EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000001725 (Gene tree)
Gene ID: -
Gene Symbol: zgc:101559
Alias: -
Full Name: zgc:101559
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Minus strand
Length: 1643 bases
Position: chrgroupXVI:2402132-2403774
Accession: ZDB-GENE-041114-122
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000002250	MMR_HSR1	PF01926.23	1.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000002256	-	735	-	ENSGACP00000002250	233 (aa)	-	G3NAA5

Gene Model

Click here to download ENSGACG00000001725's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000001725's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000001725	zgc:101559	73	35.465	ENSGACG00000016639	rab12	77	35.465
ENSGACG00000001725	zgc:101559	53	37.008	ENSGACG00000010473	RAB29	61	37.008
ENSGACG00000001725	zgc:101559	64	36.842	ENSGACG00000014578	RAB9A	76	36.842
ENSGACG00000001725	zgc:101559	63	39.456	ENSGACG00000001694	rab18a	70	39.456
ENSGACG00000001725	zgc:101559	64	38.514	ENSGACG00000013611	-	72	38.514
ENSGACG00000001725	zgc:101559	82	37.949	ENSGACG00000000807	-	86	37.949
ENSGACG00000001725	zgc:101559	68	39.752	ENSGACG00000005397	si:ch211-247i17.1	91	39.752
ENSGACG00000001725	zgc:101559	73	39.181	ENSGACG00000004997	rab5aa	77	39.181
ENSGACG00000001725	zgc:101559	71	35.928	ENSGACG00000014678	rab36	62	35.928
ENSGACG00000001725	zgc:101559	70	31.138	ENSGACG00000015457	dnajc27	76	31.138
ENSGACG00000001725	zgc:101559	81	33.673	ENSGACG00000011661	kras	98	33.673
ENSGACG00000001725	zgc:101559	72	38.323	ENSGACG00000016799	-	94	38.323
ENSGACG00000001725	zgc:101559	66	35.032	ENSGACG00000003972	rab9a	76	35.032
ENSGACG00000001725	zgc:101559	69	44.099	ENSGACG00000020356	rab6a	75	44.099
ENSGACG00000001725	zgc:101559	80	35.294	ENSGACG00000011340	hrasb	90	35.593
ENSGACG00000001725	zgc:101559	63	30.872	ENSGACG00000007951	nkiras1	77	30.872
ENSGACG00000001725	zgc:101559	64	36.184	ENSGACG00000018291	rab9b	74	36.184
ENSGACG00000001725	zgc:101559	72	47.904	ENSGACG00000012006	rab30	81	47.904
ENSGACG00000001725	zgc:101559	72	45.238	ENSGACG00000000789	rab1ba	80	45.238
ENSGACG00000001725	zgc:101559	78	65.385	ENSGACG00000018745	rab33a	77	65.746
ENSGACG00000001725	zgc:101559	70	42.073	ENSGACG00000011925	rab13	89	41.081
ENSGACG00000001725	zgc:101559	85	63.131	ENSGACG00000019540	rab33ba	86	63.131
ENSGACG00000001725	zgc:101559	63	42.857	ENSGACG00000016395	rab18b	71	42.857
ENSGACG00000001725	zgc:101559	85	31.373	ENSGACG00000011607	rab32b	91	31.373
ENSGACG00000001725	zgc:101559	72	45.833	ENSGACG00000003864	rab1ab	80	45.833
ENSGACG00000001725	zgc:101559	74	36.416	ENSGACG00000013259	rab11al	79	36.416
ENSGACG00000001725	zgc:101559	84	31.925	ENSGACG00000018711	rasl11a	86	31.925
ENSGACG00000001725	zgc:101559	52	30.000	ENSGACG00000007387	rabl3	98	30.000
ENSGACG00000001725	zgc:101559	72	40.476	ENSGACG00000014905	rab2a	76	40.476
ENSGACG00000001725	zgc:101559	64	40.541	ENSGACG00000019767	-	74	40.541
ENSGACG00000001725	zgc:101559	79	36.022	ENSGACG00000006162	-	82	36.022
ENSGACG00000001725	zgc:101559	72	35.714	ENSGACG00000016164	rab4a	74	35.714
ENSGACG00000001725	zgc:101559	72	42.105	ENSGACG00000005608	rab22a	84	42.105
ENSGACG00000001725	zgc:101559	73	46.471	ENSGACG00000013548	rab35b	88	44.444
ENSGACG00000001725	zgc:101559	63	38.514	ENSGACG00000016680	rheb	79	38.514
