EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000001657 (Gene tree)
Gene ID: -
Gene Symbol: rpusd4
Alias: si:ch211-14i3.3|zgc:92006
Full Name: RNA pseudouridine synthase D4
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 2726 bases
Position: chrscaffold_27:4825925-4828650
Accession: ZDB-GENE-040801-238
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000002165	PseudoU_synth_2	PF00849.22	1.7e-26	1	1
ENSGACP00000002166	PseudoU_synth_2	PF00849.22	2.4e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000002172	-	1008	-	ENSGACP00000002166	336 (aa)	-	G3NA24
ENSGACT00000002171	-	855	-	ENSGACP00000002165	285 (aa)	-	G3NA23

Gene Model

Click here to download ENSGACG00000001657's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000001657's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000001657	rpusd4	97	49.286	ENSG00000165526	RPUSD4	89	47.353	Homo_sapiens
ENSGACG00000001657	rpusd4	97	78.700	ENSAPOG00000011024	rpusd4	84	76.506	Acanthochromis_polyacanthus
ENSGACG00000001657	rpusd4	100	49.653	ENSAMEG00000000127	-	87	49.102	Ailuropoda_melanoleuca
ENSGACG00000001657	rpusd4	68	52.128	ENSAMEG00000005953	-	90	52.128	Ailuropoda_melanoleuca
ENSGACG00000001657	rpusd4	97	74.729	ENSACIG00000003533	rpusd4	95	73.292	Amphilophus_citrinellus
ENSGACG00000001657	rpusd4	100	75.595	ENSAOCG00000015409	rpusd4	84	75.595	Amphiprion_ocellaris
ENSGACG00000001657	rpusd4	100	75.595	ENSAPEG00000018935	rpusd4	84	75.595	Amphiprion_percula
ENSGACG00000001657	rpusd4	99	76.119	ENSATEG00000008059	rpusd4	83	75.821	Anabas_testudineus
ENSGACG00000001657	rpusd4	96	50.725	ENSAPLG00000013250	RPUSD4	96	52.297	Anas_platyrhynchos
ENSGACG00000001657	rpusd4	97	50.890	ENSACAG00000000189	RPUSD4	81	51.678	Anolis_carolinensis
ENSGACG00000001657	rpusd4	100	47.353	ENSANAG00000024050	RPUSD4	90	47.353	Aotus_nancymaae
ENSGACG00000001657	rpusd4	97	78.339	ENSACLG00000020996	rpusd4	85	75.529	Astatotilapia_calliptera
ENSGACG00000001657	rpusd4	99	58.160	ENSAMXG00000031479	rpusd4	95	57.567	Astyanax_mexicanus
ENSGACG00000001657	rpusd4	99	50.345	ENSBTAG00000020900	RPUSD4	89	48.673	Bos_taurus
ENSGACG00000001657	rpusd4	100	47.353	ENSCJAG00000042850	RPUSD4	84	47.353	Callithrix_jacchus
ENSGACG00000001657	rpusd4	100	51.042	ENSCAFG00000010488	RPUSD4	85	50.920	Canis_familiaris
ENSGACG00000001657	rpusd4	100	51.042	ENSCAFG00020010621	RPUSD4	85	50.920	Canis_lupus_dingo
ENSGACG00000001657	rpusd4	99	49.655	ENSCHIG00000009975	RPUSD4	87	48.512	Capra_hircus
ENSGACG00000001657	rpusd4	100	50.694	ENSTSYG00000008456	RPUSD4	89	49.853	Carlito_syrichta
ENSGACG00000001657	rpusd4	85	49.383	ENSCAPG00000006040	RPUSD4	92	49.383	Cavia_aperea
ENSGACG00000001657	rpusd4	100	50.588	ENSCPOG00000014971	RPUSD4	89	50.442	Cavia_porcellus
