EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • PRI
  • Literatures
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000278053 (Gene tree)
Gene ID
11056
Gene Symbol
DDX52
Alias
ROK1
Full Name
DExD-box helicase 52
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
33,726 bases
Position
chr17:37,609,739-37,643,464
Accession
20038
RBP type
canonical RBP
Summary
(DExD-Box Helicase 52) is a Protein Coding gene. Diseases associated with DDX52 include Chromosome 17Q12 Deletion Syndrome. Among its related pathways are rRNA processing in the nucleus and cytosol and Gene Expression. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and hydrolase activity. An important paralog of this gene is DDX59.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000479504ResIIIPF04851.150.0002411
ENSP00000479504DEADPF00270.297.7e-3711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8
Protein-RNA interaction(RNA-Binding Site)
Click here to download all RNA binding sites
Click here to download all RNA binding sites

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
10373593ATP hydrolysis activity of the DEAD box protein Rok1p is required for in vivo ROK1 function.Nucleic Acids Res1999 Jul 1Oh JY-
24947498A pre-ribosomal RNA interaction network involving snoRNAs and the Rok1 helicase.RNA2014 AugMartin Rdoi: 10.1261/rna.044669.114
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000620209DDX52-2153123-ENSP00000483141112 (aa)-A0A087X069
ENST00000619418DDX52-2141872--- (aa)--
ENST00000617633DDX52-2136362XM_011524232ENSP00000479504599 (aa)XP_011522534Q9Y2R4
ENST00000614307DDX52-2113550--- (aa)--
ENST00000612255DDX52-2092027-ENSP0000048436697 (aa)-A0A087X1P7
ENST00000622140DDX52-216572--- (aa)--
ENST00000613633DDX52-210776-ENSP00000477779101 (aa)-A0A087WTD6
ENST00000616646DDX52-2122951-ENSP00000483836115 (aa)-A0A087X121
Gene Model
Click here to download ENSG00000278053's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000278053rs1493266351737624735CMacrophage inflammatory protein 1b levels27989323[0.16-0.38] SD units decrease0.2697EFO_0008219
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000278053's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000278053DDX527032.045ENSG00000067048DDX3Y6532.045
ENSG00000278053DDX526630.713ENSG00000108654DDX58350.000
ENSG00000278053DDX529933.333ENSG00000118197DDX599533.796
ENSG00000278053DDX526031.781ENSG00000123064DDX548836.923
ENSG00000278053DDX526830.660ENSG00000183258DDX415740.777
ENSG00000278053DDX526330.052ENSG00000157349DDX19B9031.195
ENSG00000278053DDX526533.753ENSG00000198231DDX425433.753
ENSG00000278053DDX526730.216ENSG00000100201DDX175530.340
ENSG00000278053DDX527730.315ENSG00000174243DDX235930.966
ENSG00000278053DDX527732.427ENSG00000080007DDX436833.260
ENSG00000278053DDX525831.909ENSG00000213782DDX477531.909
ENSG00000278053DDX525830.000ENSG00000185163DDX516130.000
ENSG00000278053DDX525730.114ENSG00000168872DDX19A8630.114
ENSG00000278053DDX526634.398ENSG00000152670DDX47530.660
ENSG00000278053DDX526330.933ENSG00000110367DDX67630.933
ENSG00000278053DDX525841.071ENSG00000079785DDX15441.071
