EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGACG00000002048 (Gene tree)
Gene ID: -
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA-binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Gasterosteus_aculeatus
Status: putative
Strand: Plus strand
Length: 9873 bases
Position: chrgroupXXI:2362051-2371923
Accession: ZDB-GENE-060312-35
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGACP00000002662	RRM_1	PF00076.22	6.9e-17	1	2
ENSGACP00000002662	RRM_1	PF00076.22	6.9e-17	2	2
ENSGACP00000002664	RRM_1	PF00076.22	6.9e-17	1	2
ENSGACP00000002664	RRM_1	PF00076.22	6.9e-17	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGACT00000002671	-	1724	-	ENSGACP00000002662	516 (aa)	-	G3NBG5
ENSGACT00000002673	-	1896	-	ENSGACP00000002664	517 (aa)	-	G3NBG7

Gene Model

Click here to download ENSGACG00000002048's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000002048's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGACG00000002048	rnpc3	96	55.268	ENSG00000185946	RNPC3	100	54.348	Homo_sapiens
ENSGACG00000002048	rnpc3	98	83.366	ENSAPOG00000017371	rnpc3	100	82.178	Acanthochromis_polyacanthus
ENSGACG00000002048	rnpc3	96	54.672	ENSAMEG00000001694	RNPC3	94	55.081	Ailuropoda_melanoleuca
ENSGACG00000002048	rnpc3	99	75.486	ENSACIG00000021043	rnpc3	99	75.097	Amphilophus_citrinellus
ENSGACG00000002048	rnpc3	100	81.977	ENSAOCG00000014052	rnpc3	98	81.008	Amphiprion_ocellaris
ENSGACG00000002048	rnpc3	100	81.783	ENSAPEG00000008739	rnpc3	98	80.814	Amphiprion_percula
ENSGACG00000002048	rnpc3	99	79.808	ENSATEG00000021263	rnpc3	100	78.530	Anabas_testudineus
ENSGACG00000002048	rnpc3	89	54.644	ENSAPLG00000015605	RNPC3	99	55.629	Anas_platyrhynchos
ENSGACG00000002048	rnpc3	95	53.737	ENSACAG00000002029	RNPC3	96	54.141	Anolis_carolinensis
ENSGACG00000002048	rnpc3	96	54.960	ENSANAG00000019950	RNPC3	95	54.600	Aotus_nancymaae
ENSGACG00000002048	rnpc3	99	80.078	ENSACLG00000014702	rnpc3	100	80.512	Astatotilapia_calliptera
ENSGACG00000002048	rnpc3	99	64.479	ENSAMXG00000033372	rnpc3	99	64.370	Astyanax_mexicanus
ENSGACG00000002048	rnpc3	96	54.871	ENSBTAG00000019091	RNPC3	95	54.509	Bos_taurus
ENSGACG00000002048	rnpc3	96	54.800	ENSCJAG00000035686	RNPC3	94	55.306	Callithrix_jacchus
ENSGACG00000002048	rnpc3	96	54.781	ENSCAFG00000019972	RNPC3	94	54.990	Canis_familiaris
ENSGACG00000002048	rnpc3	96	54.781	ENSCAFG00020011300	RNPC3	94	54.990	Canis_lupus_dingo
ENSGACG00000002048	rnpc3	96	55.446	ENSCHIG00000020361	RNPC3	95	54.400	Capra_hircus
