EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000001080 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 7827 bases
Position: chrscaffold_121:143345-151171
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000001399	Upf2	PF04050.14	9.1e-33	1	1
ENSGACP00000001399	MIF4G	PF02854.19	3.1e-74	1	3
ENSGACP00000001399	MIF4G	PF02854.19	3.1e-74	2	3
ENSGACP00000001399	MIF4G	PF02854.19	3.1e-74	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000001400	UPF2-201	3822	-	ENSGACP00000001399	1274 (aa)	-	G3N7W5

Gene Model

Click here to download ENSGACG00000001080's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000001080's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000001080	UPF2	100	82.123	ENSG00000151461	UPF2	90	84.383	Homo_sapiens
ENSGACG00000001080	UPF2	100	89.725	ENSAPOG00000015837	UPF2	100	89.176	Acanthochromis_polyacanthus
ENSGACG00000001080	UPF2	100	82.734	ENSAMEG00000004586	UPF2	90	84.469	Ailuropoda_melanoleuca
ENSGACG00000001080	UPF2	100	94.223	ENSACIG00000018078	UPF2	100	92.974	Amphilophus_citrinellus
ENSGACG00000001080	UPF2	100	94.292	ENSAOCG00000016766	UPF2	99	93.980	Amphiprion_ocellaris
ENSGACG00000001080	UPF2	100	94.371	ENSAPEG00000019084	UPF2	99	94.058	Amphiprion_percula
ENSGACG00000001080	UPF2	100	93.911	ENSATEG00000021677	UPF2	99	92.662	Anabas_testudineus
ENSGACG00000001080	UPF2	100	78.237	ENSAPLG00000010287	UPF2	90	81.771	Anas_platyrhynchos
ENSGACG00000001080	UPF2	100	81.875	ENSACAG00000009259	UPF2	90	84.542	Anolis_carolinensis
ENSGACG00000001080	UPF2	91	78.358	ENSANAG00000028451	UPF2	92	78.343	Aotus_nancymaae
ENSGACG00000001080	UPF2	100	93.521	ENSACLG00000012696	UPF2	99	92.974	Astatotilapia_calliptera
ENSGACG00000001080	UPF2	100	86.957	ENSAMXG00000013700	UPF2	89	88.093	Astyanax_mexicanus
ENSGACG00000001080	UPF2	100	82.344	ENSBTAG00000000288	UPF2	90	84.297	Bos_taurus
ENSGACG00000001080	UPF2	100	82.031	ENSCJAG00000020685	UPF2	90	84.297	Callithrix_jacchus
ENSGACG00000001080	UPF2	100	82.734	ENSCAFG00000004839	UPF2	90	84.469	Canis_familiaris
ENSGACG00000001080	UPF2	95	86.364	ENSCAFG00020005882	UPF2	90	82.140	Canis_lupus_dingo
ENSGACG00000001080	UPF2	100	82.344	ENSCHIG00000020359	UPF2	90	84.297	Capra_hircus
ENSGACG00000001080	UPF2	100	82.344	ENSTSYG00000000935	UPF2	90	84.211	Carlito_syrichta
ENSGACG00000001080	UPF2	91	74.508	ENSCAPG00000016658	UPF2	94	74.116	Cavia_aperea
ENSGACG00000001080	UPF2	99	79.638	ENSCPOG00000008809	UPF2	91	82.744	Cavia_porcellus
ENSGACG00000001080	UPF2	100	75.859	ENSCCAG00000035991	UPF2	91	77.845	Cebus_capucinus