ENSG00000278053DDX527232.207ENSG00000184735DDX536632.477
ENSG00000278053DDX525043.103ENSG00000123136DDX39A7530.189
ENSG00000278053DDX525733.146ENSG00000136271DDX569236.364
ENSG00000278053DDX525830.084ENSG00000109832DDX259142.623
ENSG00000278053DDX527432.819ENSG00000215301DDX3X8033.505
ENSG00000278053DDX526531.750ENSG00000088205DDX185532.105
ENSG00000278053DDX525933.521ENSG00000156976EIF4A29030.539
ENSG00000278053DDX526032.312ENSG00000161960EIF4A19731.298
ENSG00000278053DDX525041.379ENSG00000198563DDX39B8030.612
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000278053DDX529860.656ENSAPOG00000008759ddx528760.984Acanthochromis_polyacanthus
ENSG00000278053DDX5210093.155ENSAMEG00000013159DDX5210093.489Ailuropoda_melanoleuca
ENSG00000278053DDX529163.428ENSACIG00000002843ddx529963.914Amphilophus_citrinellus
ENSG00000278053DDX529960.356ENSAOCG00000000356-8760.552Amphiprion_ocellaris
ENSG00000278053DDX529960.356ENSAOCG00000007983ddx529060.272Amphiprion_ocellaris
ENSG00000278053DDX529960.356ENSAPEG00000023456ddx528760.877Amphiprion_percula
ENSG00000278053DDX529661.785ENSATEG00000021525ddx528663.131Anabas_testudineus
ENSG00000278053DDX528376.042ENSACAG00000006395DDX529476.278Anolis_carolinensis
ENSG00000278053DDX529999.123ENSANAG00000028587DDX5210096.494Aotus_nancymaae
ENSG00000278053DDX529760.606ENSACLG00000021447ddx529461.279Astatotilapia_calliptera
ENSG00000278053DDX529663.238ENSAMXG00000024377ddx529962.460Astyanax_mexicanus
ENSG00000278053DDX529994.737ENSBTAG00000010313DDX5210090.985Bos_taurus
ENSG00000278053DDX528939.474WBGene00011032R05D11.49638.235Caenorhabditis_elegans
ENSG00000278053DDX529998.246ENSCJAG00000015190DDX5210095.993Callithrix_jacchus
ENSG00000278053DDX5210093.344ENSCAFG00000018145-10093.344Canis_familiaris
ENSG00000278053DDX5210093.823ENSCAFG00000013554-10093.823Canis_familiaris
ENSG00000278053DDX529794.128ENSCAFG00020003753DDX529894.128Canis_lupus_dingo
ENSG00000278053DDX529993.860ENSCHIG00000006275DDX5210092.943Capra_hircus
ENSG00000278053DDX5210093.322ENSTSYG00000002996DDX5210093.322Carlito_syrichta
ENSG00000278053DDX529974.561ENSCAPG00000010436DDX5210074.549Cavia_aperea
ENSG00000278053DDX5210090.818ENSCPOG00000001232DDX5210090.818Cavia_porcellus
ENSG00000278053DDX5210096.327ENSCCAG00000023213DDX5210096.327Cebus_capucinus
ENSG00000278053DDX5210098.164ENSCATG00000041437DDX5210098.164Cercocebus_atys
ENSG00000278053DDX5210092.321ENSCLAG00000016292DDX5210092.321Chinchilla_lanigera
ENSG00000278053DDX529999.123ENSCSAG00000006122DDX5210097.997Chlorocebus_sabaeus
ENSG00000278053DDX529991.228ENSCHOG00000007413DDX527394.737Choloepus_hoffmanni
ENSG00000278053DDX529673.798ENSCPBG00000009806DDX529872.684Chrysemys_picta_bellii
ENSG00000278053DDX528651.515ENSCING00000016218-10050.522Ciona_intestinalis
ENSG00000278053DDX527757.303ENSCSAVG00000003835-9854.500Ciona_savignyi
ENSG00000278053DDX5210097.830ENSCANG00000035140DDX5210097.830Colobus_angolensis_palliatus
ENSG00000278053DDX529990.351ENSCGRG00001020695Ddx5210089.351Cricetulus_griseus_chok1gshd
ENSG00000278053DDX529990.351ENSCGRG00000008830Ddx5210089.185Cricetulus_griseus_crigri
