EuRBPDB

Description

RBPome

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000265808 (Gene tree)
Gene ID: 9554
Gene Symbol: SEC22B
Alias: sec22b|ERS-24|SEC22L1
Full Name: SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 25,624 bases
Position: chr1:120,150,898-120,176,521
Accession: 10700
RBP type: non-canonical RBP
Summary: The protein encoded by this gene is a member of the SEC22 family of vesicle trafficking proteins. It seems to complex with SNARE and it is thought to play a role in the ER-Golgi protein trafficking. This protein has strong similarity to Mus musculus and Cricetulus griseus proteins.[provided by RefSeq, Sep 2009]

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000618538	SEC22B-202	2230	-	ENSP00000484017	79 (aa)	-	A0A087X1A9
ENST00000578049	SEC22B-201	6922	XM_017002856	ENSP00000463393	215 (aa)	XP_016858345	O75396

Gene Model

Click here to download ENSG00000265808's gene model file

Pathways

Pathway ID	Pathway Name	Source
hsa04130	SNARE interactions in vesicular transport	KEGG
hsa04145	Phagosome	KEGG
hsa05134	Legionellosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000265808's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000265808	SEC22B	100	100.000	ENSMUSG00000027879	Sec22b	100	100.000	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000139	Golgi membrane	21873635.	IBA	Component
GO:0000139	Golgi membrane	-	TAS	Component
GO:0002479	antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent	-	TAS	Process
GO:0005484	SNAP receptor activity	21873635.	IBA	Function
GO:0005515	protein binding	15272311.16354670.17499046.19369418.22153078.	IPI	Function
GO:0005783	endoplasmic reticulum	21873635.	IBA	Component
GO:0005789	endoplasmic reticulum membrane	21873635.	IBA	Component
GO:0005789	endoplasmic reticulum membrane	-	TAS	Component
GO:0005793	endoplasmic reticulum-Golgi intermediate compartment	21873635.	IBA	Component
GO:0005793	endoplasmic reticulum-Golgi intermediate compartment	15308636.	IDA	Component
GO:0006888	ER to Golgi vesicle-mediated transport	21873635.	IBA	Process
GO:0006888	ER to Golgi vesicle-mediated transport	-	TAS	Process
GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	21873635.	IBA	Process
GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	-	TAS	Process
GO:0008021	synaptic vesicle	-	IEA	Component
GO:0012507	ER to Golgi transport vesicle membrane	21873635.	IBA	Component
GO:0012507	ER to Golgi transport vesicle membrane	17499046.	IDA	Component
GO:0012507	ER to Golgi transport vesicle membrane	-	TAS	Component
GO:0015031	protein transport	-	IEA	Process
GO:0016021	integral component of membrane	-	IEA	Component
GO:0019905	syntaxin binding	-	IEA	Function
GO:0030133	transport vesicle	-	TAS	Component
GO:0030670	phagocytic vesicle membrane	-	TAS	Component
GO:0031201	SNARE complex	21873635.	IBA	Component
GO:0033116	endoplasmic reticulum-Golgi intermediate compartment membrane	-	TAS	Component
GO:0042470	melanosome	-	IEA	Component
GO:0045732	positive regulation of protein catabolic process	21242315.	IMP	Process
GO:0048208	COPII vesicle coating	-	TAS	Process
GO:0048280	vesicle fusion with Golgi apparatus	21873635.	IBA	Process
GO:1902902	negative regulation of autophagosome assembly	21242315.	IMP	Process
GO:1990668	vesicle fusion with endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane	-	TAS	Process