EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000000826 (Gene tree)
Gene ID: -
Gene Symbol: sf1
Alias: wu:fc09f06|znf162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 10459 bases
Position: chrscaffold_47:838017-848475
Accession: ZDB-GENE-030131-2492
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000001068	KH_1	PF00013.29	2.3e-06	1	1
ENSGACP00000001068	zf-CCHC	PF00098.23	0.00026	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000001068	-	1731	-	ENSGACP00000001068	576 (aa)	-	G3N6Z3

Gene Model

Click here to download ENSGACG00000000826's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000000826's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000000826	sf1	71	68.019	ENSANAG00000022607	-	89	71.353	Aotus_nancymaae
ENSGACG00000000826	sf1	73	76.256	ENSANAG00000026664	-	92	80.000	Aotus_nancymaae
ENSGACG00000000826	sf1	64	91.057	ENSACLG00000007633	sf1	84	77.442	Astatotilapia_calliptera
ENSGACG00000000826	sf1	68	76.722	ENSCJAG00000002780	SF1	56	80.260	Callithrix_jacchus
ENSGACG00000000826	sf1	68	76.722	ENSCHIG00000025867	SF1	70	80.759	Capra_hircus
ENSGACG00000000826	sf1	66	76.355	ENSCAPG00000010762	SF1	66	80.526	Cavia_aperea
ENSGACG00000000826	sf1	67	76.271	ENSCPOG00000012290	SF1	69	80.526	Cavia_porcellus
ENSGACG00000000826	sf1	73	67.808	ENSCCAG00000023781	-	86	71.392	Cebus_capucinus
ENSGACG00000000826	sf1	85	77.778	ENSCCAG00000037881	SF1	92	80.000	Cebus_capucinus
ENSGACG00000000826	sf1	67	78.947	ENSCATG00000011564	SF1	92	80.000	Cercocebus_atys
ENSGACG00000000826	sf1	68	76.722	ENSCSAG00000007258	SF1	70	80.759	Chlorocebus_sabaeus
ENSGACG00000000826	sf1	63	71.100	ENSCHOG00000006008	SF1	67	74.795	Choloepus_hoffmanni
ENSGACG00000000826	sf1	61	61.096	ENSCING00000005564	-	71	62.011	Ciona_intestinalis
ENSGACG00000000826	sf1	69	52.235	ENSCSAVG00000009055	-	60	67.315	Ciona_savignyi
ENSGACG00000000826	sf1	66	79.494	ENSCANG00000042201	SF1	92	80.000	Colobus_angolensis_palliatus
ENSGACG00000000826	sf1	68	77.014	ENSCGRG00001003677	Sf1	67	80.759	Cricetulus_griseus_chok1gshd
ENSGACG00000000826	sf1	66	76.658	ENSCGRG00000001708	Sf1	69	79.534	Cricetulus_griseus_crigri
ENSGACG00000000826	sf1	67	89.147	ENSDARG00000008188	sf1	97	84.099	Danio_rerio
ENSGACG00000000826	sf1	68	76.722	ENSDNOG00000001282	SF1	70	80.506	Dasypus_novemcinctus
ENSGACG00000000826	sf1	66	70.324	ENSETEG00000012830	SF1	52	73.797	Echinops_telfairi
ENSGACG00000000826	sf1	91	52.007	ENSEBUG00000012728	sf1	53	61.757	Eptatretus_burgeri
ENSGACG00000000826	sf1	68	76.485	ENSEASG00005018272	SF1	70	80.506	Equus_asinus_asinus
ENSGACG00000000826	sf1	68	76.485	ENSECAG00000024544	SF1	70	80.506	Equus_caballus
ENSGACG00000000826	sf1	59	76.839	ENSEEUG00000001058	SF1	84	80.294	Erinaceus_europaeus
ENSGACG00000000826	sf1	70	86.341	ENSELUG00000013225	sf1	50	89.182	Esox_lucius