ENSG00000278053DDX529959.032ENSCSEG00000010008ddx529259.455Cynoglossus_semilaevis
ENSG00000278053DDX529663.731ENSCVAG00000005302ddx529964.116Cyprinodon_variegatus
ENSG00000278053DDX529662.995ENSDARG00000100505ddx529862.729Danio_rerio
ENSG00000278053DDX5210091.362ENSDNOG00000047454DDX5210091.362Dasypus_novemcinctus
ENSG00000278053DDX5210089.649ENSDORG00000004276Ddx5210089.649Dipodomys_ordii
ENSG00000278053DDX527254.756FBgn0036754CG55897653.659Drosophila_melanogaster
ENSG00000278053DDX529890.265ENSETEG00000016042DDX529984.095Echinops_telfairi
ENSG00000278053DDX526441.791ENSEBUG00000010838-9143.073Eptatretus_burgeri
ENSG00000278053DDX529992.617ENSEASG00005011275DDX529292.617Equus_asinus_asinus
ENSG00000278053DDX529995.614ENSECAG00000012286DDX5210093.322Equus_caballus
ENSG00000278053DDX5272100.000ENSEEUG00000001153DDX528089.731Erinaceus_europaeus
ENSG00000278053DDX529162.917ENSELUG00000018002ddx529963.958Esox_lucius
ENSG00000278053DDX529995.614ENSFCAG00000010573DDX5210094.491Felis_catus
ENSG00000278053DDX529872.542ENSFALG00000005155DDX529872.120Ficedula_albicollis
ENSG00000278053DDX5210081.364ENSFDAG00000011133-10081.364Fukomys_damarensis
ENSG00000278053DDX5210090.017ENSFDAG00000008340-10090.017Fukomys_damarensis
ENSG00000278053DDX529761.371ENSFHEG00000017239ddx529162.226Fundulus_heteroclitus
ENSG00000278053DDX529660.764ENSGMOG00000014879ddx529961.285Gadus_morhua
ENSG00000278053DDX529773.595ENSGALG00000005489DDX529772.864Gallus_gallus
ENSG00000278053DDX529961.944ENSGAFG00000000702ddx529561.944Gambusia_affinis
ENSG00000278053DDX529862.034ENSGACG00000020624ddx5210069.538Gasterosteus_aculeatus
ENSG00000278053DDX529672.139ENSGAGG00000007234DDX529671.778Gopherus_agassizii
ENSG00000278053DDX5210099.666ENSGGOG00000028224DDX5210099.666Gorilla_gorilla
ENSG00000278053DDX529759.967ENSHBUG00000015638ddx528960.963Haplochromis_burtoni
ENSG00000278053DDX529891.156ENSHGLG00000006235-9891.156Heterocephalus_glaber_female
ENSG00000278053DDX528875.712ENSHGLG00000019205-9576.938Heterocephalus_glaber_female
ENSG00000278053DDX529084.466ENSHGLG00100013765-8393.333Heterocephalus_glaber_male
ENSG00000278053DDX528875.712ENSHGLG00100018699-9676.938Heterocephalus_glaber_male
ENSG00000278053DDX529761.063ENSHCOG00000007966ddx529661.063Hippocampus_comes
ENSG00000278053DDX529862.729ENSIPUG00000008623ddx529862.895Ictalurus_punctatus
ENSG00000278053DDX525594.526ENSSTOG00000002550DDX529994.526Ictidomys_tridecemlineatus
ENSG00000278053DDX529991.228ENSJJAG00000021877Ddx5210089.850Jaculus_jaculus
ENSG00000278053DDX529762.248ENSKMAG00000022270ddx529675.959Kryptolebias_marmoratus
ENSG00000278053DDX529959.003ENSLBEG00000015403ddx529258.909Labrus_bergylta
ENSG00000278053DDX529671.503ENSLACG00000012514DDX529769.983Latimeria_chalumnae
ENSG00000278053DDX527572.043ENSLOCG00000005928ddx529669.792Lepisosteus_oculatus
ENSG00000278053DDX529293.396ENSLAFG00000002635DDX5210096.667Loxodonta_africana
ENSG00000278053DDX5210098.164ENSMFAG00000000640DDX5210098.164Macaca_fascicularis
ENSG00000278053DDX529999.123ENSMMUG00000002980DDX5210097.830Macaca_mulatta