ENSGACG00000002048	rnpc3	96	53.877	ENSTSYG00000030256	RNPC3	95	54.601	Carlito_syrichta
ENSGACG00000002048	rnpc3	86	46.239	ENSCAPG00000013600	RNPC3	97	46.774	Cavia_aperea
ENSGACG00000002048	rnpc3	96	53.755	ENSCPOG00000031638	RNPC3	95	54.490	Cavia_porcellus
ENSGACG00000002048	rnpc3	96	54.762	ENSCCAG00000024301	RNPC3	95	55.306	Cebus_capucinus
ENSGACG00000002048	rnpc3	96	55.159	ENSCATG00000002086	RNPC3	94	55.000	Cercocebus_atys
ENSGACG00000002048	rnpc3	97	43.141	ENSCATG00000035930	-	52	51.240	Cercocebus_atys
ENSGACG00000002048	rnpc3	96	53.678	ENSCLAG00000005169	RNPC3	95	53.579	Chinchilla_lanigera
ENSGACG00000002048	rnpc3	96	54.960	ENSCSAG00000001519	RNPC3	94	55.000	Chlorocebus_sabaeus
ENSGACG00000002048	rnpc3	97	55.754	ENSCPBG00000028311	RNPC3	95	56.680	Chrysemys_picta_bellii
ENSGACG00000002048	rnpc3	92	35.000	ENSCSAVG00000002800	-	76	53.077	Ciona_savignyi
ENSGACG00000002048	rnpc3	96	55.159	ENSCANG00000031444	RNPC3	94	54.600	Colobus_angolensis_palliatus
ENSGACG00000002048	rnpc3	96	53.725	ENSCGRG00001019276	Rnpc3	95	55.193	Cricetulus_griseus_chok1gshd
ENSGACG00000002048	rnpc3	89	51.695	ENSCGRG00000000053	Rnpc3	99	53.201	Cricetulus_griseus_crigri
ENSGACG00000002048	rnpc3	99	73.735	ENSCSEG00000013475	rnpc3	99	75.198	Cynoglossus_semilaevis
ENSGACG00000002048	rnpc3	99	79.304	ENSCVAG00000002645	rnpc3	100	79.110	Cyprinodon_variegatus
ENSGACG00000002048	rnpc3	99	64.591	ENSDARG00000011247	rnpc3	99	62.718	Danio_rerio
ENSGACG00000002048	rnpc3	96	53.877	ENSDNOG00000044555	-	95	54.490	Dasypus_novemcinctus
ENSGACG00000002048	rnpc3	96	54.076	ENSDNOG00000047498	-	95	54.694	Dasypus_novemcinctus
ENSGACG00000002048	rnpc3	96	54.582	ENSDORG00000027343	Rnpc3	95	55.397	Dipodomys_ordii
ENSGACG00000002048	rnpc3	99	48.399	ENSEBUG00000002068	rnpc3	99	48.752	Eptatretus_burgeri
ENSGACG00000002048	rnpc3	96	54.600	ENSEASG00005015957	RNPC3	94	55.306	Equus_asinus_asinus
ENSGACG00000002048	rnpc3	96	54.563	ENSECAG00000021148	RNPC3	94	54.400	Equus_caballus
ENSGACG00000002048	rnpc3	99	67.816	ENSELUG00000002264	rnpc3	99	64.875	Esox_lucius
ENSGACG00000002048	rnpc3	96	55.070	ENSFCAG00000024312	RNPC3	94	54.762	Felis_catus
ENSGACG00000002048	rnpc3	89	55.940	ENSFALG00000002580	RNPC3	99	56.954	Ficedula_albicollis
ENSGACG00000002048	rnpc3	96	54.365	ENSFDAG00000019948	RNPC3	95	54.898	Fukomys_damarensis
ENSGACG00000002048	rnpc3	98	70.751	ENSFHEG00000020647	rnpc3	100	71.089	Fundulus_heteroclitus
ENSGACG00000002048	rnpc3	100	67.500	ENSGMOG00000019213	rnpc3	99	67.319	Gadus_morhua