ENSGACG00000001080	UPF2	100	82.201	ENSCATG00000032679	UPF2	90	84.383	Cercocebus_atys
ENSGACG00000001080	UPF2	100	81.470	ENSCLAG00000011434	UPF2	91	84.383	Chinchilla_lanigera
ENSGACG00000001080	UPF2	100	82.201	ENSCSAG00000013372	UPF2	90	84.383	Chlorocebus_sabaeus
ENSGACG00000001080	UPF2	77	90.845	ENSCHOG00000000422	UPF2	78	90.632	Choloepus_hoffmanni
ENSGACG00000001080	UPF2	100	81.064	ENSCPBG00000027823	UPF2	92	84.728	Chrysemys_picta_bellii
ENSGACG00000001080	UPF2	79	48.728	ENSCSAVG00000007772	-	99	47.911	Ciona_savignyi
ENSGACG00000001080	UPF2	100	77.149	ENSCANG00000040396	UPF2	90	79.138	Colobus_angolensis_palliatus
ENSGACG00000001080	UPF2	100	82.252	ENSCGRG00001019347	Upf2	90	84.111	Cricetulus_griseus_chok1gshd
ENSGACG00000001080	UPF2	100	82.252	ENSCGRG00000017993	Upf2	90	84.111	Cricetulus_griseus_crigri
ENSGACG00000001080	UPF2	99	85.020	ENSCSEG00000003520	UPF2	99	84.736	Cynoglossus_semilaevis
ENSGACG00000001080	UPF2	99	91.811	ENSCVAG00000006167	UPF2	100	91.260	Cyprinodon_variegatus
ENSGACG00000001080	UPF2	100	82.500	ENSDNOG00000018160	UPF2	90	84.556	Dasypus_novemcinctus
ENSGACG00000001080	UPF2	100	82.031	ENSDORG00000002478	Upf2	90	83.952	Dipodomys_ordii
ENSGACG00000001080	UPF2	72	92.647	ENSETEG00000011583	-	62	92.647	Echinops_telfairi
ENSGACG00000001080	UPF2	65	70.861	ENSEBUG00000012448	-	93	67.804	Eptatretus_burgeri
ENSGACG00000001080	UPF2	100	81.783	ENSEASG00005019274	UPF2	90	86.541	Equus_asinus_asinus
ENSGACG00000001080	UPF2	100	81.783	ENSECAG00000017022	UPF2	91	84.642	Equus_caballus
ENSGACG00000001080	UPF2	82	74.441	ENSEEUG00000007819	UPF2	68	87.139	Erinaceus_europaeus
ENSGACG00000001080	UPF2	100	88.025	ENSELUG00000012014	UPF2	90	90.563	Esox_lucius
ENSGACG00000001080	UPF2	100	85.635	ENSFCAG00000005785	UPF2	90	84.469	Felis_catus
ENSGACG00000001080	UPF2	100	83.047	ENSFALG00000001889	UPF2	89	84.901	Ficedula_albicollis
ENSGACG00000001080	UPF2	100	81.079	ENSFDAG00000014348	UPF2	91	84.010	Fukomys_damarensis
ENSGACG00000001080	UPF2	99	90.859	ENSFHEG00000009826	UPF2	99	90.701	Fundulus_heteroclitus
ENSGACG00000001080	UPF2	91	90.078	ENSGMOG00000005557	UPF2	100	87.529	Gadus_morhua
ENSGACG00000001080	UPF2	100	82.500	ENSGALG00000033772	UPF2	90	85.172	Gallus_gallus
ENSGACG00000001080	UPF2	100	90.618	ENSGAFG00000020867	UPF2	99	90.461	Gambusia_affinis
ENSGACG00000001080	UPF2	100	81.967	ENSGAGG00000002700	UPF2	90	84.297	Gopherus_agassizii
ENSGACG00000001080	UPF2	100	82.123	ENSGGOG00000001479	UPF2	90	84.383	Gorilla_gorilla
ENSGACG00000001080	UPF2	100	93.677	ENSHBUG00000004249	UPF2	100	93.130	Haplochromis_burtoni