ENSG00000278053DDX529999.123ENSMNEG00000043658DDX5210097.997Macaca_nemestrina
ENSG00000278053DDX529999.123ENSMLEG00000017518DDX5210097.496Mandrillus_leucophaeus
ENSG00000278053DDX529663.514ENSMAMG00000019719ddx528763.514Mastacembelus_armatus
ENSG00000278053DDX529759.967ENSMZEG00005019044ddx528960.963Maylandia_zebra
ENSG00000278053DDX529175.503ENSMGAG00000008091DDX529674.910Meleagris_gallopavo
ENSG00000278053DDX529990.351ENSMAUG00000021084Ddx5210083.196Mesocricetus_auratus
ENSG00000278053DDX529886.316ENSMICG00000004290-9986.806Microcebus_murinus
ENSG00000278053DDX529992.105ENSMOCG00000009654Ddx5210089.684Microtus_ochrogaster
ENSG00000278053DDX529962.458ENSMMOG00000018825ddx529162.458Mola_mola
ENSG00000278053DDX529982.060ENSMODG00000002493DDX529982.060Monodelphis_domestica
ENSG00000278053DDX527969.068ENSMALG00000007621ddx528169.023Monopterus_albus
ENSG00000278053DDX529989.474MGP_CAROLIEiJ_G0016888Ddx5210088.333Mus_caroli
ENSG00000278053DDX529989.474ENSMUSG00000020677Ddx5210088.333Mus_musculus
ENSG00000278053DDX5210088.500MGP_PahariEiJ_G0018018Ddx5210088.500Mus_pahari
ENSG00000278053DDX5210088.500MGP_SPRETEiJ_G0017733Ddx5210088.500Mus_spretus
ENSG00000278053DDX529994.737ENSMPUG00000015007DDX5210093.322Mustela_putorius_furo
ENSG00000278053DDX528394.792ENSMLUG00000024480-9993.416Myotis_lucifugus
ENSG00000278053DDX529994.737ENSMLUG00000007167-10091.833Myotis_lucifugus
ENSG00000278053DDX5210089.482ENSNGAG00000020686Ddx5210089.482Nannospalax_galili
ENSG00000278053DDX527972.527ENSNBRG00000007750ddx529266.151Neolamprologus_brichardi
ENSG00000278053DDX5210097.830ENSNLEG00000002826DDX5210097.830Nomascus_leucogenys
ENSG00000278053DDX529581.651ENSMEUG00000011234DDX529890.331Notamacropus_eugenii
ENSG00000278053DDX5210080.066ENSOPRG00000003899DDX5210080.731Ochotona_princeps
ENSG00000278053DDX529989.474ENSODEG00000002857-9984.317Octodon_degus
ENSG00000278053DDX529786.747ENSODEG00000012814-10086.747Octodon_degus
ENSG00000278053DDX529761.681ENSONIG00000004869ddx529561.849Oreochromis_niloticus
ENSG00000278053DDX529980.172ENSOANG00000007133DDX529877.853Ornithorhynchus_anatinus
ENSG00000278053DDX5210090.818ENSOCUG00000014532DDX5210090.818Oryctolagus_cuniculus
ENSG00000278053DDX529563.077ENSORLG00000005241ddx529261.513Oryzias_latipes
ENSG00000278053DDX529562.628ENSORLG00015015546ddx528862.167Oryzias_latipes_hsok
ENSG00000278053DDX529960.956ENSOMEG00000017602ddx529261.221Oryzias_melastigma
ENSG00000278053DDX529789.365ENSOGAG00000000868DDX529989.365Otolemur_garnettii
ENSG00000278053DDX529993.860ENSOARG00000002998DDX5210092.321Ovis_aries
ENSG00000278053DDX5299100.000ENSPPAG00000028453DDX5210097.663Pan_paniscus
ENSG00000278053DDX529995.614ENSPPRG00000009742DDX5210092.654Panthera_pardus
ENSG00000278053DDX529995.614ENSPTIG00000013697DDX5210092.487Panthera_tigris_altaica
ENSG00000278053DDX5210099.499ENSPTRG00000009058DDX5210099.499Pan_troglodytes
ENSG00000278053DDX529999.123ENSPANG00000022101DDX5210097.830Papio_anubis
ENSG00000278053DDX529864.068ENSPKIG00000013058ddx529864.068Paramormyrops_kingsleyae
ENSG00000278053DDX529674.144ENSPSIG00000010226DDX529873.544Pelodiscus_sinensis
