EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000000858 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 8425 bases
Position: chrscaffold_27:2508688-2517112
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000001116	zf-RanBP	PF00641.18	1.1e-09	1	1
ENSGACP00000001116	RRM_1	PF00076.22	2.9e-12	1	1
ENSGACP00000001120	G-patch	PF01585.23	2.9e-17	1	1
ENSGACP00000001110	G-patch	PF01585.23	3.6e-17	1	1
ENSGACP00000001116	G-patch	PF01585.23	9.3e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000001120	-	1883	-	ENSGACP00000001120	412 (aa)	-	G3N744
ENSGACT00000001116	-	2572	-	ENSGACP00000001116	816 (aa)	-	G3N740
ENSGACT00000001110	-	1827	-	ENSGACP00000001110	518 (aa)	-	G3N735

Gene Model

Click here to download ENSGACG00000000858's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000000858's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000000858	-	100	62.678	ENSGACG00000010469	rbm5	100	62.840
ENSGACG00000000858	-	52	43.265	ENSGACG00000009953	rbm10	100	44.082

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000000858	-	100	57.895	ENSG00000003756	RBM5	100	57.938	Homo_sapiens
ENSGACG00000000858	-	100	76.686	ENSAPOG00000006011	-	100	76.805	Acanthochromis_polyacanthus
ENSGACG00000000858	-	100	62.716	ENSAPOG00000016625	rbm5	100	62.946	Acanthochromis_polyacanthus
ENSGACG00000000858	-	100	57.143	ENSAMEG00000012005	RBM5	100	57.583	Ailuropoda_melanoleuca
ENSGACG00000000858	-	99	67.788	ENSACIG00000021310	-	99	68.269	Amphilophus_citrinellus
ENSGACG00000000858	-	79	81.818	ENSACIG00000007571	rbm5	100	56.220	Amphilophus_citrinellus
ENSGACG00000000858	-	100	62.743	ENSAOCG00000002880	rbm5	100	62.615	Amphiprion_ocellaris
ENSGACG00000000858	-	99	74.396	ENSAOCG00000017312	-	99	72.760	Amphiprion_ocellaris
ENSGACG00000000858	-	100	76.331	ENSAPEG00000018222	RBM5	100	76.331	Amphiprion_percula
ENSGACG00000000858	-	99	60.579	ENSAPEG00000011862	rbm5	92	62.324	Amphiprion_percula
ENSGACG00000000858	-	100	62.327	ENSATEG00000024663	rbm5	100	62.442	Anabas_testudineus
ENSGACG00000000858	-	100	76.581	ENSATEG00000003838	-	100	76.498	Anabas_testudineus
ENSGACG00000000858	-	95	62.217	ENSAPLG00000011176	RBM5	99	59.564	Anas_platyrhynchos
ENSGACG00000000858	-	99	60.533	ENSACAG00000008580	RBM5	100	56.294	Anolis_carolinensis
ENSGACG00000000858	-	100	57.707	ENSANAG00000025199	RBM5	100	58.057	Aotus_nancymaae
ENSGACG00000000858	-	100	61.866	ENSACLG00000012748	rbm5	100	61.982	Astatotilapia_calliptera
ENSGACG00000000858	-	89	92.683	ENSACLG00000024198	RBM5	98	92.683	Astatotilapia_calliptera
ENSGACG00000000858	-	99	62.818	ENSAMXG00000008146	rbm5	100	65.651	Astyanax_mexicanus
ENSGACG00000000858	-	100	56.767	ENSBTAG00000006330	RBM5	100	57.346	Bos_taurus
ENSGACG00000000858	-	100	57.519	ENSCJAG00000004740	RBM5	100	57.938	Callithrix_jacchus
ENSGACG00000000858	-	100	57.331	ENSCAFG00000010866	RBM5	100	57.701	Canis_familiaris
ENSGACG00000000858	-	100	57.331	ENSCAFG00020022126	RBM5	100	57.701	Canis_lupus_dingo
ENSGACG00000000858	-	100	56.955	ENSCHIG00000018435	RBM5	100	57.464	Capra_hircus
