EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000001040 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: zgc:92062
Full Name: -
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 12636 bases
Position: chrscaffold_171:122346-134981
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000001349	RRM_1	PF00076.22	9.3e-30	1	2
ENSGACP00000001349	RRM_1	PF00076.22	9.3e-30	2	2
ENSGACP00000001346	RRM_1	PF00076.22	1.2e-29	1	2
ENSGACP00000001346	RRM_1	PF00076.22	1.2e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000001347	-	1874	-	ENSGACP00000001346	433 (aa)	-	G3N7R3
ENSGACT00000001350	-	1402	-	ENSGACP00000001349	409 (aa)	-	G3N7R6

Gene Model

Click here to download ENSGACG00000001040's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000001040's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000001040	-	78	42.135	ENSG00000188739	RBM34	83	42.135	Homo_sapiens
ENSGACG00000001040	-	92	57.389	ENSAPOG00000004027	rbm34	94	57.606	Acanthochromis_polyacanthus
ENSGACG00000001040	-	94	51.574	ENSACIG00000014842	rbm34	86	50.620	Amphilophus_citrinellus
ENSGACG00000001040	-	100	61.625	ENSAOCG00000006146	rbm34	95	61.205	Amphiprion_ocellaris
ENSGACG00000001040	-	100	61.915	ENSAPEG00000022105	rbm34	95	62.884	Amphiprion_percula
ENSGACG00000001040	-	95	63.723	ENSATEG00000016567	rbm34	95	63.246	Anabas_testudineus
ENSGACG00000001040	-	67	48.299	ENSAPLG00000004344	RBM34	94	48.299	Anas_platyrhynchos
ENSGACG00000001040	-	78	44.160	ENSACAG00000001253	RBM34	78	44.745	Anolis_carolinensis
ENSGACG00000001040	-	78	39.894	ENSANAG00000029971	RBM34	83	40.107	Aotus_nancymaae
ENSGACG00000001040	-	98	59.629	ENSACLG00000018471	rbm34	81	58.561	Astatotilapia_calliptera
ENSGACG00000001040	-	100	59.318	ENSACLG00000026337	rbm34	95	58.252	Astatotilapia_calliptera
ENSGACG00000001040	-	94	45.540	ENSAMXG00000021328	rbm34	94	44.104	Astyanax_mexicanus
ENSGACG00000001040	-	74	43.195	ENSCJAG00000018125	RBM34	77	43.072	Callithrix_jacchus
ENSGACG00000001040	-	75	41.935	ENSCAFG00000011507	RBM34	92	41.121	Canis_familiaris
ENSGACG00000001040	-	76	44.023	ENSTSYG00000009942	RBM34	83	43.370	Carlito_syrichta
ENSGACG00000001040	-	61	38.889	ENSCAPG00000015346	RBM34	73	38.889	Cavia_aperea
ENSGACG00000001040	-	75	43.413	ENSCPOG00000015213	RBM34	77	43.413	Cavia_porcellus
ENSGACG00000001040	-	78	42.458	ENSCCAG00000025584	RBM34	83	42.416	Cebus_capucinus
ENSGACG00000001040	-	78	42.818	ENSCATG00000031771	RBM34	83	41.854	Cercocebus_atys
ENSGACG00000001040	-	74	43.161	ENSCLAG00000003464	RBM34	77	42.813	Chinchilla_lanigera
ENSGACG00000001040	-	78	42.222	ENSCSAG00000010079	RBM34	83	41.854	Chlorocebus_sabaeus
ENSGACG00000001040	-	80	42.659	ENSCPBG00000005460	RBM34	75	43.228	Chrysemys_picta_bellii
ENSGACG00000001040	-	74	42.857	ENSCANG00000009561	RBM34	77	43.027	Colobus_angolensis_palliatus