ENSG00000278053DDX527968.143ENSPMGG00000005458ddx529567.511Periophthalmus_magnuspinnatus
ENSG00000278053DDX529990.351ENSPEMG00000003263Ddx5210088.852Peromyscus_maniculatus_bairdii
ENSG00000278053DDX529981.095ENSPCIG00000017730DDX529181.260Phascolarctos_cinereus
ENSG00000278053DDX529662.351ENSPFOG00000018378ddx529261.450Poecilia_formosa
ENSG00000278053DDX529662.351ENSPLAG00000008368ddx529261.450Poecilia_latipinna
ENSG00000278053DDX529663.058ENSPMEG00000002359ddx529262.126Poecilia_mexicana
ENSG00000278053DDX529663.058ENSPREG00000016874ddx529262.167Poecilia_reticulata
ENSG00000278053DDX5210098.333ENSPPYG00000008221DDX5210098.333Pongo_abelii
ENSG00000278053DDX529880.339ENSPCAG00000005814DDX529980.339Procavia_capensis
ENSG00000278053DDX5210092.154ENSPVAG00000010462DDX5210092.154Pteropus_vampyrus
ENSG00000278053DDX529761.235ENSPNYG00000020730ddx529661.790Pundamilia_nyererei
ENSG00000278053DDX529662.838ENSPNAG00000014707ddx529661.794Pygocentrus_nattereri
ENSG00000278053DDX529990.351ENSRNOG00000002612Ddx5210087.833Rattus_norvegicus
ENSG00000278053DDX529999.123ENSRBIG00000032462DDX5210090.150Rhinopithecus_bieti
ENSG00000278053DDX529999.123ENSRROG00000034760DDX5210091.152Rhinopithecus_roxellana
ENSG00000278053DDX529839.934YGL171W-9939.216Saccharomyces_cerevisiae
ENSG00000278053DDX5210095.492ENSSBOG00000035787DDX5210095.492Saimiri_boliviensis_boliviensis
ENSG00000278053DDX529981.924ENSSHAG00000013962DDX529782.060Sarcophilus_harrisii
ENSG00000278053DDX529765.180ENSSFOG00015005055ddx529965.523Scleropages_formosus
ENSG00000278053DDX529659.603ENSSMAG00000009788ddx529260.709Scophthalmus_maximus
ENSG00000278053DDX529661.913ENSSDUG00000004022ddx529361.264Seriola_dumerili
ENSG00000278053DDX529662.290ENSSLDG00000016999ddx528768.663Seriola_lalandi_dorsalis
ENSG00000278053DDX529965.789ENSSARG00000000371-8378.421Sorex_araneus
ENSG00000278053DDX529671.973ENSSPUG00000000720DDX529870.654Sphenodon_punctatus
ENSG00000278053DDX529660.891ENSSPAG00000014211ddx528761.165Stegastes_partitus
ENSG00000278053DDX5210092.321ENSSSCG00000021275DDX5210092.321Sus_scrofa
ENSG00000278053DDX529772.743ENSTGUG00000008303-10072.743Taeniopygia_guttata
ENSG00000278053DDX529862.333ENSTRUG00000017071ddx528662.810Takifugu_rubripes
ENSG00000278053DDX529962.982ENSTNIG00000009990ddx529962.982Tetraodon_nigroviridis
ENSG00000278053DDX5210067.961ENSTBEG00000005982DDX527686.806Tupaia_belangeri
ENSG00000278053DDX529994.737ENSTTRG00000008917DDX5210092.988Tursiops_truncatus
ENSG00000278053DDX529994.737ENSVPAG00000001979DDX5210093.155Vicugna_pacos
ENSG00000278053DDX5210093.656ENSVVUG00000020209DDX5210093.656Vulpes_vulpes
ENSG00000278053DDX529771.912ENSXETG00000025903ddx5210071.817Xenopus_tropicalis
ENSG00000278053DDX529961.138ENSXMAG00000010805ddx529361.301Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0004386helicase activity-IEAFunction
GO:0005524ATP binding-IEAFunction
GO:0005654nucleoplasm-TASComponent
GO:0005730nucleolus-IEAComponent
GO:0006364rRNA processing-TASProcess
GO:0016020membrane19946888.HDAComponent

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