ENSGACG00000001080	UPF2	100	72.749	ENSHGLG00000003822	-	90	75.865	Heterocephalus_glaber_female
ENSGACG00000001080	UPF2	100	81.314	ENSHGLG00000015176	-	91	84.211	Heterocephalus_glaber_female
ENSGACG00000001080	UPF2	88	83.467	ENSHGLG00100010036	UPF2	89	84.046	Heterocephalus_glaber_male
ENSGACG00000001080	UPF2	100	89.642	ENSHCOG00000004025	UPF2	99	88.941	Hippocampus_comes
ENSGACG00000001080	UPF2	100	86.661	ENSIPUG00000015524	UPF2	90	87.662	Ictalurus_punctatus
ENSGACG00000001080	UPF2	100	81.641	ENSSTOG00000013075	UPF2	90	83.952	Ictidomys_tridecemlineatus
ENSGACG00000001080	UPF2	100	81.626	ENSJJAG00000004913	Upf2	91	83.910	Jaculus_jaculus
ENSGACG00000001080	UPF2	99	91.680	ENSKMAG00000001071	UPF2	99	90.716	Kryptolebias_marmoratus
ENSGACG00000001080	UPF2	100	93.677	ENSLBEG00000016394	-	99	93.443	Labrus_bergylta
ENSGACG00000001080	UPF2	80	91.610	ENSLBEG00000000728	-	94	92.008	Labrus_bergylta
ENSGACG00000001080	UPF2	99	75.774	ENSLACG00000015945	UPF2	91	77.114	Latimeria_chalumnae
ENSGACG00000001080	UPF2	99	87.274	ENSLOCG00000015698	UPF2	91	88.362	Lepisosteus_oculatus
ENSGACG00000001080	UPF2	100	82.201	ENSMFAG00000043865	UPF2	90	84.383	Macaca_fascicularis
ENSGACG00000001080	UPF2	100	82.201	ENSMMUG00000008241	UPF2	90	84.383	Macaca_mulatta
ENSGACG00000001080	UPF2	80	82.410	ENSMNEG00000008062	UPF2	88	85.304	Macaca_nemestrina
ENSGACG00000001080	UPF2	100	79.690	ENSMLEG00000036120	UPF2	90	82.053	Mandrillus_leucophaeus
ENSGACG00000001080	UPF2	100	93.208	ENSMAMG00000018276	UPF2	91	92.679	Mastacembelus_armatus
ENSGACG00000001080	UPF2	100	93.521	ENSMZEG00005021595	UPF2	99	92.974	Maylandia_zebra
ENSGACG00000001080	UPF2	99	82.224	ENSMGAG00000004573	UPF2	90	84.788	Meleagris_gallopavo
ENSGACG00000001080	UPF2	100	80.297	ENSMAUG00000016512	Upf2	90	81.865	Mesocricetus_auratus
ENSGACG00000001080	UPF2	95	86.364	ENSMICG00000001716	UPF2	90	81.434	Microcebus_murinus
ENSGACG00000001080	UPF2	100	81.455	ENSMOCG00000008263	Upf2	91	84.370	Microtus_ochrogaster
ENSGACG00000001080	UPF2	100	89.961	ENSMMOG00000006528	UPF2	91	88.812	Mola_mola
ENSGACG00000001080	UPF2	100	80.078	ENSMODG00000016794	UPF2	90	84.211	Monodelphis_domestica
ENSGACG00000001080	UPF2	100	93.020	ENSMALG00000002663	UPF2	100	91.765	Monopterus_albus
ENSGACG00000001080	UPF2	100	81.939	MGP_CAROLIEiJ_G0023157	Upf2	99	83.826	Mus_caroli
ENSGACG00000001080	UPF2	100	82.330	ENSMUSG00000043241	Upf2	99	83.681	Mus_musculus
ENSGACG00000001080	UPF2	100	82.330	MGP_PahariEiJ_G0019217	Upf2	99	83.681	Mus_pahari
