EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000000822 (Gene tree)
Gene ID: -
Gene Symbol: rbm4.1
Alias: rbm4|wu:fc31f07|wu:fc57h11
Full Name: RNA binding motif protein 4.1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 4177 bases
Position: chrscaffold_47:832951-837127
Accession: ZDB-GENE-030131-3902
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000001067	zf-CCHC	PF00098.23	3.8e-08	1	1
ENSGACP00000001066	zf-CCHC	PF00098.23	7e-08	1	1
ENSGACP00000001066	RRM_5	PF13893.6	2.1e-07	1	1
ENSGACP00000001067	RRM_5	PF13893.6	3.9e-07	1	1
ENSGACP00000001066	RRM_1	PF00076.22	1.3e-30	1	2
ENSGACP00000001066	RRM_1	PF00076.22	1.3e-30	2	2
ENSGACP00000001067	RRM_1	PF00076.22	2.6e-30	1	2
ENSGACP00000001067	RRM_1	PF00076.22	2.6e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000001066	-	1138	-	ENSGACP00000001066	332 (aa)	-	G3N6Z1
ENSGACT00000001067	-	2178	-	ENSGACP00000001067	419 (aa)	-	G3N6Z2

Gene Model

Click here to download ENSGACG00000000822's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000000822's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000000822	rbm4.1	96	49.189	ENSGACG00000000821	-	96	49.189
ENSGACG00000000822	rbm4.1	85	52.679	ENSGACG00000019980	rbm4.3	89	48.315
ENSGACG00000000822	rbm4.1	52	43.258	ENSGACG00000019028	rbm14b	76	43.258

