EuRBPDB

Description

Ensembl ID: ENSG00000274523 (Gene tree)
Gene ID: 81554
Gene Symbol: RCC1L
Alias: WBSCR16
Full Name: RCC1 like
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 47,110 bases
Position: chr7:75,027,119-75,074,228
Accession: 14948
RBP type: non-canonical RBP
Summary: This gene encodes a protein containing regulator of chromosome condensation 1-like repeats. The encoded protein may function as a guanine nucleotide exchange factor. This gene is located in a region of chromosome 7 that is deleted in Williams-Beuren syndrome, a multisystem developmental disorder. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
22681889	The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts	4SURIC & HEK293	2012 May	Baltz AG	DOI: 10.1016/j.molcel.2012.05.021
29431736	Capturing the interactome of newly transcribed RNA	RIC & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
22658674	Insights into RNA biology from an atlas of mammalian mRNA-binding proteins	RIC & Hela	2012 May 31	Castello A	DOI: 10.1016/j.cell.2012.04.031
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000615250	RCC1L-203	592	-	ENSP00000477558	153 (aa)	-	A0A087WT38
ENST00000618035	RCC1L-205	1409	-	ENSP00000480781	358 (aa)	-	Q96I51
ENST00000616051	RCC1L-204	1610	-	-	- (aa)	-	-
ENST00000614461	RCC1L-202	2419	-	ENSP00000477659	454 (aa)	-	Q96I51
ENST00000618102	RCC1L-206	950	-	-	- (aa)	-	-
ENST00000610322	RCC1L-201	2300	XM_024446944	ENSP00000480364	464 (aa)	-	Q96I51

Gene Model

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	22658674.22681889.	HDA	Function
GO:0005085	guanyl-nucleotide exchange factor activity	28746876.	IDA	Function
GO:0005515	protein binding	21988832.27499296.28746876.	IPI	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005743	mitochondrial inner membrane	-	IEA	Component
GO:0019843	rRNA binding	27667664.	IDA	Function
GO:0031966	mitochondrial membrane	27667664.28608466.28746876.	IDA	Component
GO:0070131	positive regulation of mitochondrial translation	27667664.	IMP	Process
GO:1990613	mitochondrial membrane fusion	28746876.	IMP	Process