EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGACG00000001972 (Gene tree)
Gene ID: -
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 2060 bases
Position: chrgroupXVI:3202295-3204354
Accession: ZDB-GENE-060721-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000002562	Smg4_UPF3	PF03467.15	3.2e-52	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000002571	-	960	-	ENSGACP00000002562	320 (aa)	-	G3NB66

Gene Model

Click here to download ENSGACG00000001972's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000001972's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGACG00000001972	upf3a	91	58.362	ENSGACG00000017435	upf3b	57	71.154

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000001972	upf3a	100	59.050	ENSG00000169062	UPF3A	70	59.347	Homo_sapiens
ENSGACG00000001972	upf3a	100	83.750	ENSAPOG00000013484	upf3a	69	83.750	Acanthochromis_polyacanthus
ENSGACG00000001972	upf3a	100	60.588	ENSAMEG00000004259	UPF3A	73	60.882	Ailuropoda_melanoleuca
ENSGACG00000001972	upf3a	100	84.062	ENSACIG00000020468	upf3a	70	95.238	Amphilophus_citrinellus
ENSGACG00000001972	upf3a	100	84.062	ENSAOCG00000020784	upf3a	69	84.062	Amphiprion_ocellaris
ENSGACG00000001972	upf3a	100	84.062	ENSAPEG00000003519	upf3a	69	84.062	Amphiprion_percula
ENSGACG00000001972	upf3a	100	82.812	ENSATEG00000005843	upf3a	69	82.812	Anabas_testudineus
ENSGACG00000001972	upf3a	99	65.075	ENSACAG00000001540	UPF3A	80	64.776	Anolis_carolinensis
ENSGACG00000001972	upf3a	100	56.418	ENSANAG00000021713	UPF3A	70	56.716	Aotus_nancymaae
ENSGACG00000001972	upf3a	100	84.375	ENSACLG00000026274	upf3a	67	84.375	Astatotilapia_calliptera
ENSGACG00000001972	upf3a	100	76.301	ENSAMXG00000002608	upf3a	70	79.688	Astyanax_mexicanus
ENSGACG00000001972	upf3a	100	63.063	ENSCAFG00000006504	UPF3A	71	62.426	Canis_familiaris
ENSGACG00000001972	upf3a	100	63.363	ENSCAFG00020014268	UPF3A	69	62.722	Canis_lupus_dingo
ENSGACG00000001972	upf3a	84	60.638	ENSTSYG00000001918	UPF3A	74	61.071	Carlito_syrichta
ENSGACG00000001972	upf3a	100	58.160	ENSCCAG00000018406	UPF3A	70	58.160	Cebus_capucinus
ENSGACG00000001972	upf3a	100	60.000	ENSCATG00000029733	UPF3A	69	61.420	Cercocebus_atys
ENSGACG00000001972	upf3a	100	59.467	ENSCSAG00000017388	UPF3A	69	59.281	Chlorocebus_sabaeus
ENSGACG00000001972	upf3a	53	47.619	ENSCING00000008396	-	86	52.555	Ciona_intestinalis
ENSGACG00000001972	upf3a	99	61.801	ENSCGRG00001017387	Upf3a	74	62.222	Cricetulus_griseus_chok1gshd
ENSGACG00000001972	upf3a	99	61.801	ENSCGRG00000001468	Upf3a	74	62.222	Cricetulus_griseus_crigri
ENSGACG00000001972	upf3a	100	81.875	ENSCSEG00000005106	upf3a	70	81.875	Cynoglossus_semilaevis
ENSGACG00000001972	upf3a	100	81.620	ENSCVAG00000022333	upf3a	69	81.620	Cyprinodon_variegatus
ENSGACG00000001972	upf3a	100	78.816	ENSDARG00000069297	upf3a	71	78.816	Danio_rerio