ENSGACG00000001040	-	76	32.659	ENSCGRG00001018721	Rbm34	91	40.698	Cricetulus_griseus_chok1gshd
ENSGACG00000001040	-	76	36.705	ENSCGRG00000014051	Rbm34	77	37.389	Cricetulus_griseus_crigri
ENSGACG00000001040	-	99	54.795	ENSCSEG00000000993	rbm34	94	55.024	Cynoglossus_semilaevis
ENSGACG00000001040	-	95	49.758	ENSCVAG00000018699	rbm34	94	49.751	Cyprinodon_variegatus
ENSGACG00000001040	-	95	47.381	ENSDARG00000101877	rbm34	100	50.479	Danio_rerio
ENSGACG00000001040	-	75	44.643	ENSDNOG00000044740	RBM34	77	44.643	Dasypus_novemcinctus
ENSGACG00000001040	-	62	47.656	ENSDORG00000006420	Rbm34	75	47.656	Dipodomys_ordii
ENSGACG00000001040	-	75	34.627	ENSEEUG00000012760	RBM34	78	34.627	Erinaceus_europaeus
ENSGACG00000001040	-	91	50.588	ENSELUG00000015682	rbm34	92	50.588	Esox_lucius
ENSGACG00000001040	-	76	42.274	ENSFCAG00000001852	RBM34	79	42.274	Felis_catus
ENSGACG00000001040	-	70	59.868	ENSFHEG00000010140	rbm34	99	60.197	Fundulus_heteroclitus
ENSGACG00000001040	-	55	53.680	ENSGMOG00000011683	rbm34	94	55.022	Gadus_morhua
ENSGACG00000001040	-	51	44.493	ENSGALG00000029915	RBM34	78	45.415	Gallus_gallus
ENSGACG00000001040	-	95	56.145	ENSGAFG00000017798	rbm34	95	55.690	Gambusia_affinis
ENSGACG00000001040	-	89	39.599	ENSGAGG00000020598	RBM34	81	43.228	Gopherus_agassizii
ENSGACG00000001040	-	78	41.011	ENSGGOG00000007924	RBM34	83	42.135	Gorilla_gorilla
ENSGACG00000001040	-	100	59.545	ENSHBUG00000015508	rbm34	95	58.495	Haplochromis_burtoni
ENSGACG00000001040	-	75	41.642	ENSHGLG00000016495	RBM34	77	41.441	Heterocephalus_glaber_female
ENSGACG00000001040	-	75	41.642	ENSHGLG00100014678	RBM34	77	41.441	Heterocephalus_glaber_male
ENSGACG00000001040	-	63	46.996	ENSHCOG00000010393	rbm34	66	49.091	Hippocampus_comes
ENSGACG00000001040	-	96	47.229	ENSIPUG00000021952	rbm34	90	47.704	Ictalurus_punctatus
ENSGACG00000001040	-	76	42.012	ENSSTOG00000002792	RBM34	79	42.241	Ictidomys_tridecemlineatus
ENSGACG00000001040	-	55	48.980	ENSJJAG00000021295	Rbm34	63	55.155	Jaculus_jaculus
ENSGACG00000001040	-	95	57.385	ENSKMAG00000007790	rbm34	96	57.627	Kryptolebias_marmoratus
ENSGACG00000001040	-	93	60.976	ENSLBEG00000022530	-	95	62.319	Labrus_bergylta
ENSGACG00000001040	-	93	50.985	ENSLBEG00000028305	rbm34	94	51.834	Labrus_bergylta
ENSGACG00000001040	-	77	43.626	ENSLACG00000013628	RBM34	79	44.092	Latimeria_chalumnae
ENSGACG00000001040	-	91	47.188	ENSLOCG00000015902	rbm34	90	45.926	Lepisosteus_oculatus
ENSGACG00000001040	-	97	38.612	ENSLAFG00000014289	RBM34	93	38.688	Loxodonta_africana
ENSGACG00000001040	-	78	42.222	ENSMFAG00000038522	RBM34	83	41.854	Macaca_fascicularis
ENSGACG00000001040	-	78	42.222	ENSMMUG00000039424	RBM34	87	41.854	Macaca_mulatta
ENSGACG00000001040	-	78	42.222	ENSMNEG00000040149	RBM34	83	41.854	Macaca_nemestrina