ENSGACG00000000858	-	86	54.017	ENSTSYG00000004158	RBM5	98	55.226	Carlito_syrichta
ENSGACG00000000858	-	100	46.117	ENSCAPG00000013495	RBM5	100	46.961	Cavia_aperea
ENSGACG00000000858	-	100	57.547	ENSCPOG00000008151	RBM5	100	57.770	Cavia_porcellus
ENSGACG00000000858	-	100	57.519	ENSCCAG00000026401	RBM5	100	57.482	Cebus_capucinus
ENSGACG00000000858	-	100	57.707	ENSCATG00000041038	RBM5	100	57.938	Cercocebus_atys
ENSGACG00000000858	-	100	57.547	ENSCLAG00000007873	RBM5	100	57.820	Chinchilla_lanigera
ENSGACG00000000858	-	100	57.707	ENSCSAG00000014401	RBM5	100	57.938	Chlorocebus_sabaeus
ENSGACG00000000858	-	92	50.612	ENSCHOG00000009429	RBM5	85	52.950	Choloepus_hoffmanni
ENSGACG00000000858	-	99	57.358	ENSCPBG00000002406	RBM5	100	58.865	Chrysemys_picta_bellii
ENSGACG00000000858	-	100	57.895	ENSCANG00000031250	RBM5	100	57.007	Colobus_angolensis_palliatus
ENSGACG00000000858	-	100	57.875	ENSCGRG00001010543	Rbm5	100	58.038	Cricetulus_griseus_chok1gshd
ENSGACG00000000858	-	100	57.875	ENSCGRG00000008475	Rbm5	100	58.038	Cricetulus_griseus_crigri
ENSGACG00000000858	-	98	60.554	ENSCSEG00000000596	rbm5	97	60.900	Cynoglossus_semilaevis
ENSGACG00000000858	-	100	62.903	ENSCVAG00000005655	rbm5	100	63.291	Cyprinodon_variegatus
ENSGACG00000000858	-	93	64.706	ENSDARG00000098280	rbm5	100	60.577	Danio_rerio
ENSGACG00000000858	-	100	57.331	ENSDNOG00000011756	RBM5	100	57.701	Dasypus_novemcinctus
ENSGACG00000000858	-	100	57.169	ENSDORG00000007692	Rbm5	100	57.820	Dipodomys_ordii
ENSGACG00000000858	-	100	55.766	ENSETEG00000012773	RBM5	93	56.314	Echinops_telfairi
ENSGACG00000000858	-	91	54.255	ENSEBUG00000017034	rbm5	96	42.439	Eptatretus_burgeri
ENSGACG00000000858	-	100	57.331	ENSEASG00005011835	RBM5	100	57.701	Equus_asinus_asinus
ENSGACG00000000858	-	100	57.331	ENSECAG00000020447	RBM5	100	57.701	Equus_caballus
ENSGACG00000000858	-	78	68.000	ENSEEUG00000005943	RBM5	89	68.000	Erinaceus_europaeus
ENSGACG00000000858	-	100	62.543	ENSELUG00000022467	rbm5	100	63.688	Esox_lucius
ENSGACG00000000858	-	100	56.955	ENSFCAG00000014639	RBM5	100	57.583	Felis_catus
ENSGACG00000000858	-	99	58.015	ENSFALG00000008828	RBM5	87	58.200	Ficedula_albicollis
ENSGACG00000000858	-	100	57.824	ENSFDAG00000001897	RBM5	100	57.227	Fukomys_damarensis
ENSGACG00000000858	-	92	78.049	ENSFHEG00000015954	rbm5	98	78.049	Fundulus_heteroclitus
ENSGACG00000000858	-	100	60.049	ENSGMOG00000007810	-	100	60.049	Gadus_morhua
ENSGACG00000000858	-	99	62.651	ENSGMOG00000016224	rbm5	100	63.012	Gadus_morhua
ENSGACG00000000858	-	95	62.469	ENSGALG00000039288	RBM5	87	58.621	Gallus_gallus
ENSGACG00000000858	-	100	62.815	ENSGAFG00000010690	rbm5	100	63.314	Gambusia_affinis
ENSGACG00000000858	-	92	55.894	ENSGAGG00000007935	RBM5	99	58.045	Gopherus_agassizii
ENSGACG00000000858	-	100	57.707	ENSGGOG00000014490	RBM5	100	57.938	Gorilla_gorilla
ENSGACG00000000858	-	100	61.397	ENSHBUG00000001941	rbm5	100	61.512	Haplochromis_burtoni
ENSGACG00000000858	-	89	92.683	ENSHBUG00000011901	-	98	92.683	Haplochromis_burtoni