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000000822	rbm4.1	100	79.059	ENSAPOG00000012353	rbm4.1	99	92.188	Acanthochromis_polyacanthus
ENSGACG00000000822	rbm4.1	100	77.962	ENSACIG00000016482	rbm4.1	100	77.962	Amphilophus_citrinellus
ENSGACG00000000822	rbm4.1	100	80.378	ENSAOCG00000010915	rbm4.1	99	92.188	Amphiprion_ocellaris
ENSGACG00000000822	rbm4.1	100	80.378	ENSAPEG00000009494	rbm4.1	99	92.188	Amphiprion_percula
ENSGACG00000000822	rbm4.1	100	91.667	ENSATEG00000001904	rbm4.1	100	80.095	Anabas_testudineus
ENSGACG00000000822	rbm4.1	100	77.962	ENSACLG00000007722	rbm4.1	100	77.962	Astatotilapia_calliptera
ENSGACG00000000822	rbm4.1	96	48.387	ENSACLG00000007740	-	94	49.046	Astatotilapia_calliptera
ENSGACG00000000822	rbm4.1	99	66.667	ENSAMXG00000036611	rbm4.1	99	66.938	Astyanax_mexicanus
ENSGACG00000000822	rbm4.1	99	84.946	ENSCSEG00000014365	rbm4.1	100	67.773	Cynoglossus_semilaevis
ENSGACG00000000822	rbm4.1	98	48.009	ENSCSEG00000014359	-	98	48.706	Cynoglossus_semilaevis
ENSGACG00000000822	rbm4.1	100	90.104	ENSCVAG00000019349	rbm4.1	99	85.922	Cyprinodon_variegatus
ENSGACG00000000822	rbm4.1	100	65.258	ENSDARG00000036386	rbm4.1	100	65.258	Danio_rerio
ENSGACG00000000822	rbm4.1	94	53.463	ENSDARG00000055080	rbm4.2	94	54.017	Danio_rerio
ENSGACG00000000822	rbm4.1	55	58.730	ENSEBUG00000007174	-	97	55.747	Eptatretus_burgeri
ENSGACG00000000822	rbm4.1	53	59.116	ENSEBUG00000008142	-	93	43.429	Eptatretus_burgeri
ENSGACG00000000822	rbm4.1	100	63.765	ENSELUG00000013205	rbm4.1	100	63.805	Esox_lucius
ENSGACG00000000822	rbm4.1	100	86.735	ENSFHEG00000022926	rbm4.1	99	86.735	Fundulus_heteroclitus
ENSGACG00000000822	rbm4.1	91	52.661	ENSGMOG00000007455	-	92	51.657	Gadus_morhua
ENSGACG00000000822	rbm4.1	98	83.673	ENSGMOG00000007464	rbm4.1	99	83.673	Gadus_morhua
ENSGACG00000000822	rbm4.1	100	87.500	ENSGAFG00000019302	rbm4.1	99	87.500	Gambusia_affinis
ENSGACG00000000822	rbm4.1	100	77.962	ENSHBUG00000011610	rbm4.1	100	77.962	Haplochromis_burtoni
ENSGACG00000000822	rbm4.1	92	86.458	ENSHCOG00000011403	rbm4.1	95	70.332	Hippocampus_comes
ENSGACG00000000822	rbm4.1	100	83.333	ENSIPUG00000022931	rbm4.1	99	83.333	Ictalurus_punctatus
ENSGACG00000000822	rbm4.1	93	51.253	ENSIPUG00000022937	rbm4.2	99	50.518	Ictalurus_punctatus
ENSGACG00000000822	rbm4.1	100	74.239	ENSKMAG00000006556	rbm4.1	100	74.239	Kryptolebias_marmoratus
ENSGACG00000000822	rbm4.1	70	51.237	ENSKMAG00000006528	-	77	49.671	Kryptolebias_marmoratus
ENSGACG00000000822	rbm4.1	100	76.540	ENSLBEG00000019782	rbm4.1	100	76.540	Labrus_bergylta
ENSGACG00000000822	rbm4.1	96	50.407	ENSLBEG00000019756	-	90	59.615	Labrus_bergylta
ENSGACG00000000822	rbm4.1	94	51.093	ENSMAMG00000001760	-	94	51.366	Mastacembelus_armatus
ENSGACG00000000822	rbm4.1	100	90.625	ENSMAMG00000001765	rbm4.1	100	78.673	Mastacembelus_armatus
ENSGACG00000000822	rbm4.1	100	77.962	ENSMZEG00005009205	rbm4.1	100	77.962	Maylandia_zebra
ENSGACG00000000822	rbm4.1	100	76.887	ENSMMOG00000020479	rbm4.1	100	76.869	Mola_mola
ENSGACG00000000822	rbm4.1	94	51.923	ENSMALG00000020557	-	94	51.374	Monopterus_albus
ENSGACG00000000822	rbm4.1	100	79.147	ENSMALG00000020544	rbm4.1	100	79.147	Monopterus_albus
ENSGACG00000000822	rbm4.1	100	77.962	ENSNBRG00000017755	rbm4.1	100	77.962	Neolamprologus_brichardi
ENSGACG00000000822	rbm4.1	100	77.725	ENSONIG00000015730	rbm4.1	100	77.725	Oreochromis_niloticus
ENSGACG00000000822	rbm4.1	99	89.840	ENSORLG00000012496	rbm4.1	99	89.362	Oryzias_latipes
ENSGACG00000000822	rbm4.1	99	89.840	ENSORLG00020012454	rbm4.1	99	89.362	Oryzias_latipes_hni
ENSGACG00000000822	rbm4.1	100	89.840	ENSORLG00015013678	rbm4.1	99	89.362	Oryzias_latipes_hsok
ENSGACG00000000822	rbm4.1	100	89.840	ENSOMEG00000001001	rbm4.1	99	89.840	Oryzias_melastigma
ENSGACG00000000822	rbm4.1	97	80.663	ENSPKIG00000020805	rbm4.1	87	76.812	Paramormyrops_kingsleyae
ENSGACG00000000822	rbm4.1	53	52.514	ENSPMAG00000003433	rbm4.2	84	52.514	Petromyzon_marinus
ENSGACG00000000822	rbm4.1	100	87.500	ENSPFOG00000012675	rbm4.1	99	87.500	Poecilia_formosa
ENSGACG00000000822	rbm4.1	96	49.315	ENSPFOG00000012685	-	95	49.589	Poecilia_formosa
ENSGACG00000000822	rbm4.1	100	87.500	ENSPLAG00000018572	rbm4.1	99	87.500	Poecilia_latipinna
ENSGACG00000000822	rbm4.1	100	87.500	ENSPMEG00000006290	rbm4.1	99	87.500	Poecilia_mexicana
ENSGACG00000000822	rbm4.1	100	87.500	ENSPREG00000003724	rbm4.1	99	87.500	Poecilia_reticulata
ENSGACG00000000822	rbm4.1	96	63.636	ENSPREG00000003764	-	95	60.287	Poecilia_reticulata
ENSGACG00000000822	rbm4.1	100	77.962	ENSPNYG00000004662	rbm4.1	100	77.962	Pundamilia_nyererei
ENSGACG00000000822	rbm4.1	99	49.870	ENSPNAG00000013057	rbm4.2	97	49.608	Pygocentrus_nattereri
ENSGACG00000000822	rbm4.1	100	65.412	ENSPNAG00000002539	rbm4.1	100	66.042	Pygocentrus_nattereri
ENSGACG00000000822	rbm4.1	97	80.110	ENSSFOG00015021996	sf1	96	80.110	Scleropages_formosus
ENSGACG00000000822	rbm4.1	100	87.500	ENSSMAG00000007571	rbm4.1	99	87.500	Scophthalmus_maximus
ENSGACG00000000822	rbm4.1	95	51.459	ENSSDUG00000003936	-	97	50.000	Seriola_dumerili
ENSGACG00000000822	rbm4.1	100	92.188	ENSSDUG00000003925	rbm4.1	99	92.188	Seriola_dumerili
ENSGACG00000000822	rbm4.1	95	49.600	ENSSLDG00000013157	-	97	50.478	Seriola_lalandi_dorsalis
ENSGACG00000000822	rbm4.1	100	92.188	ENSSLDG00000013147	rbm4.1	99	92.188	Seriola_lalandi_dorsalis
ENSGACG00000000822	rbm4.1	100	91.667	ENSSPAG00000019053	rbm4.1	100	80.615	Stegastes_partitus
ENSGACG00000000822	rbm4.1	95	47.684	ENSSPAG00000019046	-	95	47.283	Stegastes_partitus
ENSGACG00000000822	rbm4.1	95	47.934	ENSTRUG00000013328	-	94	46.774	Takifugu_rubripes
ENSGACG00000000822	rbm4.1	100	72.577	ENSTRUG00000013334	rbm4.1	100	72.340	Takifugu_rubripes
ENSGACG00000000822	rbm4.1	100	87.879	ENSTNIG00000004821	rbm4.1	100	87.879	Tetraodon_nigroviridis
ENSGACG00000000822	rbm4.1	95	47.934	ENSTNIG00000000316	-	95	46.774	Tetraodon_nigroviridis
ENSGACG00000000822	rbm4.1	81	65.922	ENSXETG00000026649	rbm4b	94	49.235	Xenopus_tropicalis
ENSGACG00000000822	rbm4.1	100	87.500	ENSXCOG00000003731	rbm4.1	99	87.500	Xiphophorus_couchianus
ENSGACG00000000822	rbm4.1	100	87.500	ENSXMAG00000008069	rbm4.1	99	87.500	Xiphophorus_maculatus
ENSGACG00000000822	rbm4.1	96	69.325	ENSXMAG00000008059	-	95	69.325	Xiphophorus_maculatus