ENSGACG00000001040	-	95	62.768	ENSMAMG00000018828	rbm34	95	64.216	Mastacembelus_armatus
ENSGACG00000001040	-	65	56.584	ENSMZEG00005010091	-	87	54.545	Maylandia_zebra
ENSGACG00000001040	-	100	59.545	ENSMZEG00005021586	rbm34	95	58.495	Maylandia_zebra
ENSGACG00000001040	-	92	42.680	ENSMGAG00000011921	RBM34	96	43.377	Meleagris_gallopavo
ENSGACG00000001040	-	76	40.964	ENSMICG00000038704	-	79	40.964	Microcebus_murinus
ENSGACG00000001040	-	78	43.228	ENSMOCG00000013550	Rbm34	81	43.228	Microtus_ochrogaster
ENSGACG00000001040	-	92	58.809	ENSMMOG00000018675	rbm34	95	54.545	Mola_mola
ENSGACG00000001040	-	75	41.449	ENSMODG00000008436	RBM34	77	41.449	Monodelphis_domestica
ENSGACG00000001040	-	93	56.158	ENSMALG00000007816	rbm34	94	57.389	Monopterus_albus
ENSGACG00000001040	-	75	42.183	MGP_CAROLIEiJ_G0031732	Rbm34	78	42.478	Mus_caroli
ENSGACG00000001040	-	75	41.520	ENSMUSG00000033931	Rbm34	77	42.941	Mus_musculus
ENSGACG00000001040	-	76	43.363	MGP_PahariEiJ_G0023329	Rbm34	78	42.773	Mus_pahari
ENSGACG00000001040	-	75	42.183	MGP_SPRETEiJ_G0032849	Rbm34	77	42.478	Mus_spretus
ENSGACG00000001040	-	76	40.294	ENSMPUG00000002849	RBM34	79	40.294	Mustela_putorius_furo
ENSGACG00000001040	-	76	41.311	ENSMLUG00000016224	RBM34	79	42.045	Myotis_lucifugus
ENSGACG00000001040	-	75	42.342	ENSNGAG00000010712	Rbm34	79	42.643	Nannospalax_galili
ENSGACG00000001040	-	99	54.756	ENSNBRG00000010975	rbm34	95	54.094	Neolamprologus_brichardi
ENSGACG00000001040	-	78	41.854	ENSNLEG00000002610	RBM34	83	41.854	Nomascus_leucogenys
ENSGACG00000001040	-	55	47.368	ENSMEUG00000005465	-	78	46.964	Notamacropus_eugenii
ENSGACG00000001040	-	75	37.537	ENSOPRG00000013930	RBM34	79	37.752	Ochotona_princeps
ENSGACG00000001040	-	78	41.737	ENSODEG00000006130	RBM34	91	41.408	Octodon_degus
ENSGACG00000001040	-	100	58.028	ENSONIG00000018121	rbm34	93	56.522	Oreochromis_niloticus
ENSGACG00000001040	-	74	41.246	ENSOANG00000001206	RBM34	78	41.471	Ornithorhynchus_anatinus
ENSGACG00000001040	-	76	42.571	ENSOCUG00000009173	RBM34	79	43.143	Oryctolagus_cuniculus
ENSGACG00000001040	-	95	54.067	ENSORLG00000001221	rbm34	95	53.623	Oryzias_latipes
ENSGACG00000001040	-	95	53.938	ENSORLG00020016678	rbm34	95	53.494	Oryzias_latipes_hni
ENSGACG00000001040	-	95	53.110	ENSORLG00015016039	rbm34	95	52.657	Oryzias_latipes_hsok
ENSGACG00000001040	-	94	55.257	ENSOMEG00000007902	rbm34	95	54.964	Oryzias_melastigma
ENSGACG00000001040	-	76	40.056	ENSOGAG00000012470	RBM34	79	39.542	Otolemur_garnettii
ENSGACG00000001040	-	78	40.336	ENSPPAG00000030692	RBM34	82	40.336	Pan_paniscus
ENSGACG00000001040	-	76	42.857	ENSPPRG00000013597	RBM34	79	42.857	Panthera_pardus
ENSGACG00000001040	-	76	42.566	ENSPTIG00000011612	RBM34	79	42.566	Panthera_tigris_altaica
ENSGACG00000001040	-	78	41.854	ENSPTRG00000032432	RBM34	83	41.854	Pan_troglodytes