ENSGACG00000002048	rnpc3	96	55.888	ENSGALG00000005162	RNPC3	88	56.275	Gallus_gallus
ENSGACG00000002048	rnpc3	99	75.534	ENSGAFG00000017236	rnpc3	100	75.728	Gambusia_affinis
ENSGACG00000002048	rnpc3	97	56.548	ENSGAGG00000008438	RNPC3	94	57.287	Gopherus_agassizii
ENSGACG00000002048	rnpc3	96	48.185	ENSGGOG00000026201	-	95	48.276	Gorilla_gorilla
ENSGACG00000002048	rnpc3	82	81.250	ENSHBUG00000015966	rnpc3	85	81.250	Haplochromis_burtoni
ENSGACG00000002048	rnpc3	96	53.968	ENSHGLG00000001708	RNPC3	95	54.286	Heterocephalus_glaber_female
ENSGACG00000002048	rnpc3	96	53.968	ENSHGLG00100003005	RNPC3	95	54.286	Heterocephalus_glaber_male
ENSGACG00000002048	rnpc3	99	73.294	ENSHCOG00000017135	rnpc3	99	73.757	Hippocampus_comes
ENSGACG00000002048	rnpc3	99	63.035	ENSIPUG00000002916	rnpc3	99	63.889	Ictalurus_punctatus
ENSGACG00000002048	rnpc3	96	54.365	ENSSTOG00000025020	RNPC3	95	55.102	Ictidomys_tridecemlineatus
ENSGACG00000002048	rnpc3	96	54.473	ENSJJAG00000010203	Rnpc3	95	55.010	Jaculus_jaculus
ENSGACG00000002048	rnpc3	99	77.734	ENSKMAG00000017358	rnpc3	99	78.685	Kryptolebias_marmoratus
ENSGACG00000002048	rnpc3	100	81.783	ENSLBEG00000024901	rnpc3	99	81.765	Labrus_bergylta
ENSGACG00000002048	rnpc3	99	56.178	ENSLACG00000005720	RNPC3	92	56.016	Latimeria_chalumnae
ENSGACG00000002048	rnpc3	99	61.942	ENSLOCG00000007986	rnpc3	99	62.028	Lepisosteus_oculatus
ENSGACG00000002048	rnpc3	96	55.578	ENSLAFG00000032342	RNPC3	95	55.510	Loxodonta_africana
ENSGACG00000002048	rnpc3	97	41.948	ENSMFAG00000002917	-	94	41.633	Macaca_fascicularis
ENSGACG00000002048	rnpc3	96	55.159	ENSMFAG00000002004	RNPC3	94	55.000	Macaca_fascicularis
ENSGACG00000002048	rnpc3	96	54.960	ENSMMUG00000018039	RNPC3	94	54.800	Macaca_mulatta
ENSGACG00000002048	rnpc3	78	53.271	ENSMMUG00000002098	-	85	53.271	Macaca_mulatta
ENSGACG00000002048	rnpc3	95	41.057	ENSMNEG00000029209	-	94	41.478	Macaca_nemestrina
ENSGACG00000002048	rnpc3	96	52.381	ENSMNEG00000033950	RNPC3	94	52.200	Macaca_nemestrina
ENSGACG00000002048	rnpc3	97	41.748	ENSMLEG00000034644	-	77	48.556	Mandrillus_leucophaeus
ENSGACG00000002048	rnpc3	96	55.159	ENSMLEG00000033628	RNPC3	94	55.000	Mandrillus_leucophaeus
ENSGACG00000002048	rnpc3	99	71.845	ENSMAMG00000007496	rnpc3	100	71.650	Mastacembelus_armatus
ENSGACG00000002048	rnpc3	99	80.426	ENSMZEG00005020233	rnpc3	99	80.077	Maylandia_zebra
ENSGACG00000002048	rnpc3	89	55.508	ENSMGAG00000006381	RNPC3	99	56.264	Meleagris_gallopavo
ENSGACG00000002048	rnpc3	96	54.819	ENSMAUG00000001358	Rnpc3	95	55.533	Mesocricetus_auratus