ENSGACG00000001972	upf3a	100	64.865	ENSDNOG00000034391	UPF3A	75	64.565	Dasypus_novemcinctus
ENSGACG00000001972	upf3a	100	54.354	ENSETEG00000010110	UPF3A	69	53.916	Echinops_telfairi
ENSGACG00000001972	upf3a	100	61.905	ENSEASG00005021884	UPF3A	69	62.048	Equus_asinus_asinus
ENSGACG00000001972	upf3a	100	62.349	ENSECAG00000017141	UPF3A	69	62.048	Equus_caballus
ENSGACG00000001972	upf3a	100	80.625	ENSELUG00000011050	upf3a	69	80.625	Esox_lucius
ENSGACG00000001972	upf3a	100	61.493	ENSFCAG00000014602	UPF3A	69	60.661	Felis_catus
ENSGACG00000001972	upf3a	100	85.061	ENSGMOG00000019615	upf3a	100	85.061	Gadus_morhua
ENSGACG00000001972	upf3a	100	81.931	ENSGAFG00000021170	upf3a	69	81.931	Gambusia_affinis
ENSGACG00000001972	upf3a	100	45.672	ENSGGOG00000041219	-	72	43.881	Gorilla_gorilla
ENSGACG00000001972	upf3a	99	45.509	ENSGGOG00000043074	-	67	43.713	Gorilla_gorilla
ENSGACG00000001972	upf3a	100	59.760	ENSGGOG00000015428	UPF3A	70	59.281	Gorilla_gorilla
ENSGACG00000001972	upf3a	100	84.375	ENSHBUG00000011325	upf3a	69	84.375	Haplochromis_burtoni
ENSGACG00000001972	upf3a	98	57.508	ENSHGLG00000001544	UPF3A	74	57.508	Heterocephalus_glaber_female
ENSGACG00000001972	upf3a	98	57.508	ENSHGLG00100013244	UPF3A	74	57.508	Heterocephalus_glaber_male
ENSGACG00000001972	upf3a	100	75.504	ENSIPUG00000023450	upf3a	70	78.505	Ictalurus_punctatus
ENSGACG00000001972	upf3a	50	71.069	ENSSTOG00000030282	-	60	76.923	Ictidomys_tridecemlineatus
ENSGACG00000001972	upf3a	100	82.243	ENSKMAG00000004381	upf3a	69	82.243	Kryptolebias_marmoratus
ENSGACG00000001972	upf3a	100	75.938	ENSLBEG00000021570	upf3a	69	75.000	Labrus_bergylta
ENSGACG00000001972	upf3a	67	38.214	ENSLACG00000006645	UPF3A	73	36.559	Latimeria_chalumnae
ENSGACG00000001972	upf3a	100	71.930	ENSLOCG00000002665	upf3a	71	74.164	Lepisosteus_oculatus
ENSGACG00000001972	upf3a	53	59.551	ENSMFAG00000045275	-	79	59.036	Macaca_fascicularis
ENSGACG00000001972	upf3a	100	59.701	ENSMFAG00000045016	UPF3A	69	60.494	Macaca_fascicularis
ENSGACG00000001972	upf3a	53	58.659	ENSMMUG00000046682	-	81	58.434	Macaca_mulatta
ENSGACG00000001972	upf3a	99	60.180	ENSMMUG00000007449	UPF3A	71	61.610	Macaca_mulatta
ENSGACG00000001972	upf3a	100	58.721	ENSMNEG00000036402	UPF3A	67	62.037	Macaca_nemestrina
ENSGACG00000001972	upf3a	53	58.989	ENSMNEG00000040898	-	79	58.434	Macaca_nemestrina
ENSGACG00000001972	upf3a	100	58.140	ENSMLEG00000014726	UPF3A	76	61.111	Mandrillus_leucophaeus
ENSGACG00000001972	upf3a	100	80.058	ENSMAMG00000018364	upf3a	67	82.812	Mastacembelus_armatus
ENSGACG00000001972	upf3a	100	84.375	ENSMZEG00005021571	upf3a	67	84.375	Maylandia_zebra
ENSGACG00000001972	upf3a	94	63.497	ENSMGAG00000014837	UPF3A	78	64.968	Meleagris_gallopavo
ENSGACG00000001972	upf3a	100	82.500	ENSMMOG00000019751	upf3a	67	82.500	Mola_mola
