EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000001443 (Gene tree)
Gene ID: -
Gene Symbol: trnau1apa
Alias: trnau1ap|zgc:110606
Full Name: tRNA selenocysteine 1 associated protein 1a
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 5508 bases
Position: chrscaffold_111:127369-132876
Accession: ZDB-GENE-050522-502
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000001876	RRM_1	PF00076.22	2.6e-26	1	2
ENSGACP00000001876	RRM_1	PF00076.22	2.6e-26	2	2
ENSGACP00000001871	RRM_1	PF00076.22	2.7e-26	1	2
ENSGACP00000001871	RRM_1	PF00076.22	2.7e-26	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000001874	-	1186	-	ENSGACP00000001871	306 (aa)	-	G3N981
ENSGACT00000001879	-	1242	-	ENSGACP00000001876	304 (aa)	-	G3N986

Gene Model

Click here to download ENSGACG00000001443's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000001443's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000001443	trnau1apa	62	30.488	ENSGACG00000003771	pabpc1b	64	30.488
ENSGACG00000001443	trnau1apa	94	43.925	ENSGACG00000014944	trnau1apb	96	46.106
ENSGACG00000001443	trnau1apa	70	31.056	ENSGACG00000007179	pabpc4	58	30.488

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000001443	trnau1apa	95	59.932	ENSG00000180098	TRNAU1AP	98	60.274	Homo_sapiens
ENSGACG00000001443	trnau1apa	100	87.702	ENSAPOG00000007148	TRNAU1AP	100	87.702	Acanthochromis_polyacanthus
ENSGACG00000001443	trnau1apa	95	59.589	ENSAMEG00000011367	TRNAU1AP	98	60.274	Ailuropoda_melanoleuca
ENSGACG00000001443	trnau1apa	93	95.506	ENSACIG00000004161	trnau1apa	100	95.506	Amphilophus_citrinellus
ENSGACG00000001443	trnau1apa	100	90.228	ENSAOCG00000008056	trnau1apa	100	90.228	Amphiprion_ocellaris
ENSGACG00000001443	trnau1apa	100	90.228	ENSAPEG00000008868	trnau1apa	100	90.228	Amphiprion_percula
ENSGACG00000001443	trnau1apa	100	87.619	ENSATEG00000012140	trnau1apa	100	87.302	Anabas_testudineus
ENSGACG00000001443	trnau1apa	92	60.284	ENSAPLG00000002606	TRNAU1AP	99	60.638	Anas_platyrhynchos
ENSGACG00000001443	trnau1apa	71	40.826	ENSACAG00000004205	-	86	40.000	Anolis_carolinensis
ENSGACG00000001443	trnau1apa	94	50.345	ENSACAG00000003995	-	97	50.345	Anolis_carolinensis
ENSGACG00000001443	trnau1apa	95	59.932	ENSANAG00000018976	TRNAU1AP	98	60.274	Aotus_nancymaae
ENSGACG00000001443	trnau1apa	100	87.213	ENSACLG00000018515	trnau1apa	100	87.213	Astatotilapia_calliptera
ENSGACG00000001443	trnau1apa	99	54.369	ENSAMXG00000013750	trnau1apa	97	53.526	Astyanax_mexicanus
ENSGACG00000001443	trnau1apa	91	70.455	ENSAMXG00000029240	-	95	70.455	Astyanax_mexicanus