ENSGACG00000002048	rnpc3	96	54.563	ENSMICG00000029591	RNPC3	95	54.990	Microcebus_murinus
ENSGACG00000002048	rnpc3	96	54.691	ENSMOCG00000013423	Rnpc3	94	55.397	Microtus_ochrogaster
ENSGACG00000002048	rnpc3	98	73.913	ENSMMOG00000005309	rnpc3	100	74.308	Mola_mola
ENSGACG00000002048	rnpc3	97	54.403	ENSMODG00000002946	RNPC3	95	55.668	Monodelphis_domestica
ENSGACG00000002048	rnpc3	99	75.049	ENSMALG00000015471	rnpc3	100	74.854	Monopterus_albus
ENSGACG00000002048	rnpc3	96	55.289	MGP_CAROLIEiJ_G0025555	Rnpc3	96	55.397	Mus_caroli
ENSGACG00000002048	rnpc3	96	54.871	ENSMUSG00000027981	Rnpc3	99	53.348	Mus_musculus
ENSGACG00000002048	rnpc3	96	54.672	MGP_PahariEiJ_G0027001	Rnpc3	96	55.010	Mus_pahari
ENSGACG00000002048	rnpc3	96	51.830	MGP_SPRETEiJ_G0026505	Rnpc3	96	55.010	Mus_spretus
ENSGACG00000002048	rnpc3	96	54.314	ENSMPUG00000007349	RNPC3	94	55.215	Mustela_putorius_furo
ENSGACG00000002048	rnpc3	95	55.131	ENSMLUG00000028743	RNPC3	94	55.258	Myotis_lucifugus
ENSGACG00000002048	rnpc3	96	54.382	ENSNGAG00000010939	Rnpc3	95	54.286	Nannospalax_galili
ENSGACG00000002048	rnpc3	99	80.273	ENSNBRG00000012196	rnpc3	97	80.588	Neolamprologus_brichardi
ENSGACG00000002048	rnpc3	96	55.268	ENSNLEG00000012013	RNPC3	95	55.110	Nomascus_leucogenys
ENSGACG00000002048	rnpc3	96	52.692	ENSODEG00000007612	RNPC3	95	54.806	Octodon_degus
ENSGACG00000002048	rnpc3	99	80.156	ENSONIG00000004770	rnpc3	100	81.391	Oreochromis_niloticus
ENSGACG00000002048	rnpc3	91	55.368	ENSOANG00000008220	RNPC3	99	56.129	Ornithorhynchus_anatinus
ENSGACG00000002048	rnpc3	96	54.207	ENSOCUG00000004016	RNPC3	95	54.694	Oryctolagus_cuniculus
ENSGACG00000002048	rnpc3	98	75.050	ENSORLG00000005694	rnpc3	100	74.257	Oryzias_latipes
ENSGACG00000002048	rnpc3	98	75.644	ENSORLG00020005513	rnpc3	100	75.050	Oryzias_latipes_hni
ENSGACG00000002048	rnpc3	98	75.644	ENSORLG00015002179	rnpc3	100	74.851	Oryzias_latipes_hsok
ENSGACG00000002048	rnpc3	99	74.563	ENSOMEG00000017737	rnpc3	100	74.455	Oryzias_melastigma
ENSGACG00000002048	rnpc3	96	54.762	ENSOGAG00000026182	RNPC3	95	54.970	Otolemur_garnettii
ENSGACG00000002048	rnpc3	96	55.446	ENSOARG00000018719	RNPC3	95	54.400	Ovis_aries
ENSGACG00000002048	rnpc3	96	55.050	ENSPPAG00000037459	RNPC3	95	54.890	Pan_paniscus
ENSGACG00000002048	rnpc3	97	48.031	ENSPPAG00000030278	-	97	49.194	Pan_paniscus
ENSGACG00000002048	rnpc3	96	55.090	ENSPPRG00000020246	RNPC3	94	54.709	Panthera_pardus
ENSGACG00000002048	rnpc3	96	55.090	ENSPTIG00000009887	RNPC3	96	54.709	Panthera_tigris_altaica