ENSGACG00000000826	sf1	66	76.156	ENSFCAG00000012231	SF1	56	80.260	Felis_catus
ENSGACG00000000826	sf1	66	76.355	ENSFDAG00000009833	SF1	66	80.526	Fukomys_damarensis
ENSGACG00000000826	sf1	97	75.045	ENSGMOG00000007469	sf1	82	94.955	Gadus_morhua
ENSGACG00000000826	sf1	88	83.804	ENSGAFG00000019284	sf1	73	85.859	Gambusia_affinis
ENSGACG00000000826	sf1	88	65.830	ENSGAGG00000021691	SF1	53	81.003	Gopherus_agassizii
ENSGACG00000000826	sf1	68	76.722	ENSHGLG00000009541	SF1	67	80.759	Heterocephalus_glaber_female
ENSGACG00000000826	sf1	66	76.355	ENSHGLG00100013879	-	65	81.616	Heterocephalus_glaber_male
ENSGACG00000000826	sf1	73	67.865	ENSHGLG00100008255	-	75	72.152	Heterocephalus_glaber_male
ENSGACG00000000826	sf1	53	84.039	ENSHGLG00100008076	-	69	76.369	Heterocephalus_glaber_male
ENSGACG00000000826	sf1	63	70.822	ENSSTOG00000024353	-	68	70.649	Ictidomys_tridecemlineatus
ENSGACG00000000826	sf1	66	89.764	ENSKMAG00000005854	sf1	59	89.583	Kryptolebias_marmoratus
ENSGACG00000000826	sf1	64	92.021	ENSLBEG00000019836	sf1	60	91.842	Labrus_bergylta
ENSGACG00000000826	sf1	73	74.941	ENSLACG00000018493	SF1	69	77.368	Latimeria_chalumnae
ENSGACG00000000826	sf1	64	87.903	ENSLOCG00000002130	sf1	58	87.200	Lepisosteus_oculatus
ENSGACG00000000826	sf1	67	78.947	ENSMFAG00000033122	SF1	92	80.000	Macaca_fascicularis
ENSGACG00000000826	sf1	68	76.722	ENSMMUG00000022606	SF1	92	80.052	Macaca_mulatta
ENSGACG00000000826	sf1	67	78.947	ENSMNEG00000037901	SF1	92	80.000	Macaca_nemestrina
ENSGACG00000000826	sf1	65	78.646	ENSMLEG00000040706	SF1	92	78.228	Mandrillus_leucophaeus
ENSGACG00000000826	sf1	68	77.014	ENSMAUG00000014064	Sf1	67	80.759	Mesocricetus_auratus
ENSGACG00000000826	sf1	67	78.750	ENSMICG00000001202	SF1	92	79.798	Microcebus_murinus
ENSGACG00000000826	sf1	68	77.014	ENSMOCG00000022038	Sf1	67	80.759	Microtus_ochrogaster
ENSGACG00000000826	sf1	64	91.328	ENSMMOG00000020474	sf1	56	90.691	Mola_mola
ENSGACG00000000826	sf1	66	75.728	ENSMODG00000029407	SF1	82	80.362	Monodelphis_domestica
ENSGACG00000000826	sf1	64	89.276	ENSMALG00000020521	sf1	64	88.947	Monopterus_albus
ENSGACG00000000826	sf1	68	77.014	MGP_CAROLIEiJ_G0022607	Sf1	99	94.361	Mus_caroli
ENSGACG00000000826	sf1	68	77.014	ENSMUSG00000024949	Sf1	99	94.361	Mus_musculus
ENSGACG00000000826	sf1	68	77.014	MGP_PahariEiJ_G0014101	Sf1	99	94.361	Mus_pahari
ENSGACG00000000826	sf1	68	77.014	MGP_SPRETEiJ_G0023518	Sf1	99	94.361	Mus_spretus
ENSGACG00000000826	sf1	77	72.885	ENSMLUG00000029800	-	66	77.215	Myotis_lucifugus
ENSGACG00000000826	sf1	68	76.485	ENSNGAG00000005550	Sf1	67	80.506	Nannospalax_galili
ENSGACG00000000826	sf1	66	79.494	ENSNLEG00000005236	-	92	80.000	Nomascus_leucogenys
ENSGACG00000000826	sf1	65	75.931	ENSMEUG00000013424	SF1	70	79.576	Notamacropus_eugenii