ENSGACG00000001443	trnau1apa	95	59.589	ENSBTAG00000010393	TRNAU1AP	98	59.932	Bos_taurus
ENSGACG00000001443	trnau1apa	95	59.932	ENSCJAG00000009717	TRNAU1AP	98	60.274	Callithrix_jacchus
ENSGACG00000001443	trnau1apa	95	59.932	ENSCAFG00000011735	TRNAU1AP	98	60.274	Canis_familiaris
ENSGACG00000001443	trnau1apa	95	59.932	ENSCAFG00020023584	TRNAU1AP	98	60.274	Canis_lupus_dingo
ENSGACG00000001443	trnau1apa	95	59.589	ENSCHIG00000023215	TRNAU1AP	98	59.932	Capra_hircus
ENSGACG00000001443	trnau1apa	95	59.932	ENSTSYG00000003506	TRNAU1AP	98	60.274	Carlito_syrichta
ENSGACG00000001443	trnau1apa	95	59.932	ENSCPOG00000001925	TRNAU1AP	98	60.274	Cavia_porcellus
ENSGACG00000001443	trnau1apa	95	59.932	ENSCCAG00000037506	TRNAU1AP	98	60.274	Cebus_capucinus
ENSGACG00000001443	trnau1apa	95	59.932	ENSCATG00000044617	TRNAU1AP	98	60.274	Cercocebus_atys
ENSGACG00000001443	trnau1apa	95	59.932	ENSCLAG00000008223	TRNAU1AP	98	60.274	Chinchilla_lanigera
ENSGACG00000001443	trnau1apa	95	59.932	ENSCSAG00000001014	TRNAU1AP	98	60.274	Chlorocebus_sabaeus
ENSGACG00000001443	trnau1apa	92	57.651	ENSCPBG00000000121	TRNAU1AP	98	59.075	Chrysemys_picta_bellii
ENSGACG00000001443	trnau1apa	55	47.059	ENSCSAVG00000011781	-	89	47.059	Ciona_savignyi
ENSGACG00000001443	trnau1apa	95	51.712	ENSCANG00000041949	TRNAU1AP	97	56.044	Colobus_angolensis_palliatus
ENSGACG00000001443	trnau1apa	95	59.932	ENSCGRG00001004713	Trnau1ap	98	60.274	Cricetulus_griseus_chok1gshd
ENSGACG00000001443	trnau1apa	95	59.932	ENSCGRG00000014532	Trnau1ap	98	60.274	Cricetulus_griseus_crigri
ENSGACG00000001443	trnau1apa	100	76.115	ENSCSEG00000006663	trnau1apa	100	75.556	Cynoglossus_semilaevis
ENSGACG00000001443	trnau1apa	99	78.431	ENSCVAG00000018069	trnau1apa	99	80.392	Cyprinodon_variegatus
ENSGACG00000001443	trnau1apa	99	52.104	ENSDARG00000101323	trnau1apa	95	51.911	Danio_rerio
ENSGACG00000001443	trnau1apa	95	59.932	ENSDNOG00000033009	TRNAU1AP	98	60.274	Dasypus_novemcinctus
ENSGACG00000001443	trnau1apa	57	60.694	ENSDNOG00000047959	-	89	59.884	Dasypus_novemcinctus
ENSGACG00000001443	trnau1apa	95	56.357	ENSDORG00000006349	Trnau1ap	97	61.017	Dipodomys_ordii
ENSGACG00000001443	trnau1apa	93	35.780	FBgn0031607	CG15440	96	34.154	Drosophila_melanogaster
ENSGACG00000001443	trnau1apa	81	57.028	ENSETEG00000012594	TRNAU1AP	97	57.430	Echinops_telfairi
ENSGACG00000001443	trnau1apa	57	45.455	ENSEBUG00000006349	-	59	44.565	Eptatretus_burgeri
ENSGACG00000001443	trnau1apa	95	59.932	ENSEASG00005010062	TRNAU1AP	98	60.274	Equus_asinus_asinus
