EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000001377 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 6309 bases
Position: chrscaffold_186:83160-89468
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000001787	zf-C2H2	PF00096.26	1.7e-52	1	9
ENSGACP00000001787	zf-C2H2	PF00096.26	1.7e-52	2	9
ENSGACP00000001787	zf-C2H2	PF00096.26	1.7e-52	3	9
ENSGACP00000001787	zf-C2H2	PF00096.26	1.7e-52	4	9
ENSGACP00000001787	zf-C2H2	PF00096.26	1.7e-52	5	9
ENSGACP00000001787	zf-C2H2	PF00096.26	1.7e-52	6	9
ENSGACP00000001787	zf-C2H2	PF00096.26	1.7e-52	7	9
ENSGACP00000001787	zf-C2H2	PF00096.26	1.7e-52	8	9
ENSGACP00000001787	zf-C2H2	PF00096.26	1.7e-52	9	9
ENSGACP00000001785	zf-C2H2	PF00096.26	5.9e-51	1	9
ENSGACP00000001785	zf-C2H2	PF00096.26	5.9e-51	2	9
ENSGACP00000001785	zf-C2H2	PF00096.26	5.9e-51	3	9
ENSGACP00000001785	zf-C2H2	PF00096.26	5.9e-51	4	9
ENSGACP00000001785	zf-C2H2	PF00096.26	5.9e-51	5	9
ENSGACP00000001785	zf-C2H2	PF00096.26	5.9e-51	6	9
ENSGACP00000001785	zf-C2H2	PF00096.26	5.9e-51	7	9
ENSGACP00000001785	zf-C2H2	PF00096.26	5.9e-51	8	9
ENSGACP00000001785	zf-C2H2	PF00096.26	5.9e-51	9	9
ENSGACP00000001787	zf-met	PF12874.7	1.9e-18	1	5
ENSGACP00000001787	zf-met	PF12874.7	1.9e-18	2	5
ENSGACP00000001787	zf-met	PF12874.7	1.9e-18	3	5
ENSGACP00000001787	zf-met	PF12874.7	1.9e-18	4	5
ENSGACP00000001787	zf-met	PF12874.7	1.9e-18	5	5
ENSGACP00000001785	zf-met	PF12874.7	1e-17	1	4
ENSGACP00000001785	zf-met	PF12874.7	1e-17	2	4
ENSGACP00000001785	zf-met	PF12874.7	1e-17	3	4
ENSGACP00000001785	zf-met	PF12874.7	1e-17	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000001784	-	723	-	ENSGACP00000001782	219 (aa)	-	G3N8Z5
ENSGACT00000001787	-	2245	-	ENSGACP00000001785	551 (aa)	-	G3N8Z8
ENSGACT00000001789	-	1536	-	ENSGACP00000001787	512 (aa)	-	G3N900

Gene Model

Click here to download ENSGACG00000001377's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000001377's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000001377	-	95	44.000	ENSGACG00000010147	snai1a	51	44.000
ENSGACG00000001377	-	94	33.253	ENSGACG00000019863	-	98	33.166
ENSGACG00000001377	-	94	38.621	ENSGACG00000005553	znf236	99	32.234
ENSGACG00000001377	-	92	35.165	ENSGACG00000020771	zbtb16a	50	35.165
ENSGACG00000001377	-	95	39.375	ENSGACG00000013660	-	99	40.575
ENSGACG00000001377	-	80	38.235	ENSGACG00000018794	ovol1a	52	38.235
ENSGACG00000001377	-	93	39.665	ENSGACG00000005742	-	55	39.665
ENSGACG00000001377	-	92	32.298	ENSGACG00000009449	znf526	95	32.143
ENSGACG00000001377	-	99	33.459	ENSGACG00000003258	znf319b	93	33.459
ENSGACG00000001377	-	92	37.778	ENSGACG00000001371	-	100	37.778
ENSGACG00000001377	-	93	38.158	ENSGACG00000019550	-	97	38.158
ENSGACG00000001377	-	93	33.953	ENSGACG00000015729	-	97	33.953