ENSGACG00000000858	-	100	57.358	ENSHGLG00000014844	RBM5	100	57.583	Heterocephalus_glaber_female
ENSGACG00000000858	-	100	57.736	ENSHGLG00100010739	RBM5	100	57.820	Heterocephalus_glaber_male
ENSGACG00000000858	-	100	63.379	ENSHCOG00000004536	-	100	63.946	Hippocampus_comes
ENSGACG00000000858	-	95	59.582	ENSHCOG00000017110	rbm5	98	60.658	Hippocampus_comes
ENSGACG00000000858	-	100	63.275	ENSIPUG00000000640	rbm5	100	63.753	Ictalurus_punctatus
ENSGACG00000000858	-	100	56.856	ENSSTOG00000013856	RBM5	100	58.057	Ictidomys_tridecemlineatus
ENSGACG00000000858	-	100	57.160	ENSJJAG00000008844	Rbm5	100	57.938	Jaculus_jaculus
ENSGACG00000000858	-	100	62.356	ENSKMAG00000006663	rbm5	100	62.572	Kryptolebias_marmoratus
ENSGACG00000000858	-	100	58.812	ENSLBEG00000002522	-	100	57.820	Labrus_bergylta
ENSGACG00000000858	-	100	72.438	ENSLBEG00000010877	-	94	72.674	Labrus_bergylta
ENSGACG00000000858	-	100	63.261	ENSLBEG00000020858	rbm5	100	63.501	Labrus_bergylta
ENSGACG00000000858	-	99	58.087	ENSLACG00000016572	RBM5	100	61.475	Latimeria_chalumnae
ENSGACG00000000858	-	100	63.146	ENSLOCG00000010774	rbm5	100	63.375	Lepisosteus_oculatus
ENSGACG00000000858	-	100	56.718	ENSLAFG00000006733	RBM5	100	57.770	Loxodonta_africana
ENSGACG00000000858	-	100	57.707	ENSMFAG00000031609	RBM5	100	57.938	Macaca_fascicularis
ENSGACG00000000858	-	100	57.707	ENSMMUG00000004921	RBM5	99	57.807	Macaca_mulatta
ENSGACG00000000858	-	100	57.707	ENSMNEG00000044394	RBM5	100	57.938	Macaca_nemestrina
ENSGACG00000000858	-	100	56.844	ENSMLEG00000034689	RBM5	100	57.416	Mandrillus_leucophaeus
ENSGACG00000000858	-	100	76.381	ENSMAMG00000023948	-	100	71.600	Mastacembelus_armatus
ENSGACG00000000858	-	91	75.610	ENSMAMG00000017277	rbm5	97	75.610	Mastacembelus_armatus
ENSGACG00000000858	-	100	61.866	ENSMZEG00005015328	rbm5	100	61.982	Maylandia_zebra
ENSGACG00000000858	-	100	69.693	ENSMZEG00005010035	-	100	70.283	Maylandia_zebra
ENSGACG00000000858	-	95	62.469	ENSMGAG00000003972	RBM5	100	59.818	Meleagris_gallopavo
ENSGACG00000000858	-	100	57.143	ENSMAUG00000020572	Rbm5	98	57.807	Mesocricetus_auratus
ENSGACG00000000858	-	100	57.519	ENSMICG00000016179	RBM5	100	57.701	Microcebus_murinus
ENSGACG00000000858	-	100	57.519	ENSMOCG00000017479	Rbm5	100	58.057	Microtus_ochrogaster
ENSGACG00000000858	-	96	63.145	ENSMMOG00000021804	-	99	59.951	Mola_mola
ENSGACG00000000858	-	99	63.158	ENSMMOG00000015342	rbm5	100	58.857	Mola_mola
ENSGACG00000000858	-	100	57.063	ENSMODG00000012301	RBM5	100	58.007	Monodelphis_domestica
ENSGACG00000000858	-	100	73.050	ENSMALG00000016769	-	100	73.050	Monopterus_albus
ENSGACG00000000858	-	99	59.064	ENSMALG00000000609	rbm5	99	59.472	Monopterus_albus
ENSGACG00000000858	-	100	56.955	MGP_CAROLIEiJ_G0032660	Rbm5	96	67.568	Mus_caroli
ENSGACG00000000858	-	100	57.143	ENSMUSG00000032580	Rbm5	95	67.568	Mus_musculus
ENSGACG00000000858	-	100	57.143	MGP_PahariEiJ_G0015528	Rbm5	90	71.223	Mus_pahari
ENSGACG00000000858	-	100	57.143	MGP_SPRETEiJ_G0033805	Rbm5	96	67.568	Mus_spretus