ENSGACG00000001443	trnau1apa	95	59.932	ENSECAG00000012980	TRNAU1AP	98	60.274	Equus_caballus
ENSGACG00000001443	trnau1apa	100	75.570	ENSELUG00000017686	trnau1apa	100	77.597	Esox_lucius
ENSGACG00000001443	trnau1apa	93	79.545	ENSELUG00000022790	-	95	79.545	Esox_lucius
ENSGACG00000001443	trnau1apa	95	59.932	ENSFCAG00000013401	TRNAU1AP	98	60.274	Felis_catus
ENSGACG00000001443	trnau1apa	92	58.007	ENSFALG00000001371	TRNAU1AP	98	58.719	Ficedula_albicollis
ENSGACG00000001443	trnau1apa	95	59.932	ENSFDAG00000018599	TRNAU1AP	98	60.274	Fukomys_damarensis
ENSGACG00000001443	trnau1apa	78	85.306	ENSFHEG00000018232	trnau1apa	86	82.692	Fundulus_heteroclitus
ENSGACG00000001443	trnau1apa	100	67.532	ENSGMOG00000016508	trnau1apa	100	68.506	Gadus_morhua
ENSGACG00000001443	trnau1apa	95	58.219	ENSGALG00000001310	-	98	59.589	Gallus_gallus
ENSGACG00000001443	trnau1apa	69	40.187	ENSGALG00000012721	C2H6orf52	90	39.464	Gallus_gallus
ENSGACG00000001443	trnau1apa	80	86.531	ENSGAFG00000004928	trnau1apa	95	86.056	Gambusia_affinis
ENSGACG00000001443	trnau1apa	92	58.007	ENSGAGG00000004940	TRNAU1AP	98	58.571	Gopherus_agassizii
ENSGACG00000001443	trnau1apa	95	59.932	ENSGGOG00000003511	TRNAU1AP	98	60.274	Gorilla_gorilla
ENSGACG00000001443	trnau1apa	100	85.484	ENSHBUG00000002510	trnau1apa	100	85.484	Haplochromis_burtoni
ENSGACG00000001443	trnau1apa	95	59.932	ENSHGLG00000010380	TRNAU1AP	98	60.274	Heterocephalus_glaber_female
ENSGACG00000001443	trnau1apa	95	57.877	ENSHGLG00100012699	TRNAU1AP	98	58.219	Heterocephalus_glaber_male
ENSGACG00000001443	trnau1apa	99	75.000	ENSHCOG00000014770	trnau1apa	99	73.052	Hippocampus_comes
ENSGACG00000001443	trnau1apa	95	59.932	ENSSTOG00000000079	TRNAU1AP	98	60.274	Ictidomys_tridecemlineatus
ENSGACG00000001443	trnau1apa	95	59.589	ENSJJAG00000010128	Trnau1ap	98	60.825	Jaculus_jaculus
ENSGACG00000001443	trnau1apa	100	84.091	ENSKMAG00000001230	trnau1apa	100	84.091	Kryptolebias_marmoratus
ENSGACG00000001443	trnau1apa	100	82.540	ENSLBEG00000011683	trnau1apa	100	83.228	Labrus_bergylta
ENSGACG00000001443	trnau1apa	96	53.082	ENSLACG00000005541	TRNAU1AP	98	53.220	Latimeria_chalumnae
ENSGACG00000001443	trnau1apa	95	62.199	ENSLOCG00000004041	trnau1apa	98	61.092	Lepisosteus_oculatus
ENSGACG00000001443	trnau1apa	95	60.274	ENSLAFG00000007628	TRNAU1AP	98	60.616	Loxodonta_africana
ENSGACG00000001443	trnau1apa	95	59.932	ENSMFAG00000043751	TRNAU1AP	98	60.274	Macaca_fascicularis
ENSGACG00000001443	trnau1apa	95	59.932	ENSMMUG00000006561	TRNAU1AP	98	60.274	Macaca_mulatta