ENSGACG00000001080	UPF2	100	82.486	MGP_SPRETEiJ_G0024075	Upf2	99	83.681	Mus_spretus
ENSGACG00000001080	UPF2	100	82.578	ENSMPUG00000001064	UPF2	90	84.469	Mustela_putorius_furo
ENSGACG00000001080	UPF2	100	81.903	ENSMLUG00000000228	UPF2	91	83.921	Myotis_lucifugus
ENSGACG00000001080	UPF2	100	93.677	ENSNBRG00000013629	UPF2	99	93.130	Neolamprologus_brichardi
ENSGACG00000001080	UPF2	100	82.279	ENSNLEG00000012058	UPF2	90	84.469	Nomascus_leucogenys
ENSGACG00000001080	UPF2	72	93.662	ENSOPRG00000006801	-	73	93.662	Ochotona_princeps
ENSGACG00000001080	UPF2	100	81.357	ENSODEG00000001290	UPF2	91	84.397	Octodon_degus
ENSGACG00000001080	UPF2	100	93.599	ENSONIG00000017991	UPF2	99	93.052	Oreochromis_niloticus
ENSGACG00000001080	UPF2	100	81.323	ENSOCUG00000006230	UPF2	91	84.569	Oryctolagus_cuniculus
ENSGACG00000001080	UPF2	100	89.922	ENSORLG00000017189	UPF2	99	89.531	Oryzias_latipes
ENSGACG00000001080	UPF2	100	90.000	ENSORLG00020005969	UPF2	99	89.609	Oryzias_latipes_hni
ENSGACG00000001080	UPF2	100	90.000	ENSORLG00015005713	UPF2	99	89.609	Oryzias_latipes_hsok
ENSGACG00000001080	UPF2	100	87.490	ENSOMEG00000023420	UPF2	98	87.568	Oryzias_melastigma
ENSGACG00000001080	UPF2	100	82.109	ENSOGAG00000005796	UPF2	90	84.211	Otolemur_garnettii
ENSGACG00000001080	UPF2	100	82.215	ENSOARG00000014587	UPF2	90	84.152	Ovis_aries
ENSGACG00000001080	UPF2	100	79.225	ENSPPAG00000037953	UPF2	90	81.622	Pan_paniscus
ENSGACG00000001080	UPF2	100	82.266	ENSPPRG00000000690	UPF2	90	84.469	Panthera_pardus
ENSGACG00000001080	UPF2	100	82.266	ENSPTIG00000008867	UPF2	90	84.469	Panthera_tigris_altaica
ENSGACG00000001080	UPF2	100	82.123	ENSPTRG00000002291	UPF2	90	84.383	Pan_troglodytes
ENSGACG00000001080	UPF2	100	82.123	ENSPANG00000023399	UPF2	90	84.297	Papio_anubis
ENSGACG00000001080	UPF2	100	86.760	ENSPKIG00000025502	UPF2	90	88.007	Paramormyrops_kingsleyae
ENSGACG00000001080	UPF2	59	80.577	ENSPSIG00000015158	UPF2	80	84.977	Pelodiscus_sinensis
ENSGACG00000001080	UPF2	100	87.940	ENSPMGG00000005259	UPF2	100	87.784	Periophthalmus_magnuspinnatus
ENSGACG00000001080	UPF2	93	75.504	ENSPEMG00000015731	Upf2	89	84.821	Peromyscus_maniculatus_bairdii
ENSGACG00000001080	UPF2	100	81.995	ENSPCIG00000006656	UPF2	91	84.138	Phascolarctos_cinereus
ENSGACG00000001080	UPF2	100	90.618	ENSPFOG00000017118	UPF2	99	90.461	Poecilia_formosa
ENSGACG00000001080	UPF2	100	90.696	ENSPLAG00000005094	UPF2	99	90.539	Poecilia_latipinna
ENSGACG00000001080	UPF2	100	90.618	ENSPMEG00000017009	UPF2	99	90.461	Poecilia_mexicana