ENSGACG00000001377	-	94	39.521	ENSGACG00000012415	GZF1	99	40.476
ENSGACG00000001377	-	92	35.677	ENSGACG00000010393	-	100	35.677
ENSGACG00000001377	-	98	39.466	ENSGACG00000012517	-	100	39.466
ENSGACG00000001377	-	93	37.281	ENSGACG00000016248	-	100	40.000
ENSGACG00000001377	-	92	33.529	ENSGACG00000016481	znf710b	50	33.529
ENSGACG00000001377	-	93	35.369	ENSGACG00000001523	-	99	36.264
ENSGACG00000001377	-	98	43.210	ENSGACG00000010051	-	99	38.438
ENSGACG00000001377	-	95	33.158	ENSGACG00000008733	znf646	88	33.158
ENSGACG00000001377	-	95	44.715	ENSGACG00000006283	-	80	43.750
ENSGACG00000001377	-	85	37.634	ENSGACG00000001618	-	84	37.654
ENSGACG00000001377	-	93	38.347	ENSGACG00000004765	-	100	38.347
ENSGACG00000001377	-	93	40.741	ENSGACG00000004761	-	100	39.877
ENSGACG00000001377	-	93	33.333	ENSGACG00000010515	ZNF628	99	34.495
ENSGACG00000001377	-	93	39.888	ENSGACG00000018415	-	99	39.888
ENSGACG00000001377	-	95	30.144	ENSGACG00000014714	si:dkey-89b17.4	99	30.000
ENSGACG00000001377	-	94	33.445	ENSGACG00000011187	zbtb48	57	33.445
ENSGACG00000001377	-	93	35.870	ENSGACG00000001166	-	100	35.870
ENSGACG00000001377	-	93	42.737	ENSGACG00000013652	-	99	42.737
ENSGACG00000001377	-	92	37.500	ENSGACG00000013659	-	94	37.013
ENSGACG00000001377	-	93	42.105	ENSGACG00000011808	e4f1	69	40.341
ENSGACG00000001377	-	96	39.672	ENSGACG00000014395	-	99	39.672
ENSGACG00000001377	-	81	37.121	ENSGACG00000008982	scrt1b	62	37.121
ENSGACG00000001377	-	93	35.338	ENSGACG00000017935	snai2	54	35.338
ENSGACG00000001377	-	93	37.500	ENSGACG00000018134	gfi1b	51	37.500
ENSGACG00000001377	-	93	34.309	ENSGACG00000018816	-	99	33.895
ENSGACG00000001377	-	96	36.911	ENSGACG00000004549	-	100	36.815
ENSGACG00000001377	-	96	41.250	ENSGACG00000001879	znf384l	51	41.250
ENSGACG00000001377	-	96	32.407	ENSGACG00000014840	maza	96	40.506
ENSGACG00000001377	-	98	37.255	ENSGACG00000006824	znf131	57	37.255
ENSGACG00000001377	-	94	36.646	ENSGACG00000018088	si:dkey-7i4.5	100	36.646
ENSGACG00000001377	-	93	42.073	ENSGACG00000010352	si:ch211-207i20.2	62	42.073
ENSGACG00000001377	-	93	37.050	ENSGACG00000012611	-	86	37.050
ENSGACG00000001377	-	93	39.521	ENSGACG00000015674	gfi1aa	58	39.521
ENSGACG00000001377	-	95	41.011	ENSGACG00000005239	-	97	42.169
ENSGACG00000001377	-	93	36.543	ENSGACG00000001358	-	100	36.543
ENSGACG00000001377	-	95	38.462	ENSGACG00000010384	-	100	38.462
ENSGACG00000001377	-	92	35.156	ENSGACG00000003372	zbtb47b	55	35.156
ENSGACG00000001377	-	96	35.957	ENSGACG00000004478	-	100	40.107

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000001377	-	99	77.858	ENSAPOG00000001563	-	88	72.800	Acanthochromis_polyacanthus
ENSGACG00000001377	-	93	69.892	ENSACIG00000015411	-	88	68.072	Amphilophus_citrinellus
ENSGACG00000001377	-	92	87.764	ENSAOCG00000013505	-	54	87.764	Amphiprion_ocellaris