ENSGACG00000001443	trnau1apa	95	59.932	ENSMNEG00000044201	TRNAU1AP	98	60.274	Macaca_nemestrina
ENSGACG00000001443	trnau1apa	95	59.932	ENSMLEG00000015649	TRNAU1AP	98	60.274	Mandrillus_leucophaeus
ENSGACG00000001443	trnau1apa	99	89.068	ENSMAMG00000001247	trnau1apa	100	88.103	Mastacembelus_armatus
ENSGACG00000001443	trnau1apa	100	87.213	ENSMZEG00005017722	trnau1apa	100	87.213	Maylandia_zebra
ENSGACG00000001443	trnau1apa	93	58.596	ENSMGAG00000002105	TRNAU1AP	98	59.298	Meleagris_gallopavo
ENSGACG00000001443	trnau1apa	95	59.932	ENSMICG00000008386	TRNAU1AP	98	60.274	Microcebus_murinus
ENSGACG00000001443	trnau1apa	95	59.932	ENSMOCG00000011189	Trnau1ap	98	60.274	Microtus_ochrogaster
ENSGACG00000001443	trnau1apa	100	73.616	ENSMMOG00000012107	trnau1apa	100	73.616	Mola_mola
ENSGACG00000001443	trnau1apa	95	59.247	ENSMODG00000010927	TRNAU1AP	98	59.932	Monodelphis_domestica
ENSGACG00000001443	trnau1apa	100	90.645	ENSMALG00000016778	trnau1apa	100	90.645	Monopterus_albus
ENSGACG00000001443	trnau1apa	95	59.932	MGP_CAROLIEiJ_G0026563	Trnau1ap	97	67.816	Mus_caroli
ENSGACG00000001443	trnau1apa	95	59.932	ENSMUSG00000028898	Trnau1ap	97	67.816	Mus_musculus
ENSGACG00000001443	trnau1apa	95	59.932	MGP_PahariEiJ_G0028896	Trnau1ap	97	67.816	Mus_pahari
ENSGACG00000001443	trnau1apa	95	59.932	MGP_SPRETEiJ_G0027544	Trnau1ap	97	67.816	Mus_spretus
ENSGACG00000001443	trnau1apa	95	60.274	ENSMPUG00000015511	TRNAU1AP	98	60.616	Mustela_putorius_furo
ENSGACG00000001443	trnau1apa	95	59.932	ENSMLUG00000012586	TRNAU1AP	98	60.274	Myotis_lucifugus
ENSGACG00000001443	trnau1apa	95	59.589	ENSNGAG00000015881	Trnau1ap	98	61.168	Nannospalax_galili
ENSGACG00000001443	trnau1apa	100	74.675	ENSNBRG00000001758	trnau1apa	99	74.675	Neolamprologus_brichardi
ENSGACG00000001443	trnau1apa	95	59.932	ENSNLEG00000009822	TRNAU1AP	98	60.274	Nomascus_leucogenys
ENSGACG00000001443	trnau1apa	93	58.596	ENSMEUG00000006117	TRNAU1AP	98	59.298	Notamacropus_eugenii
ENSGACG00000001443	trnau1apa	54	62.069	ENSOPRG00000007084	-	57	62.069	Ochotona_princeps
ENSGACG00000001443	trnau1apa	95	59.932	ENSODEG00000002970	TRNAU1AP	98	60.274	Octodon_degus
ENSGACG00000001443	trnau1apa	80	88.163	ENSONIG00000004715	trnau1apa	97	88.163	Oreochromis_niloticus
ENSGACG00000001443	trnau1apa	94	47.203	ENSOANG00000005325	-	96	47.387	Ornithorhynchus_anatinus
ENSGACG00000001443	trnau1apa	86	48.855	ENSOCUG00000006834	-	97	48.263	Oryctolagus_cuniculus
ENSGACG00000001443	trnau1apa	95	51.195	ENSOCUG00000002353	-	98	51.195	Oryctolagus_cuniculus
ENSGACG00000001443	trnau1apa	95	58.562	ENSOCUG00000011704	-	98	58.904	Oryctolagus_cuniculus