ENSGACG00000001972	upf3a	100	66.066	ENSMODG00000003159	UPF3A	78	66.667	Monodelphis_domestica
ENSGACG00000001972	upf3a	100	62.305	MGP_CAROLIEiJ_G0030848	Upf3a	75	61.994	Mus_caroli
ENSGACG00000001972	upf3a	100	62.617	ENSMUSG00000038398	Upf3a	76	62.617	Mus_musculus
ENSGACG00000001972	upf3a	100	63.580	MGP_PahariEiJ_G0021311	Upf3a	76	63.580	Mus_pahari
ENSGACG00000001972	upf3a	100	62.617	MGP_SPRETEiJ_G0031958	Upf3a	76	62.617	Mus_spretus
ENSGACG00000001972	upf3a	100	59.226	ENSMPUG00000009139	UPF3A	68	60.121	Mustela_putorius_furo
ENSGACG00000001972	upf3a	99	61.538	ENSMLUG00000015905	UPF3A	80	60.714	Myotis_lucifugus
ENSGACG00000001972	upf3a	100	60.241	ENSNGAG00000019314	Upf3a	76	61.371	Nannospalax_galili
ENSGACG00000001972	upf3a	100	84.062	ENSNBRG00000000828	upf3a	69	84.062	Neolamprologus_brichardi
ENSGACG00000001972	upf3a	99	58.683	ENSNLEG00000007563	UPF3A	68	59.938	Nomascus_leucogenys
ENSGACG00000001972	upf3a	53	58.580	ENSNLEG00000027516	-	74	57.962	Nomascus_leucogenys
ENSGACG00000001972	upf3a	53	58.824	ENSODEG00000006064	-	79	59.236	Octodon_degus
ENSGACG00000001972	upf3a	55	55.249	ENSODEG00000007164	-	66	55.625	Octodon_degus
ENSGACG00000001972	upf3a	100	83.282	ENSONIG00000006817	upf3a	69	83.282	Oreochromis_niloticus
ENSGACG00000001972	upf3a	99	54.310	ENSOANG00000006985	-	85	54.310	Ornithorhynchus_anatinus
ENSGACG00000001972	upf3a	100	77.168	ENSORLG00000010911	upf3a	69	79.688	Oryzias_latipes
ENSGACG00000001972	upf3a	99	76.163	ENSORLG00020014317	upf3a	69	78.438	Oryzias_latipes_hni
ENSGACG00000001972	upf3a	99	80.564	ENSOMEG00000014425	upf3a	69	80.312	Oryzias_melastigma
ENSGACG00000001972	upf3a	99	60.479	ENSOGAG00000004788	UPF3A	79	60.182	Otolemur_garnettii
ENSGACG00000001972	upf3a	100	57.637	ENSOARG00000009004	UPF3A	70	57.349	Ovis_aries
ENSGACG00000001972	upf3a	100	58.507	ENSPPAG00000042267	UPF3A	70	58.507	Pan_paniscus
ENSGACG00000001972	upf3a	100	61.194	ENSPPRG00000025062	UPF3A	69	60.360	Panthera_pardus
ENSGACG00000001972	upf3a	100	58.507	ENSPTRG00000006073	UPF3A	70	58.683	Pan_troglodytes
ENSGACG00000001972	upf3a	100	45.970	ENSPTRG00000041187	-	73	42.090	Pan_troglodytes
ENSGACG00000001972	upf3a	100	58.721	ENSPANG00000004346	UPF3A	69	61.728	Papio_anubis
ENSGACG00000001972	upf3a	53	58.989	ENSPANG00000029350	-	80	58.434	Papio_anubis
ENSGACG00000001972	upf3a	100	68.915	ENSPKIG00000004422	upf3a	73	70.948	Paramormyrops_kingsleyae
ENSGACG00000001972	upf3a	88	58.644	ENSPKIG00000019226	upf3b	67	76.923	Paramormyrops_kingsleyae
ENSGACG00000001972	upf3a	100	66.667	ENSPSIG00000007468	UPF3A	81	66.066	Pelodiscus_sinensis
ENSGACG00000001972	upf3a	99	79.688	ENSPMGG00000012696	upf3a	66	79.688	Periophthalmus_magnuspinnatus
ENSGACG00000001972	upf3a	100	62.305	ENSPEMG00000019968	-	76	62.305	Peromyscus_maniculatus_bairdii
ENSGACG00000001972	upf3a	77	76.216	ENSPCIG00000019590	-	62	81.818	Phascolarctos_cinereus