ENSGACG00000001657	rpusd4	100	47.353	ENSCCAG00000027838	RPUSD4	90	47.353	Cebus_capucinus
ENSGACG00000001657	rpusd4	97	49.643	ENSCATG00000041570	RPUSD4	77	50.842	Cercocebus_atys
ENSGACG00000001657	rpusd4	100	50.882	ENSCLAG00000016553	RPUSD4	89	50.588	Chinchilla_lanigera
ENSGACG00000001657	rpusd4	100	47.353	ENSCSAG00000002274	RPUSD4	77	51.178	Chlorocebus_sabaeus
ENSGACG00000001657	rpusd4	95	51.636	ENSCHOG00000010249	RPUSD4	95	51.636	Choloepus_hoffmanni
ENSGACG00000001657	rpusd4	96	51.079	ENSCPBG00000011175	RPUSD4	98	52.431	Chrysemys_picta_bellii
ENSGACG00000001657	rpusd4	95	39.643	ENSCSAVG00000000872	-	63	36.391	Ciona_savignyi
ENSGACG00000001657	rpusd4	99	49.474	ENSCANG00000039684	RPUSD4	77	51.178	Colobus_angolensis_palliatus
ENSGACG00000001657	rpusd4	100	50.000	ENSCGRG00001024141	Rpusd4	89	50.000	Cricetulus_griseus_chok1gshd
ENSGACG00000001657	rpusd4	100	50.000	ENSCGRG00000014415	Rpusd4	89	50.000	Cricetulus_griseus_crigri
ENSGACG00000001657	rpusd4	57	63.776	ENSCSEG00000006462	-	86	63.776	Cynoglossus_semilaevis
ENSGACG00000001657	rpusd4	100	72.700	ENSCVAG00000000392	rpusd4	96	72.107	Cyprinodon_variegatus
ENSGACG00000001657	rpusd4	98	74.643	ENSCVAG00000008761	rpusd4	86	71.810	Cyprinodon_variegatus
ENSGACG00000001657	rpusd4	97	60.932	ENSDARG00000012674	rpusd4	90	57.716	Danio_rerio
ENSGACG00000001657	rpusd4	98	51.568	ENSDNOG00000020026	RPUSD4	87	50.450	Dasypus_novemcinctus
ENSGACG00000001657	rpusd4	99	49.310	ENSDORG00000016717	Rpusd4	77	51.515	Dipodomys_ordii
ENSGACG00000001657	rpusd4	99	50.595	ENSETEG00000013953	RPUSD4	87	50.298	Echinops_telfairi
ENSGACG00000001657	rpusd4	100	50.000	ENSEASG00005022982	RPUSD4	88	49.558	Equus_asinus_asinus
ENSGACG00000001657	rpusd4	100	50.347	ENSECAG00000000557	RPUSD4	88	49.853	Equus_caballus
ENSGACG00000001657	rpusd4	79	55.682	ENSEEUG00000014036	RPUSD4	70	55.682	Erinaceus_europaeus
ENSGACG00000001657	rpusd4	97	64.875	ENSELUG00000008075	rpusd4	90	60.231	Esox_lucius
ENSGACG00000001657	rpusd4	100	50.000	ENSFCAG00000029789	RPUSD4	87	49.701	Felis_catus
ENSGACG00000001657	rpusd4	97	48.736	ENSFALG00000005171	RPUSD4	95	47.222	Ficedula_albicollis
ENSGACG00000001657	rpusd4	100	48.235	ENSFDAG00000014307	RPUSD4	90	48.235	Fukomys_damarensis
ENSGACG00000001657	rpusd4	100	72.700	ENSFHEG00000004329	rpusd4	88	72.107	Fundulus_heteroclitus
ENSGACG00000001657	rpusd4	96	63.273	ENSGMOG00000017726	rpusd4	97	60.550	Gadus_morhua
ENSGACG00000001657	rpusd4	97	51.613	ENSGALG00000024326	RPUSD4	93	48.193	Gallus_gallus
ENSGACG00000001657	rpusd4	97	75.090	ENSGAFG00000021559	rpusd4	88	70.175	Gambusia_affinis
ENSGACG00000001657	rpusd4	99	49.405	ENSGAGG00000000132	RPUSD4	81	52.703	Gopherus_agassizii
ENSGACG00000001657	rpusd4	97	49.286	ENSGGOG00000016494	RPUSD4	87	47.904	Gorilla_gorilla