ENSGACG00000001443	trnau1apa	100	80.456	ENSORLG00000010428	trnau1apa	100	81.759	Oryzias_latipes
ENSGACG00000001443	trnau1apa	100	80.456	ENSORLG00020000926	trnau1ap	100	81.759	Oryzias_latipes_hni
ENSGACG00000001443	trnau1apa	100	80.456	ENSORLG00015009858	trnau1ap	100	81.759	Oryzias_latipes_hsok
ENSGACG00000001443	trnau1apa	100	79.153	ENSOMEG00000007873	trnau1apa	100	80.130	Oryzias_melastigma
ENSGACG00000001443	trnau1apa	95	59.932	ENSOGAG00000002274	TRNAU1AP	98	60.274	Otolemur_garnettii
ENSGACG00000001443	trnau1apa	95	59.589	ENSOARG00000002843	TRNAU1AP	98	59.932	Ovis_aries
ENSGACG00000001443	trnau1apa	95	59.932	ENSPPAG00000033927	TRNAU1AP	98	60.274	Pan_paniscus
ENSGACG00000001443	trnau1apa	95	59.932	ENSPPRG00000004416	TRNAU1AP	98	60.274	Panthera_pardus
ENSGACG00000001443	trnau1apa	95	59.932	ENSPTIG00000016677	TRNAU1AP	98	60.274	Panthera_tigris_altaica
ENSGACG00000001443	trnau1apa	88	52.941	ENSPTRG00000000434	-	93	53.676	Pan_troglodytes
ENSGACG00000001443	trnau1apa	95	59.932	ENSPANG00000016019	TRNAU1AP	98	60.274	Papio_anubis
ENSGACG00000001443	trnau1apa	93	79.545	ENSPKIG00000022205	-	96	79.545	Paramormyrops_kingsleyae
ENSGACG00000001443	trnau1apa	93	59.516	ENSPKIG00000015511	trnau1apa	93	58.885	Paramormyrops_kingsleyae
ENSGACG00000001443	trnau1apa	92	58.363	ENSPSIG00000006864	TRNAU1AP	98	58.719	Pelodiscus_sinensis
ENSGACG00000001443	trnau1apa	99	68.092	ENSPMGG00000023893	trnau1apa	98	66.118	Periophthalmus_magnuspinnatus
ENSGACG00000001443	trnau1apa	95	59.589	ENSPEMG00000007877	Trnau1ap	98	59.932	Peromyscus_maniculatus_bairdii
ENSGACG00000001443	trnau1apa	56	52.023	ENSPMAG00000000592	trnau1apa	95	52.023	Petromyzon_marinus
ENSGACG00000001443	trnau1apa	74	52.863	ENSPMAG00000005934	trnau1apa	96	50.655	Petromyzon_marinus
ENSGACG00000001443	trnau1apa	99	81.699	ENSPFOG00000008100	trnau1apa	99	81.699	Poecilia_formosa
ENSGACG00000001443	trnau1apa	95	80.952	ENSPLAG00000010236	trnau1apa	99	80.952	Poecilia_latipinna
ENSGACG00000001443	trnau1apa	99	79.672	ENSPMEG00000016387	trnau1apa	97	79.672	Poecilia_mexicana
ENSGACG00000001443	trnau1apa	86	86.364	ENSPREG00000019821	trnau1apa	95	86.364	Poecilia_reticulata
ENSGACG00000001443	trnau1apa	86	51.894	ENSPPYG00000001639	-	98	52.273	Pongo_abelii
ENSGACG00000001443	trnau1apa	95	59.932	ENSPCOG00000027712	-	98	60.274	Propithecus_coquereli
ENSGACG00000001443	trnau1apa	94	49.477	ENSPCOG00000023470	-	98	49.477	Propithecus_coquereli
ENSGACG00000001443	trnau1apa	95	59.932	ENSPVAG00000017214	TRNAU1AP	98	60.274	Pteropus_vampyrus