ENSGACG00000001725	zgc:101559	82	30.412	ENSGACG00000019134	si:cabz01085950.1	94	30.412
ENSGACG00000001725	zgc:101559	66	43.871	ENSGACG00000001950	RAB39B	72	43.871
ENSGACG00000001725	zgc:101559	79	44.865	ENSGACG00000018847	-	80	44.865
ENSGACG00000001725	zgc:101559	69	36.420	ENSGACG00000000729	rhebl1	81	36.420
ENSGACG00000001725	zgc:101559	77	31.667	ENSGACG00000006151	rab23	77	32.292
ENSGACG00000001725	zgc:101559	58	32.353	ENSGACG00000012474	rabl2	60	32.353
ENSGACG00000001725	zgc:101559	63	43.537	ENSGACG00000005979	RAB15	70	43.537
ENSGACG00000001725	zgc:101559	74	41.040	ENSGACG00000020437	-	85	41.040
ENSGACG00000001725	zgc:101559	79	36.559	ENSGACG00000008659	rab5c	82	36.559
ENSGACG00000001725	zgc:101559	81	41.919	ENSGACG00000017153	rab41	91	41.919
ENSGACG00000001725	zgc:101559	70	39.053	ENSGACG00000009647	RAB7A	79	39.053
ENSGACG00000001725	zgc:101559	63	44.218	ENSGACG00000007722	rab15	87	44.218
ENSGACG00000001725	zgc:101559	73	45.562	ENSGACG00000013401	zgc:171927	80	46.341
ENSGACG00000001725	zgc:101559	72	45.238	ENSGACG00000019642	-	80	45.238
ENSGACG00000001725	zgc:101559	72	38.690	ENSGACG00000013249	rab25b	78	38.690
ENSGACG00000001725	zgc:101559	76	30.899	ENSGACG00000004844	rras	88	30.899
ENSGACG00000001725	zgc:101559	74	34.682	ENSGACG00000007818	si:ch73-116o1.2	92	32.821
ENSGACG00000001725	zgc:101559	51	30.252	ENSGACG00000003710	arl4d	60	30.252
ENSGACG00000001725	zgc:101559	52	32.787	ENSGACG00000015645	rras2	92	31.690
ENSGACG00000001725	zgc:101559	70	35.802	ENSGACG00000004965	rab25a	77	35.802
ENSGACG00000001725	zgc:101559	74	38.728	ENSGACG00000015479	rab11bb	78	38.728
ENSGACG00000001725	zgc:101559	77	45.251	ENSGACG00000014915	si:dkey-16l2.16	88	43.005
ENSGACG00000001725	zgc:101559	74	38.150	ENSGACG00000013297	-	78	38.150
ENSGACG00000001725	zgc:101559	85	37.374	ENSGACG00000013721	rab6bb	93	37.374
ENSGACG00000001725	zgc:101559	64	41.667	ENSGACG00000003726	rab6ba	72	41.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000001725	zgc:101559	92	85.116	ENSAPOG00000007503	zgc:101559	92	85.116	Acanthochromis_polyacanthus
ENSGACG00000001725	zgc:101559	93	82.028	ENSACIG00000021459	zgc:101559	95	82.028	Amphilophus_citrinellus
ENSGACG00000001725	zgc:101559	92	86.512	ENSAOCG00000024675	zgc:101559	92	86.512	Amphiprion_ocellaris
ENSGACG00000001725	zgc:101559	92	86.512	ENSAPEG00000005176	zgc:101559	92	86.512	Amphiprion_percula
ENSGACG00000001725	zgc:101559	94	81.193	ENSATEG00000007761	zgc:101559	93	81.193	Anabas_testudineus
ENSGACG00000001725	zgc:101559	91	85.915	ENSACLG00000027006	zgc:101559	90	85.915	Astatotilapia_calliptera
ENSGACG00000001725	zgc:101559	96	71.749	ENSAMXG00000040460	zgc:101559	91	71.749	Astyanax_mexicanus
ENSGACG00000001725	zgc:101559	94	77.064	ENSCSEG00000006243	zgc:101559	93	77.064	Cynoglossus_semilaevis
ENSGACG00000001725	zgc:101559	91	83.491	ENSCVAG00000019227	zgc:101559	91	83.491	Cyprinodon_variegatus
ENSGACG00000001725	zgc:101559	94	73.182	ENSDARG00000003257	zgc:101559	94	73.182	Danio_rerio
ENSGACG00000001725	zgc:101559	91	80.660	ENSFHEG00000011483	zgc:101559	91	80.660	Fundulus_heteroclitus
ENSGACG00000001725	zgc:101559	91	78.404	ENSGMOG00000011665	zgc:101559	100	78.404	Gadus_morhua
ENSGACG00000001725	zgc:101559	91	80.189	ENSGAFG00000021202	zgc:101559	91	80.189	Gambusia_affinis