ENSGACG00000000858	-	100	57.331	ENSMLUG00000007875	RBM5	100	57.838	Myotis_lucifugus
ENSGACG00000000858	-	100	56.888	ENSNGAG00000011777	Rbm5	100	57.820	Nannospalax_galili
ENSGACG00000000858	-	100	61.512	ENSNBRG00000018097	rbm5	100	61.724	Neolamprologus_brichardi
ENSGACG00000000858	-	99	68.333	ENSNBRG00000004400	RBM5	100	68.005	Neolamprologus_brichardi
ENSGACG00000000858	-	100	57.707	ENSNLEG00000006943	RBM5	100	57.938	Nomascus_leucogenys
ENSGACG00000000858	-	100	57.223	ENSMEUG00000012994	RBM5	93	58.049	Notamacropus_eugenii
ENSGACG00000000858	-	100	57.331	ENSOPRG00000015154	RBM5	93	56.959	Ochotona_princeps
ENSGACG00000000858	-	100	57.925	ENSODEG00000016254	-	100	57.820	Octodon_degus
ENSGACG00000000858	-	99	57.946	ENSODEG00000019111	-	100	55.648	Octodon_degus
ENSGACG00000000858	-	100	61.609	ENSONIG00000004107	rbm5	100	61.609	Oreochromis_niloticus
ENSGACG00000000858	-	100	71.059	ENSONIG00000019007	RBM5	100	71.765	Oreochromis_niloticus
ENSGACG00000000858	-	99	60.145	ENSOANG00000006557	RBM5	100	58.912	Ornithorhynchus_anatinus
ENSGACG00000000858	-	100	57.331	ENSOCUG00000011652	RBM5	100	57.464	Oryctolagus_cuniculus
ENSGACG00000000858	-	95	62.774	ENSORLG00000003369	rbm5	99	62.061	Oryzias_latipes
ENSGACG00000000858	-	100	64.935	ENSORLG00000001053	-	100	65.053	Oryzias_latipes
ENSGACG00000000858	-	100	63.182	ENSORLG00020021744	rbm5	100	62.500	Oryzias_latipes_hni
ENSGACG00000000858	-	96	64.242	ENSORLG00020006782	-	98	64.365	Oryzias_latipes_hni
ENSGACG00000000858	-	96	64.242	ENSORLG00015002854	-	98	64.242	Oryzias_latipes_hsok
ENSGACG00000000858	-	91	75.610	ENSORLG00015018379	rbm5	97	75.610	Oryzias_latipes_hsok
ENSGACG00000000858	-	100	62.227	ENSOMEG00000002219	rbm5	100	62.113	Oryzias_melastigma
ENSGACG00000000858	-	100	53.510	ENSOMEG00000010653	-	97	51.699	Oryzias_melastigma
ENSGACG00000000858	-	100	55.619	ENSOGAG00000004205	RBM5	100	57.997	Otolemur_garnettii
ENSGACG00000000858	-	100	56.955	ENSOARG00000010923	RBM5	100	57.464	Ovis_aries
ENSGACG00000000858	-	100	57.707	ENSPPAG00000043010	RBM5	100	57.938	Pan_paniscus
ENSGACG00000000858	-	100	56.955	ENSPPRG00000005404	RBM5	100	57.583	Panthera_pardus
ENSGACG00000000858	-	100	56.955	ENSPTIG00000000962	RBM5	100	57.583	Panthera_tigris_altaica
ENSGACG00000000858	-	100	57.707	ENSPTRG00000014946	RBM5	100	57.938	Pan_troglodytes
ENSGACG00000000858	-	100	57.707	ENSPANG00000018507	RBM5	100	57.938	Papio_anubis
ENSGACG00000000858	-	99	54.237	ENSPKIG00000019187	-	100	55.503	Paramormyrops_kingsleyae
ENSGACG00000000858	-	100	61.283	ENSPKIG00000024837	RBM5	100	61.283	Paramormyrops_kingsleyae
ENSGACG00000000858	-	99	57.707	ENSPSIG00000016073	RBM5	100	60.326	Pelodiscus_sinensis
ENSGACG00000000858	-	99	56.627	ENSPMGG00000017347	rbm5	100	55.488	Periophthalmus_magnuspinnatus
ENSGACG00000000858	-	88	85.000	ENSPMGG00000004719	-	96	85.366	Periophthalmus_magnuspinnatus
ENSGACG00000000858	-	88	56.989	ENSPMAG00000001998	rbm5	99	40.801	Petromyzon_marinus
ENSGACG00000000858	-	100	57.411	ENSPCIG00000021531	RBM5	100	58.126	Phascolarctos_cinereus