ENSGACG00000000826	sf1	59	76.230	ENSOPRG00000005008	SF1	67	80.588	Ochotona_princeps
ENSGACG00000000826	sf1	62	72.178	ENSOANG00000002909	SF1	77	75.000	Ornithorhynchus_anatinus
ENSGACG00000000826	sf1	66	91.821	ENSORLG00000011853	sf1	55	91.711	Oryzias_latipes
ENSGACG00000000826	sf1	67	90.464	ENSORLG00020011834	sf1	56	90.339	Oryzias_latipes_hni
ENSGACG00000000826	sf1	64	92.453	ENSORLG00015012855	sf1	55	91.711	Oryzias_latipes_hsok
ENSGACG00000000826	sf1	66	90.551	ENSOMEG00000005210	sf1	56	92.267	Oryzias_melastigma
ENSGACG00000000826	sf1	68	76.722	ENSOARG00000009166	SF1	67	80.759	Ovis_aries
ENSGACG00000000826	sf1	72	74.942	ENSPPAG00000002799	-	92	79.177	Pan_paniscus
ENSGACG00000000826	sf1	66	76.156	ENSPPRG00000013566	SF1	56	80.260	Panthera_pardus
ENSGACG00000000826	sf1	67	76.145	ENSPTIG00000016141	SF1	69	78.987	Panthera_tigris_altaica
ENSGACG00000000826	sf1	75	76.009	ENSPTRG00000003846	SF1	92	80.000	Pan_troglodytes
ENSGACG00000000826	sf1	67	78.947	ENSPANG00000020754	SF1	92	80.000	Papio_anubis
ENSGACG00000000826	sf1	59	78.797	ENSPKIG00000012116	sf1	81	80.556	Paramormyrops_kingsleyae
ENSGACG00000000826	sf1	56	76.061	ENSPSIG00000003610	SF1	54	80.586	Pelodiscus_sinensis
ENSGACG00000000826	sf1	68	77.014	ENSPEMG00000010463	Sf1	67	80.759	Peromyscus_maniculatus_bairdii
ENSGACG00000000826	sf1	64	92.663	ENSPFOG00000013683	sf1	63	90.601	Poecilia_formosa
ENSGACG00000000826	sf1	66	75.912	ENSPCAG00000013631	SF1	56	80.000	Procavia_capensis
ENSGACG00000000826	sf1	67	78.750	ENSPCOG00000027546	SF1	92	79.798	Propithecus_coquereli
ENSGACG00000000826	sf1	66	76.156	ENSPVAG00000016938	SF1	56	80.000	Pteropus_vampyrus
ENSGACG00000000826	sf1	68	77.014	ENSRNOG00000021085	Sf1	61	80.063	Rattus_norvegicus
ENSGACG00000000826	sf1	66	80.102	ENSRBIG00000042818	SF1	92	80.612	Rhinopithecus_bieti
ENSGACG00000000826	sf1	64	79.211	ENSRROG00000045655	SF1	92	78.228	Rhinopithecus_roxellana
ENSGACG00000000826	sf1	77	65.152	ENSSBOG00000022267	-	91	68.354	Saimiri_boliviensis_boliviensis
ENSGACG00000000826	sf1	82	71.698	ENSSHAG00000006841	SF1	71	80.103	Sarcophilus_harrisii
ENSGACG00000000826	sf1	81	87.298	ENSSMAG00000007549	sf1	58	94.681	Scophthalmus_maximus
ENSGACG00000000826	sf1	68	76.722	ENSSSCG00000013021	SF1	70	80.759	Sus_scrofa
ENSGACG00000000826	sf1	67	76.413	ENSTNIG00000004820	sf1	75	75.000	Tetraodon_nigroviridis
ENSGACG00000000826	sf1	67	70.297	ENSTBEG00000013133	SF1	55	73.879	Tupaia_belangeri
ENSGACG00000000826	sf1	66	71.990	ENSTTRG00000008857	SF1	68	75.263	Tursiops_truncatus
ENSGACG00000000826	sf1	67	78.079	ENSUMAG00000007268	SF1	72	80.362	Ursus_maritimus
ENSGACG00000000826	sf1	68	76.722	ENSVVUG00000028585	SF1	70	80.759	Vulpes_vulpes
ENSGACG00000000826	sf1	64	92.412	ENSXMAG00000007822	sf1	57	91.957	Xiphophorus_maculatus