ENSGACG00000001725	zgc:101559	91	85.915	ENSHBUG00000007827	zgc:101559	91	85.915	Haplochromis_burtoni
ENSGACG00000001725	zgc:101559	91	77.674	ENSHCOG00000009133	zgc:101559	91	78.140	Hippocampus_comes
ENSGACG00000001725	zgc:101559	91	71.362	ENSIPUG00000022394	zgc:101559	91	71.362	Ictalurus_punctatus
ENSGACG00000001725	zgc:101559	91	79.907	ENSKMAG00000002862	zgc:101559	91	79.907	Kryptolebias_marmoratus
ENSGACG00000001725	zgc:101559	91	88.263	ENSLBEG00000025798	zgc:101559	91	88.263	Labrus_bergylta
ENSGACG00000001725	zgc:101559	87	65.842	ENSLACG00000011557	zgc:101559	87	65.842	Latimeria_chalumnae
ENSGACG00000001725	zgc:101559	94	70.320	ENSLOCG00000005904	zgc:101559	93	70.320	Lepisosteus_oculatus
ENSGACG00000001725	zgc:101559	91	83.099	ENSMAMG00000017431	zgc:101559	91	83.099	Mastacembelus_armatus
ENSGACG00000001725	zgc:101559	91	85.915	ENSMZEG00005021778	zgc:101559	91	85.915	Maylandia_zebra
ENSGACG00000001725	zgc:101559	91	82.075	ENSMMOG00000019779	zgc:101559	91	82.075	Mola_mola
ENSGACG00000001725	zgc:101559	91	79.717	ENSMALG00000003712	zgc:101559	91	79.717	Monopterus_albus
ENSGACG00000001725	zgc:101559	91	85.446	ENSNBRG00000002684	zgc:101559	91	85.446	Neolamprologus_brichardi
ENSGACG00000001725	zgc:101559	91	85.915	ENSONIG00000006715	-	91	85.915	Oreochromis_niloticus
ENSGACG00000001725	zgc:101559	91	80.189	ENSORLG00000030642	zgc:101559	91	80.189	Oryzias_latipes
ENSGACG00000001725	zgc:101559	91	79.717	ENSORLG00020012685	zgc:101559	91	79.717	Oryzias_latipes_hni
ENSGACG00000001725	zgc:101559	91	80.189	ENSORLG00015016047	zgc:101559	91	80.189	Oryzias_latipes_hsok
ENSGACG00000001725	zgc:101559	91	80.660	ENSOMEG00000013128	zgc:101559	91	80.660	Oryzias_melastigma
ENSGACG00000001725	zgc:101559	80	79.032	ENSPKIG00000013397	zgc:101559	78	79.032	Paramormyrops_kingsleyae
ENSGACG00000001725	zgc:101559	91	81.132	ENSPFOG00000009101	-	91	81.132	Poecilia_formosa
ENSGACG00000001725	zgc:101559	91	81.132	ENSPLAG00000020627	zgc:101559	91	81.132	Poecilia_latipinna
ENSGACG00000001725	zgc:101559	91	81.604	ENSPMEG00000010152	zgc:101559	91	81.604	Poecilia_mexicana
ENSGACG00000001725	zgc:101559	91	81.132	ENSPREG00000007017	zgc:101559	91	81.132	Poecilia_reticulata
ENSGACG00000001725	zgc:101559	91	85.915	ENSPNYG00000012922	zgc:101559	91	85.915	Pundamilia_nyererei
ENSGACG00000001725	zgc:101559	91	75.587	ENSPNAG00000017856	zgc:101559	92	75.587	Pygocentrus_nattereri
ENSGACG00000001725	zgc:101559	91	72.170	ENSSFOG00015006175	zgc:101559	91	72.170	Scleropages_formosus
ENSGACG00000001725	zgc:101559	90	84.286	ENSSMAG00000002229	zgc:101559	89	84.286	Scophthalmus_maximus
ENSGACG00000001725	zgc:101559	91	84.434	ENSSDUG00000008151	zgc:101559	91	84.434	Seriola_dumerili
ENSGACG00000001725	zgc:101559	91	84.434	ENSSLDG00000019214	zgc:101559	91	84.434	Seriola_lalandi_dorsalis
ENSGACG00000001725	zgc:101559	92	86.512	ENSSPAG00000006404	zgc:101559	92	86.512	Stegastes_partitus
ENSGACG00000001725	zgc:101559	91	78.774	ENSTRUG00000009903	zgc:101559	91	78.774	Takifugu_rubripes
ENSGACG00000001725	zgc:101559	83	79.793	ENSTNIG00000015000	zgc:101559	83	78.680	Tetraodon_nigroviridis
ENSGACG00000001725	zgc:101559	91	80.660	ENSXCOG00000018683	zgc:101559	91	80.660	Xiphophorus_couchianus
ENSGACG00000001725	zgc:101559	91	81.132	ENSXMAG00000011171	zgc:101559	91	81.132	Xiphophorus_maculatus