPPAG00000036024	-	100	98.429	Pan_paniscus
ENSG00000248919	ATP5MF-PTCD1	93	76.879	ENSPPRG00000003478	-	100	76.738	Panthera_pardus
ENSG00000248919	ATP5MF-PTCD1	93	98.429	ENSPTRG00000019452	-	100	98.429	Pan_troglodytes
ENSG00000248919	ATP5MF-PTCD1	93	93.438	ENSPANG00000016730	-	100	93.438	Papio_anubis
ENSG00000248919	ATP5MF-PTCD1	90	48.830	ENSPKIG00000014215	ptcd1	97	48.763	Paramormyrops_kingsleyae
ENSG00000248919	ATP5MF-PTCD1	79	57.973	ENSPSIG00000011184	-	100	58.472	Pelodiscus_sinensis
ENSG00000248919	ATP5MF-PTCD1	68	41.333	ENSPMAG00000009667	ptcd1	99	41.333	Petromyzon_marinus
ENSG00000248919	ATP5MF-PTCD1	93	58.457	ENSPCIG00000024778	-	99	58.457	Phascolarctos_cinereus
ENSG00000248919	ATP5MF-PTCD1	80	45.677	ENSPFOG00000004458	ptcd1	82	46.812	Poecilia_formosa
ENSG00000248919	ATP5MF-PTCD1	80	45.990	ENSPLAG00000011051	ptcd1	85	46.645	Poecilia_latipinna
ENSG00000248919	ATP5MF-PTCD1	78	46.578	ENSPMEG00000020547	ptcd1	85	45.120	Poecilia_mexicana
ENSG00000248919	ATP5MF-PTCD1	79	46.777	ENSPREG00000000059	ptcd1	84	46.777	Poecilia_reticulata
ENSG00000248919	ATP5MF-PTCD1	88	96.979	ENSPPYG00000017377	-	100	96.979	Pongo_abelii
ENSG00000248919	ATP5MF-PTCD1	76	72.644	ENSPCAG00000001852	-	88	72.644	Procavia_capensis
ENSG00000248919	ATP5MF-PTCD1	92	78.602	ENSPCOG00000018596	-	99	78.917	Propithecus_coquereli
ENSG00000248919	ATP5MF-PTCD1	63	88.000	ENSPVAG00000007529	-	72	88.000	Pteropus_vampyrus
ENSG00000248919	ATP5MF-PTCD1	78	48.893	ENSPNYG00000019993	ptcd1	80	48.805	Pundamilia_nyererei
ENSG00000248919	ATP5MF-PTCD1	86	49.924	ENSPNAG00000014931	ptcd1	93	49.618	Pygocentrus_nattereri
ENSG00000248919	ATP5MF-PTCD1	92	73.304	ENSRNOG00000000987	Ptcd1	98	73.799	Rattus_norvegicus
ENSG00000248919	ATP5MF-PTCD1	93	93.295	ENSRBIG00000043393	-	100	93.295	Rhinopithecus_bieti
ENSG00000248919	ATP5MF-PTCD1	93	93.153	ENSRROG00000036420	-	100	93.153	Rhinopithecus_roxellana
ENSG00000248919	ATP5MF-PTCD1	93	88.319	ENSSBOG00000024114	-	100	88.319	Saimiri_boliviensis_boliviensis
ENSG00000248919	ATP5MF-PTCD1	86	61.728	ENSSHAG00000011376	-	99	61.728	Sarcophilus_harrisii
ENSG00000248919	ATP5MF-PTCD1	79	53.871	ENSSFOG00015007909	ptcd1	81	54.295	Scleropages_formosus
ENSG00000248919	ATP5MF-PTCD1	81	46.141	ENSSMAG00000000218	ptcd1	94	46.440	Scophthalmus_maximus
ENSG00000248919	ATP5MF-PTCD1	82	46.975	ENSSDUG00000015671	ptcd1	86	47.164	Seriola_dumerili
ENSG00000248919	ATP5MF-PTCD1	82	46.975	ENSSLDG00000014261	ptcd1	86	46.955	Seriola_lalandi_dorsalis
ENSG00000248919	ATP5MF-PTCD1	92	52.789	ENSSPUG00000003540	-	84	58.517	Sphenodon_punctatus
ENSG00000248919	ATP5MF-PTCD1	78	49.249	ENSSPAG00000011049	ptcd1	80	49.327	Stegastes_partitus
ENSG00000248919	ATP5MF-PTCD1	87	77.948	ENSSSCG00000007622	-	99	77.410	Sus_scrofa
ENSG00000248919	ATP5MF-PTCD1	82	60.359	ENSTGUG00000007563	-	99	61.258	Taeniopygia_guttata
ENSG00000248919	ATP5MF-PTCD1	81	47.742	ENSTRUG00000013471	ptcd1	79	48.562	Takifugu_rubripes
ENSG00000248919	ATP5MF-PTCD1	78	48.993	ENSTNIG00000008271	ptcd1	83	49.236	Tetraodon_nigroviridis
ENSG00000248919	ATP5MF-PTCD1	93	74.194	ENSTBEG00000011021	-	100	74.053	Tupaia_belangeri
ENSG00000248919	ATP5MF-PTCD1	93	74.716	ENSTTRG00000003006	-	100	74.716	Tursiops_truncatus
ENSG00000248919	ATP5MF-PTCD1	93	76.901	ENSUAMG00000008049	-	100	76.761	Ursus_americanus
ENSG00000248919	ATP5MF-PTCD1	93	76.420	ENSVVUG00000008836	-	100	76.278	Vulpes_vulpes
ENSG00000248919	ATP5MF-PTCD1	81	52.310	ENSXETG00000009891	ptcd1	88	52.138	Xenopus_tropicalis
ENSG00000248919	ATP5MF-PTCD1	80	47.039	ENSXMAG00000015540	ptcd1	84	47.204	Xiphophorus_maculatus