ENSGACG00000001972	upf3a	100	83.125	ENSPFOG00000013222	upf3a	69	83.125	Poecilia_formosa
ENSGACG00000001972	upf3a	100	81.620	ENSPLAG00000011960	upf3a	70	81.620	Poecilia_latipinna
ENSGACG00000001972	upf3a	100	82.555	ENSPMEG00000000836	upf3a	66	82.555	Poecilia_mexicana
ENSGACG00000001972	upf3a	100	58.507	ENSPPYG00000005536	UPF3A	70	58.806	Pongo_abelii
ENSGACG00000001972	upf3a	99	59.763	ENSPVAG00000005656	UPF3A	69	59.172	Pteropus_vampyrus
ENSGACG00000001972	upf3a	100	84.375	ENSPNYG00000011289	upf3a	67	84.375	Pundamilia_nyererei
ENSGACG00000001972	upf3a	85	59.649	ENSPNAG00000021528	upf3b	52	73.077	Pygocentrus_nattereri
ENSGACG00000001972	upf3a	100	76.301	ENSPNAG00000019532	upf3a	70	79.688	Pygocentrus_nattereri
ENSGACG00000001972	upf3a	100	61.994	ENSRNOG00000017397	Upf3a	78	62.776	Rattus_norvegicus
ENSGACG00000001972	upf3a	99	60.681	ENSRBIG00000034007	UPF3A	73	60.681	Rhinopithecus_bieti
ENSGACG00000001972	upf3a	99	59.880	ENSRROG00000012212	UPF3A	68	61.059	Rhinopithecus_roxellana
ENSGACG00000001972	upf3a	88	56.333	ENSSBOG00000029989	UPF3A	67	56.000	Saimiri_boliviensis_boliviensis
ENSGACG00000001972	upf3a	100	64.638	ENSSHAG00000009895	UPF3A	79	66.366	Sarcophilus_harrisii
ENSGACG00000001972	upf3a	100	75.701	ENSSFOG00015021851	upf3a	69	76.012	Scleropages_formosus
ENSGACG00000001972	upf3a	88	59.364	ENSSMAG00000012913	upf3b	51	72.436	Scophthalmus_maximus
ENSGACG00000001972	upf3a	50	94.410	ENSSMAG00000003858	upf3a	72	91.589	Scophthalmus_maximus
ENSGACG00000001972	upf3a	100	83.750	ENSSDUG00000009680	upf3a	63	94.118	Seriola_dumerili
ENSGACG00000001972	upf3a	100	83.750	ENSSLDG00000009700	upf3a	69	83.750	Seriola_lalandi_dorsalis
ENSGACG00000001972	upf3a	99	49.133	ENSSARG00000007262	UPF3A	80	49.096	Sorex_araneus
ENSGACG00000001972	upf3a	50	96.273	ENSSPAG00000007938	upf3a	74	96.273	Stegastes_partitus
ENSGACG00000001972	upf3a	100	60.060	ENSSSCG00000024679	UPF3A	67	59.459	Sus_scrofa
ENSGACG00000001972	upf3a	100	66.667	ENSTGUG00000009493	UPF3A	84	66.066	Taeniopygia_guttata
ENSGACG00000001972	upf3a	100	75.072	ENSTRUG00000012730	upf3a	70	77.812	Takifugu_rubripes
ENSGACG00000001972	upf3a	100	62.994	ENSTNIG00000014973	upf3a	82	64.634	Tetraodon_nigroviridis
ENSGACG00000001972	upf3a	88	47.020	ENSTBEG00000017186	-	93	44.951	Tupaia_belangeri
ENSGACG00000001972	upf3a	88	56.419	ENSTTRG00000015414	UPF3A	62	55.405	Tursiops_truncatus
ENSGACG00000001972	upf3a	99	58.580	ENSVPAG00000003525	UPF3A	82	58.912	Vicugna_pacos
ENSGACG00000001972	upf3a	100	61.862	ENSVVUG00000013538	UPF3A	67	61.243	Vulpes_vulpes
ENSGACG00000001972	upf3a	51	68.902	ENSXETG00000007440	upf3b	68	71.795	Xenopus_tropicalis
ENSGACG00000001972	upf3a	100	52.991	ENSXETG00000002572	upf3a	77	50.000	Xenopus_tropicalis
ENSGACG00000001972	upf3a	100	82.243	ENSXMAG00000013452	upf3a	69	82.243	Xiphophorus_maculatus