ENSGACG00000001080	UPF2	100	90.196	ENSPREG00000021880	UPF2	100	90.118	Poecilia_reticulata
ENSGACG00000001080	UPF2	66	84.661	ENSPPYG00000002089	-	99	83.986	Pongo_abelii
ENSGACG00000001080	UPF2	100	70.156	ENSPCAG00000000684	UPF2	85	75.046	Procavia_capensis
ENSGACG00000001080	UPF2	100	79.672	ENSPCOG00000021656	UPF2	90	81.881	Propithecus_coquereli
ENSGACG00000001080	UPF2	100	76.034	ENSPVAG00000017286	UPF2	90	77.759	Pteropus_vampyrus
ENSGACG00000001080	UPF2	100	91.179	ENSPNYG00000017096	UPF2	100	90.632	Pundamilia_nyererei
ENSGACG00000001080	UPF2	100	88.222	ENSPNAG00000009357	UPF2	90	88.956	Pygocentrus_nattereri
ENSGACG00000001080	UPF2	100	78.132	ENSRNOG00000023593	Upf2	98	93.182	Rattus_norvegicus
ENSGACG00000001080	UPF2	100	81.172	ENSRBIG00000037780	UPF2	91	83.089	Rhinopithecus_bieti
ENSGACG00000001080	UPF2	100	81.967	ENSRROG00000043547	UPF2	90	84.038	Rhinopithecus_roxellana
ENSGACG00000001080	UPF2	100	81.875	ENSSBOG00000020012	UPF2	90	83.952	Saimiri_boliviensis_boliviensis
ENSGACG00000001080	UPF2	100	85.938	ENSSFOG00015023788	upf2	100	83.841	Scleropages_formosus
ENSGACG00000001080	UPF2	90	91.609	ENSSMAG00000007637	UPF2	100	91.783	Scophthalmus_maximus
ENSGACG00000001080	UPF2	100	94.136	ENSSDUG00000017244	UPF2	99	94.136	Seriola_dumerili
ENSGACG00000001080	UPF2	100	91.922	ENSSLDG00000016866	UPF2	100	91.216	Seriola_lalandi_dorsalis
ENSGACG00000001080	UPF2	100	80.793	ENSSARG00000008615	UPF2	90	82.788	Sorex_araneus
ENSGACG00000001080	UPF2	100	79.969	ENSSPUG00000014544	UPF2	89	82.140	Sphenodon_punctatus
ENSGACG00000001080	UPF2	68	84.765	ENSSSCG00000011117	-	99	84.114	Sus_scrofa
ENSGACG00000001080	UPF2	99	82.799	ENSTGUG00000002163	-	91	84.801	Taeniopygia_guttata
ENSGACG00000001080	UPF2	100	91.335	ENSTRUG00000007519	UPF2	99	90.888	Takifugu_rubripes
ENSGACG00000001080	UPF2	93	73.720	ENSTBEG00000012679	UPF2	84	76.449	Tupaia_belangeri
ENSGACG00000001080	UPF2	100	81.235	ENSTTRG00000016388	UPF2	91	84.124	Tursiops_truncatus
ENSGACG00000001080	UPF2	87	93.258	ENSUAMG00000023560	UPF2	88	93.258	Ursus_americanus
ENSGACG00000001080	UPF2	100	82.734	ENSUMAG00000012953	UPF2	86	84.469	Ursus_maritimus
ENSGACG00000001080	UPF2	83	96.774	ENSVPAG00000006763	UPF2	76	96.774	Vicugna_pacos
ENSGACG00000001080	UPF2	100	82.734	ENSVVUG00000006166	UPF2	90	84.469	Vulpes_vulpes
ENSGACG00000001080	UPF2	100	76.575	ENSXETG00000033103	UPF2	91	82.014	Xenopus_tropicalis
ENSGACG00000001080	UPF2	100	90.584	ENSXCOG00000011604	UPF2	100	90.539	Xiphophorus_couchianus
ENSGACG00000001080	UPF2	100	90.696	ENSXMAG00000017209	UPF2	99	90.539	Xiphophorus_maculatus