ENSGACG00000001040	-	78	41.854	ENSPTRG00000048646	-	83	41.854	Pan_troglodytes
ENSGACG00000001040	-	78	42.222	ENSPANG00000010411	RBM34	83	41.854	Papio_anubis
ENSGACG00000001040	-	90	47.103	ENSPKIG00000009284	rbm34	90	47.739	Paramormyrops_kingsleyae
ENSGACG00000001040	-	76	43.023	ENSPSIG00000011370	RBM34	78	43.023	Pelodiscus_sinensis
ENSGACG00000001040	-	85	41.223	ENSPMGG00000001183	rbm34	91	42.246	Periophthalmus_magnuspinnatus
ENSGACG00000001040	-	77	43.188	ENSPEMG00000000265	Rbm34	81	43.188	Peromyscus_maniculatus_bairdii
ENSGACG00000001040	-	72	44.186	ENSPMAG00000001602	rbm34	76	45.583	Petromyzon_marinus
ENSGACG00000001040	-	76	43.875	ENSPCIG00000029736	-	66	43.875	Phascolarctos_cinereus
ENSGACG00000001040	-	95	55.769	ENSPFOG00000009829	-	95	55.288	Poecilia_formosa
ENSGACG00000001040	-	95	56.250	ENSPLAG00000018385	-	94	55.769	Poecilia_latipinna
ENSGACG00000001040	-	92	50.262	ENSPMEG00000014440	-	92	49.610	Poecilia_mexicana
ENSGACG00000001040	-	94	55.875	ENSPREG00000023227	rbm34	95	55.263	Poecilia_reticulata
ENSGACG00000001040	-	78	43.017	ENSPPYG00000029513	RBM34	83	42.416	Pongo_abelii
ENSGACG00000001040	-	76	41.860	ENSPCOG00000018448	RBM34	82	41.408	Propithecus_coquereli
ENSGACG00000001040	-	76	43.491	ENSPVAG00000015158	RBM34	79	43.567	Pteropus_vampyrus
ENSGACG00000001040	-	100	59.545	ENSPNYG00000004970	rbm34	95	58.252	Pundamilia_nyererei
ENSGACG00000001040	-	96	44.836	ENSPNAG00000002639	rbm34	95	46.062	Pygocentrus_nattereri
ENSGACG00000001040	-	77	42.775	ENSRNOG00000020004	Rbm34	80	42.775	Rattus_norvegicus
ENSGACG00000001040	-	78	42.222	ENSRBIG00000032900	RBM34	83	41.573	Rhinopithecus_bieti
ENSGACG00000001040	-	78	42.222	ENSRROG00000039131	RBM34	83	41.573	Rhinopithecus_roxellana
ENSGACG00000001040	-	77	42.493	ENSSHAG00000015812	RBM34	80	43.380	Sarcophilus_harrisii
ENSGACG00000001040	-	95	46.283	ENSSFOG00015000148	rbm34	95	47.160	Scleropages_formosus
ENSGACG00000001040	-	95	62.884	ENSSMAG00000020955	rbm34	95	63.043	Scophthalmus_maximus
ENSGACG00000001040	-	100	65.463	ENSSDUG00000019237	rbm34	95	66.029	Seriola_dumerili
ENSGACG00000001040	-	100	61.959	ENSSLDG00000000796	rbm34	95	62.470	Seriola_lalandi_dorsalis
ENSGACG00000001040	-	94	37.560	ENSSPUG00000015430	RBM34	81	43.478	Sphenodon_punctatus
ENSGACG00000001040	-	99	60.317	ENSSPAG00000010174	rbm34	92	61.290	Stegastes_partitus
ENSGACG00000001040	-	95	56.436	ENSTRUG00000011172	rbm34	99	54.327	Takifugu_rubripes
ENSGACG00000001040	-	95	46.948	ENSTNIG00000001302	-	91	53.687	Tetraodon_nigroviridis
ENSGACG00000001040	-	76	45.994	ENSXETG00000023721	rbm34	80	46.646	Xenopus_tropicalis
ENSGACG00000001040	-	92	48.522	ENSXCOG00000011190	RBM34	94	47.901	Xiphophorus_couchianus
ENSGACG00000001040	-	95	55.663	ENSXMAG00000029852	rbm34	95	55.288	Xiphophorus_maculatus