ENSGACG00000001657	rpusd4	97	78.339	ENSHBUG00000022838	rpusd4	85	75.529	Haplochromis_burtoni
ENSGACG00000001657	rpusd4	100	49.412	ENSHGLG00000002285	RPUSD4	89	49.412	Heterocephalus_glaber_female
ENSGACG00000001657	rpusd4	100	49.412	ENSHGLG00100006385	RPUSD4	89	49.412	Heterocephalus_glaber_male
ENSGACG00000001657	rpusd4	100	70.238	ENSHCOG00000006612	rpusd4	86	70.536	Hippocampus_comes
ENSGACG00000001657	rpusd4	99	58.209	ENSIPUG00000023879	rusd4	86	57.612	Ictalurus_punctatus
ENSGACG00000001657	rpusd4	100	50.442	ENSSTOG00000025280	RPUSD4	92	50.442	Ictidomys_tridecemlineatus
ENSGACG00000001657	rpusd4	100	50.147	ENSJJAG00000018673	Rpusd4	90	50.147	Jaculus_jaculus
ENSGACG00000001657	rpusd4	98	72.036	ENSKMAG00000021805	rpusd4	86	71.733	Kryptolebias_marmoratus
ENSGACG00000001657	rpusd4	98	78.419	ENSLBEG00000020394	rpusd4	92	77.914	Labrus_bergylta
ENSGACG00000001657	rpusd4	96	52.347	ENSLACG00000011028	RPUSD4	82	51.840	Latimeria_chalumnae
ENSGACG00000001657	rpusd4	99	44.282	ENSLOCG00000003124	rpusd4	90	44.282	Lepisosteus_oculatus
ENSGACG00000001657	rpusd4	100	49.306	ENSLAFG00000005211	RPUSD4	100	42.034	Loxodonta_africana
ENSGACG00000001657	rpusd4	97	50.000	ENSMFAG00000039513	RPUSD4	77	51.178	Macaca_fascicularis
ENSGACG00000001657	rpusd4	97	49.643	ENSMMUG00000007933	RPUSD4	77	50.842	Macaca_mulatta
ENSGACG00000001657	rpusd4	97	50.357	ENSMNEG00000027414	RPUSD4	77	51.515	Macaca_nemestrina
ENSGACG00000001657	rpusd4	97	50.000	ENSMLEG00000042461	RPUSD4	77	51.178	Mandrillus_leucophaeus
ENSGACG00000001657	rpusd4	100	75.294	ENSMAMG00000023839	rpusd4	88	74.412	Mastacembelus_armatus
ENSGACG00000001657	rpusd4	97	78.339	ENSMZEG00005011999	rpusd4	85	75.529	Maylandia_zebra
ENSGACG00000001657	rpusd4	97	50.179	ENSMGAG00000000840	RPUSD4	87	51.237	Meleagris_gallopavo
ENSGACG00000001657	rpusd4	97	50.714	ENSMAUG00000010280	Rpusd4	89	49.412	Mesocricetus_auratus
ENSGACG00000001657	rpusd4	97	51.786	ENSMICG00000015979	RPUSD4	88	53.199	Microcebus_murinus
ENSGACG00000001657	rpusd4	100	48.529	ENSMOCG00000000661	Rpusd4	89	48.235	Microtus_ochrogaster
ENSGACG00000001657	rpusd4	97	76.895	ENSMMOG00000021731	rpusd4	89	77.778	Mola_mola
ENSGACG00000001657	rpusd4	91	51.331	ENSMODG00000004521	RPUSD4	71	52.297	Monodelphis_domestica
ENSGACG00000001657	rpusd4	98	77.857	ENSMALG00000005839	rpusd4	90	79.125	Monopterus_albus
ENSGACG00000001657	rpusd4	97	50.000	MGP_CAROLIEiJ_G0031954	Rpusd4	85	49.693	Mus_caroli
ENSGACG00000001657	rpusd4	97	50.714	ENSMUSG00000032044	Rpusd4	85	50.307	Mus_musculus
ENSGACG00000001657	rpusd4	97	50.357	MGP_PahariEiJ_G0014819	Rpusd4	85	49.693	Mus_pahari
ENSGACG00000001657	rpusd4	98	49.401	MGP_SPRETEiJ_G0033078	Rpusd4	87	49.401	Mus_spretus
ENSGACG00000001657	rpusd4	100	49.653	ENSMPUG00000006608	RPUSD4	88	49.102	Mustela_putorius_furo