ENSGACG00000001443	trnau1apa	100	85.806	ENSPNYG00000010130	trnau1apa	99	87.549	Pundamilia_nyererei
ENSGACG00000001443	trnau1apa	99	53.094	ENSPNAG00000024905	trnau1apa	97	53.094	Pygocentrus_nattereri
ENSGACG00000001443	trnau1apa	92	55.872	ENSRNOG00000055344	Trnau1ap	92	56.228	Rattus_norvegicus
ENSGACG00000001443	trnau1apa	95	59.932	ENSRBIG00000029083	TRNAU1AP	98	60.274	Rhinopithecus_bieti
ENSGACG00000001443	trnau1apa	95	59.932	ENSRROG00000029128	TRNAU1AP	98	60.274	Rhinopithecus_roxellana
ENSGACG00000001443	trnau1apa	95	59.932	ENSSBOG00000021299	TRNAU1AP	98	60.274	Saimiri_boliviensis_boliviensis
ENSGACG00000001443	trnau1apa	95	59.247	ENSSHAG00000008108	TRNAU1AP	98	59.932	Sarcophilus_harrisii
ENSGACG00000001443	trnau1apa	100	86.452	ENSSMAG00000020851	trnau1apa	100	87.742	Scophthalmus_maximus
ENSGACG00000001443	trnau1apa	100	90.064	ENSSDUG00000011734	trnau1apa	100	90.064	Seriola_dumerili
ENSGACG00000001443	trnau1apa	100	75.658	ENSSLDG00000012101	trnau1apa	100	75.163	Seriola_lalandi_dorsalis
ENSGACG00000001443	trnau1apa	93	60.000	ENSSARG00000007536	TRNAU1AP	98	60.351	Sorex_araneus
ENSGACG00000001443	trnau1apa	62	53.684	ENSSPUG00000010415	-	99	51.053	Sphenodon_punctatus
ENSGACG00000001443	trnau1apa	98	55.667	ENSSPUG00000010400	-	99	56.187	Sphenodon_punctatus
ENSGACG00000001443	trnau1apa	100	90.909	ENSSPAG00000005029	trnau1apa	100	90.584	Stegastes_partitus
ENSGACG00000001443	trnau1apa	95	59.932	ENSSSCG00000030284	TRNAU1AP	98	60.274	Sus_scrofa
ENSGACG00000001443	trnau1apa	93	58.947	ENSTGUG00000000735	-	98	60.000	Taeniopygia_guttata
ENSGACG00000001443	trnau1apa	69	42.396	ENSTGUG00000005908	-	99	42.396	Taeniopygia_guttata
ENSGACG00000001443	trnau1apa	100	84.641	ENSTRUG00000003352	trnau1apa	100	82.680	Takifugu_rubripes
ENSGACG00000001443	trnau1apa	100	78.247	ENSTNIG00000006129	trnau1apa	100	78.247	Tetraodon_nigroviridis
ENSGACG00000001443	trnau1apa	81	56.098	ENSTBEG00000008049	-	96	55.061	Tupaia_belangeri
ENSGACG00000001443	trnau1apa	95	59.932	ENSTTRG00000001854	TRNAU1AP	98	60.274	Tursiops_truncatus
ENSGACG00000001443	trnau1apa	92	59.786	ENSUAMG00000008789	TRNAU1AP	98	60.142	Ursus_americanus
ENSGACG00000001443	trnau1apa	95	59.932	ENSUMAG00000011068	TRNAU1AP	98	60.274	Ursus_maritimus
ENSGACG00000001443	trnau1apa	96	52.145	ENSVPAG00000006778	TRNAU1AP	98	52.961	Vicugna_pacos
ENSGACG00000001443	trnau1apa	95	58.824	ENSVVUG00000012518	TRNAU1AP	91	59.450	Vulpes_vulpes
ENSGACG00000001443	trnau1apa	99	80.719	ENSXMAG00000017361	trnau1apa	99	82.026	Xiphophorus_maculatus