ENSGACG00000001377	-	92	79.741	ENSAOCG00000013589	-	93	77.686	Amphiprion_ocellaris
ENSGACG00000001377	-	92	78.440	ENSAPEG00000022774	-	90	76.316	Amphiprion_percula
ENSGACG00000001377	-	92	87.764	ENSAPEG00000022756	-	54	87.764	Amphiprion_percula
ENSGACG00000001377	-	93	87.764	ENSATEG00000019284	-	50	87.109	Anabas_testudineus
ENSGACG00000001377	-	92	83.436	ENSATEG00000019261	-	83	80.000	Anabas_testudineus
ENSGACG00000001377	-	98	81.977	ENSACLG00000008624	-	97	81.977	Astatotilapia_calliptera
ENSGACG00000001377	-	93	83.389	ENSACLG00000008606	-	93	83.389	Astatotilapia_calliptera
ENSGACG00000001377	-	92	76.695	ENSCSEG00000008903	-	83	75.109	Cynoglossus_semilaevis
ENSGACG00000001377	-	92	83.265	ENSCVAG00000016534	-	61	83.122	Cyprinodon_variegatus
ENSGACG00000001377	-	92	62.678	ENSGMOG00000000494	-	98	62.360	Gadus_morhua
ENSGACG00000001377	-	97	73.985	ENSGAFG00000002659	-	69	73.985	Gambusia_affinis
ENSGACG00000001377	-	96	74.569	ENSHBUG00000008502	-	92	74.569	Haplochromis_burtoni
ENSGACG00000001377	-	92	78.903	ENSHCOG00000000511	-	97	69.048	Hippocampus_comes
ENSGACG00000001377	-	96	77.961	ENSLBEG00000018509	-	92	77.961	Labrus_bergylta
ENSGACG00000001377	-	93	87.179	ENSMAMG00000018137	-	70	81.149	Mastacembelus_armatus
ENSGACG00000001377	-	96	74.569	ENSMZEG00005002583	-	91	74.569	Maylandia_zebra
ENSGACG00000001377	-	95	60.825	ENSMMOG00000009733	-	86	74.740	Mola_mola
ENSGACG00000001377	-	92	61.086	ENSMALG00000019991	-	96	61.086	Monopterus_albus
ENSGACG00000001377	-	89	91.429	ENSNBRG00000008223	-	83	82.372	Neolamprologus_brichardi
ENSGACG00000001377	-	94	83.582	ENSONIG00000017233	-	99	83.582	Oreochromis_niloticus
ENSGACG00000001377	-	93	74.262	ENSOMEG00000016463	-	63	74.510	Oryzias_melastigma
ENSGACG00000001377	-	92	49.879	ENSPMGG00000002384	-	88	49.879	Periophthalmus_magnuspinnatus
ENSGACG00000001377	-	97	73.985	ENSPFOG00000006287	-	77	73.985	Poecilia_formosa
ENSGACG00000001377	-	92	82.126	ENSPLAG00000003412	-	56	73.664	Poecilia_latipinna
ENSGACG00000001377	-	97	73.985	ENSPMEG00000005897	-	71	73.985	Poecilia_mexicana
ENSGACG00000001377	-	99	71.581	ENSPREG00000021246	-	99	72.638	Poecilia_reticulata
ENSGACG00000001377	-	93	85.654	ENSPNYG00000023088	-	92	74.569	Pundamilia_nyererei
ENSGACG00000001377	-	99	81.818	ENSSDUG00000004892	-	96	58.857	Seriola_dumerili
ENSGACG00000001377	-	93	83.260	ENSSLDG00000005670	-	94	81.667	Seriola_lalandi_dorsalis
ENSGACG00000001377	-	93	78.307	ENSSPAG00000022219	-	71	78.307	Stegastes_partitus
ENSGACG00000001377	-	93	78.891	ENSTNIG00000011188	-	100	78.079	Tetraodon_nigroviridis
ENSGACG00000001377	-	94	74.775	ENSXCOG00000012645	-	61	74.775	Xiphophorus_couchianus
ENSGACG00000001377	-	99	72.826	ENSXMAG00000000866	-	65	72.826	Xiphophorus_maculatus