ENSGACG00000001657	rpusd4	97	51.786	ENSMLUG00000017328	-	77	53.199	Myotis_lucifugus
ENSGACG00000001657	rpusd4	90	50.193	ENSMLUG00000029348	-	100	50.193	Myotis_lucifugus
ENSGACG00000001657	rpusd4	100	50.588	ENSNGAG00000020847	Rpusd4	89	50.294	Nannospalax_galili
ENSGACG00000001657	rpusd4	97	78.339	ENSNBRG00000005207	rpusd4	95	74.468	Neolamprologus_brichardi
ENSGACG00000001657	rpusd4	97	49.286	ENSNLEG00000007465	RPUSD4	87	47.305	Nomascus_leucogenys
ENSGACG00000001657	rpusd4	99	49.825	ENSMEUG00000004370	RPUSD4	79	52.189	Notamacropus_eugenii
ENSGACG00000001657	rpusd4	51	46.528	ENSOPRG00000013141	-	53	46.528	Ochotona_princeps
ENSGACG00000001657	rpusd4	100	49.412	ENSODEG00000004577	RPUSD4	89	49.412	Octodon_degus
ENSGACG00000001657	rpusd4	97	77.617	ENSONIG00000018879	rpusd4	90	73.874	Oreochromis_niloticus
ENSGACG00000001657	rpusd4	95	46.403	ENSOANG00000007247	RPUSD4	95	46.512	Ornithorhynchus_anatinus
ENSGACG00000001657	rpusd4	100	50.588	ENSOCUG00000017039	RPUSD4	89	50.588	Oryctolagus_cuniculus
ENSGACG00000001657	rpusd4	98	72.598	ENSORLG00000002750	rpusd4	90	71.125	Oryzias_latipes
ENSGACG00000001657	rpusd4	98	72.242	ENSORLG00020002044	rpusd4	83	69.670	Oryzias_latipes_hni
ENSGACG00000001657	rpusd4	98	71.886	ENSORLG00015020034	rpusd4	83	69.369	Oryzias_latipes_hsok
ENSGACG00000001657	rpusd4	98	75.445	ENSOMEG00000004861	rpusd4	83	72.239	Oryzias_melastigma
ENSGACG00000001657	rpusd4	97	53.047	ENSOGAG00000008922	RPUSD4	77	54.209	Otolemur_garnettii
ENSGACG00000001657	rpusd4	99	49.655	ENSOARG00000012238	RPUSD4	87	48.512	Ovis_aries
ENSGACG00000001657	rpusd4	97	49.286	ENSPPAG00000042883	RPUSD4	81	47.904	Pan_paniscus
ENSGACG00000001657	rpusd4	100	50.000	ENSPPRG00000003081	RPUSD4	87	49.701	Panthera_pardus
ENSGACG00000001657	rpusd4	100	50.000	ENSPTIG00000012059	RPUSD4	87	49.701	Panthera_tigris_altaica
ENSGACG00000001657	rpusd4	97	49.286	ENSPTRG00000004454	RPUSD4	87	47.904	Pan_troglodytes
ENSGACG00000001657	rpusd4	97	50.000	ENSPANG00000015040	RPUSD4	77	51.178	Papio_anubis
ENSGACG00000001657	rpusd4	98	59.697	ENSPKIG00000023986	rpusd4	84	59.091	Paramormyrops_kingsleyae
ENSGACG00000001657	rpusd4	99	50.699	ENSPSIG00000014268	RPUSD4	93	52.365	Pelodiscus_sinensis
ENSGACG00000001657	rpusd4	97	68.459	ENSPMGG00000002806	rpusd4	91	65.846	Periophthalmus_magnuspinnatus
ENSGACG00000001657	rpusd4	100	42.647	ENSPEMG00000000278	Rpusd4	88	42.647	Peromyscus_maniculatus_bairdii
ENSGACG00000001657	rpusd4	97	40.260	ENSPMAG00000008183	rpusd4	94	40.000	Petromyzon_marinus
ENSGACG00000001657	rpusd4	100	48.529	ENSPCIG00000010212	RPUSD4	80	51.515	Phascolarctos_cinereus
ENSGACG00000001657	rpusd4	97	75.269	ENSPFOG00000019030	rpusd4	89	70.501	Poecilia_formosa
ENSGACG00000001657	rpusd4	97	76.534	ENSPLAG00000016848	rpusd4	86	71.513	Poecilia_latipinna