ENSGACG00000000858	-	100	62.743	ENSPLAG00000006318	rbm5	100	63.356	Poecilia_latipinna
ENSGACG00000000858	-	99	62.201	ENSPMEG00000008651	rbm5	99	62.500	Poecilia_mexicana
ENSGACG00000000858	-	100	62.243	ENSPMEG00000004295	rbm5	100	63.429	Poecilia_mexicana
ENSGACG00000000858	-	100	63.116	ENSPREG00000003795	rbm5	100	63.501	Poecilia_reticulata
ENSGACG00000000858	-	55	57.604	ENSPCAG00000005459	RBM5	70	57.711	Procavia_capensis
ENSGACG00000000858	-	100	56.856	ENSPCOG00000025840	RBM5	100	57.820	Propithecus_coquereli
ENSGACG00000000858	-	94	62.113	ENSPVAG00000006812	RBM5	100	56.272	Pteropus_vampyrus
ENSGACG00000000858	-	99	70.698	ENSPNYG00000006361	RBM5	99	71.791	Pundamilia_nyererei
ENSGACG00000000858	-	100	61.512	ENSPNYG00000014787	rbm5	100	61.627	Pundamilia_nyererei
ENSGACG00000000858	-	100	63.605	ENSPNAG00000012070	rbm5	100	63.995	Pygocentrus_nattereri
ENSGACG00000000858	-	100	57.143	ENSRNOG00000018153	Rbm5	100	57.938	Rattus_norvegicus
ENSGACG00000000858	-	99	60.145	ENSRBIG00000012679	RBM5	100	57.938	Rhinopithecus_bieti
ENSGACG00000000858	-	99	60.145	ENSRROG00000041331	RBM5	100	57.938	Rhinopithecus_roxellana
ENSGACG00000000858	-	100	57.519	ENSSBOG00000006324	RBM5	100	57.938	Saimiri_boliviensis_boliviensis
ENSGACG00000000858	-	100	57.491	ENSSHAG00000018260	RBM5	100	58.513	Sarcophilus_harrisii
ENSGACG00000000858	-	100	62.369	ENSSFOG00015019052	rbm5	94	62.761	Scleropages_formosus
ENSGACG00000000858	-	100	62.950	ENSSFOG00015019645	-	100	64.808	Scleropages_formosus
ENSGACG00000000858	-	100	63.152	ENSSMAG00000017106	rbm5	100	63.152	Scophthalmus_maximus
ENSGACG00000000858	-	100	62.801	ENSSDUG00000019775	rbm5	100	62.857	Seriola_dumerili
ENSGACG00000000858	-	100	62.543	ENSSLDG00000002329	rbm5	100	62.543	Seriola_lalandi_dorsalis
ENSGACG00000000858	-	100	78.353	ENSSLDG00000015996	-	100	78.588	Seriola_lalandi_dorsalis
ENSGACG00000000858	-	99	59.674	ENSSPUG00000001876	RBM5	100	54.715	Sphenodon_punctatus
ENSGACG00000000858	-	100	75.854	ENSSPAG00000020011	-	100	76.207	Stegastes_partitus
ENSGACG00000000858	-	100	61.894	ENSSPAG00000019638	rbm5	100	62.514	Stegastes_partitus
ENSGACG00000000858	-	92	68.293	ENSSSCG00000011395	RBM5	98	68.293	Sus_scrofa
ENSGACG00000000858	-	99	50.763	ENSTGUG00000006417	RBM5	99	55.019	Taeniopygia_guttata
ENSGACG00000000858	-	100	63.361	ENSTRUG00000008292	rbm5	100	63.944	Takifugu_rubripes
ENSGACG00000000858	-	99	48.322	ENSTNIG00000014742	rbm5	98	47.471	Tetraodon_nigroviridis
ENSGACG00000000858	-	100	51.176	ENSTBEG00000005424	RBM5	100	52.230	Tupaia_belangeri
ENSGACG00000000858	-	100	53.019	ENSTTRG00000007717	RBM5	100	53.452	Tursiops_truncatus
ENSGACG00000000858	-	100	57.143	ENSUAMG00000028347	RBM5	100	57.583	Ursus_americanus
ENSGACG00000000858	-	100	57.143	ENSUMAG00000022027	RBM5	100	57.583	Ursus_maritimus
ENSGACG00000000858	-	90	54.079	ENSVPAG00000009388	RBM5	100	55.118	Vicugna_pacos
ENSGACG00000000858	-	100	57.331	ENSVVUG00000028647	RBM5	100	57.701	Vulpes_vulpes
ENSGACG00000000858	-	100	63.501	ENSXMAG00000016369	rbm5	100	64.000	Xiphophorus_maculatus