ENSGACG00000001657	rpusd4	97	76.173	ENSPMEG00000017534	rpusd4	86	71.217	Poecilia_mexicana
ENSGACG00000001657	rpusd4	94	74.539	ENSPREG00000005689	rpusd4	87	69.760	Poecilia_reticulata
ENSGACG00000001657	rpusd4	97	48.929	ENSPPYG00000004043	RPUSD4	77	50.168	Pongo_abelii
ENSGACG00000001657	rpusd4	79	53.409	ENSPCAG00000000753	RPUSD4	71	53.409	Procavia_capensis
ENSGACG00000001657	rpusd4	98	48.601	ENSPCOG00000020694	RPUSD4	88	47.447	Propithecus_coquereli
ENSGACG00000001657	rpusd4	100	49.412	ENSPVAG00000000988	RPUSD4	89	49.412	Pteropus_vampyrus
ENSGACG00000001657	rpusd4	97	77.978	ENSPNYG00000009652	rpusd4	85	75.227	Pundamilia_nyererei
ENSGACG00000001657	rpusd4	99	57.186	ENSPNAG00000012264	rpusd4	88	56.587	Pygocentrus_nattereri
ENSGACG00000001657	rpusd4	97	51.071	ENSRNOG00000011567	Rpusd4	85	50.307	Rattus_norvegicus
ENSGACG00000001657	rpusd4	96	50.181	ENSRBIG00000034842	RPUSD4	77	50.842	Rhinopithecus_bieti
ENSGACG00000001657	rpusd4	96	50.181	ENSRROG00000039753	RPUSD4	77	50.842	Rhinopithecus_roxellana
ENSGACG00000001657	rpusd4	100	47.059	ENSSBOG00000030413	RPUSD4	90	47.059	Saimiri_boliviensis_boliviensis
ENSGACG00000001657	rpusd4	97	48.929	ENSSHAG00000008304	RPUSD4	97	50.505	Sarcophilus_harrisii
ENSGACG00000001657	rpusd4	97	59.712	ENSSFOG00015006203	rpusd4	88	57.317	Scleropages_formosus
ENSGACG00000001657	rpusd4	97	78.700	ENSSMAG00000020978	rpusd4	88	75.076	Scophthalmus_maximus
ENSGACG00000001657	rpusd4	97	82.310	ENSSDUG00000013399	rpusd4	88	78.614	Seriola_dumerili
ENSGACG00000001657	rpusd4	97	82.671	ENSSLDG00000023507	rpusd4	88	79.217	Seriola_lalandi_dorsalis
ENSGACG00000001657	rpusd4	97	51.786	ENSSPUG00000001401	RPUSD4	81	53.041	Sphenodon_punctatus
ENSGACG00000001657	rpusd4	100	78.338	ENSSPAG00000012163	rpusd4	87	77.448	Stegastes_partitus
ENSGACG00000001657	rpusd4	99	50.000	ENSSSCG00000015233	RPUSD4	89	48.378	Sus_scrofa
ENSGACG00000001657	rpusd4	96	50.182	ENSTGUG00000000773	RPUSD4	98	50.508	Taeniopygia_guttata
ENSGACG00000001657	rpusd4	97	75.812	ENSTRUG00000012283	rpusd4	84	72.477	Takifugu_rubripes
ENSGACG00000001657	rpusd4	100	70.833	ENSTNIG00000014676	rpusd4	86	69.940	Tetraodon_nigroviridis
ENSGACG00000001657	rpusd4	100	49.263	ENSTTRG00000001555	RPUSD4	89	49.263	Tursiops_truncatus
ENSGACG00000001657	rpusd4	54	49.682	ENSUAMG00000005500	-	97	49.682	Ursus_americanus
ENSGACG00000001657	rpusd4	98	50.523	ENSUMAG00000002219	RPUSD4	87	49.102	Ursus_maritimus
ENSGACG00000001657	rpusd4	72	48.560	ENSVPAG00000001066	RPUSD4	90	48.560	Vicugna_pacos
ENSGACG00000001657	rpusd4	100	51.042	ENSVVUG00000020101	RPUSD4	85	50.920	Vulpes_vulpes
ENSGACG00000001657	rpusd4	97	75.451	ENSXCOG00000004676	rpusd4	90	69.298	Xiphophorus_couchianus
ENSGACG00000001657	rpusd4	97	75.451	ENSXMAG00000023351	rpusd4	88	69.883	Xiphophorus_maculatus