ENSGACG00000002048	rnpc3	96	47.887	ENSPTRG00000044227	-	97	48.479	Pan_troglodytes
ENSGACG00000002048	rnpc3	96	54.960	ENSPTRG00000033902	RNPC3	95	54.800	Pan_troglodytes
ENSGACG00000002048	rnpc3	97	44.163	ENSPANG00000029957	-	96	43.028	Papio_anubis
ENSGACG00000002048	rnpc3	96	55.268	ENSPANG00000012137	RNPC3	94	55.110	Papio_anubis
ENSGACG00000002048	rnpc3	97	65.278	ENSPKIG00000008828	rnpc3	97	66.000	Paramormyrops_kingsleyae
ENSGACG00000002048	rnpc3	65	51.765	ENSPSIG00000007396	RNPC3	99	52.711	Pelodiscus_sinensis
ENSGACG00000002048	rnpc3	97	65.278	ENSPMGG00000011742	rnpc3	98	64.286	Periophthalmus_magnuspinnatus
ENSGACG00000002048	rnpc3	92	51.129	ENSPEMG00000020112	Rnpc3	99	54.084	Peromyscus_maniculatus_bairdii
ENSGACG00000002048	rnpc3	94	43.774	ENSPMAG00000003778	rnpc3	51	48.540	Petromyzon_marinus
ENSGACG00000002048	rnpc3	97	55.179	ENSPCIG00000004415	-	95	56.098	Phascolarctos_cinereus
ENSGACG00000002048	rnpc3	99	76.758	ENSPFOG00000009895	rnpc3	99	76.634	Poecilia_formosa
ENSGACG00000002048	rnpc3	99	77.148	ENSPLAG00000012023	rnpc3	99	77.030	Poecilia_latipinna
ENSGACG00000002048	rnpc3	100	77.176	ENSPMEG00000003663	rnpc3	99	77.030	Poecilia_mexicana
ENSGACG00000002048	rnpc3	99	76.505	ENSPREG00000010206	rnpc3	100	76.378	Poecilia_reticulata
ENSGACG00000002048	rnpc3	81	51.300	ENSPPYG00000001102	RNPC3	93	51.074	Pongo_abelii
ENSGACG00000002048	rnpc3	99	80.078	ENSPNYG00000020603	rnpc3	100	80.512	Pundamilia_nyererei
ENSGACG00000002048	rnpc3	99	54.943	ENSPNAG00000000524	rnpc3	92	56.008	Pygocentrus_nattereri
ENSGACG00000002048	rnpc3	96	54.691	ENSRNOG00000017310	Rnpc3	95	55.215	Rattus_norvegicus
ENSGACG00000002048	rnpc3	96	51.485	ENSRBIG00000043897	RNPC3	94	51.297	Rhinopithecus_bieti
ENSGACG00000002048	rnpc3	96	55.159	ENSRROG00000032334	RNPC3	94	55.000	Rhinopithecus_roxellana
ENSGACG00000002048	rnpc3	96	55.070	ENSSBOG00000024473	RNPC3	99	52.863	Saimiri_boliviensis_boliviensis
ENSGACG00000002048	rnpc3	97	55.030	ENSSHAG00000011859	RNPC3	95	55.061	Sarcophilus_harrisii
ENSGACG00000002048	rnpc3	99	66.019	ENSSFOG00015013055	rnpc3	99	68.357	Scleropages_formosus
ENSGACG00000002048	rnpc3	99	78.420	ENSSMAG00000020346	rnpc3	100	77.071	Scophthalmus_maximus
ENSGACG00000002048	rnpc3	99	81.853	ENSSDUG00000006600	rnpc3	100	81.044	Seriola_dumerili
ENSGACG00000002048	rnpc3	99	81.853	ENSSLDG00000007979	rnpc3	100	81.044	Seriola_lalandi_dorsalis
ENSGACG00000002048	rnpc3	95	52.834	ENSSPUG00000003872	-	85	65.101	Sphenodon_punctatus
ENSGACG00000002048	rnpc3	95	55.556	ENSSPUG00000008539	-	93	55.691	Sphenodon_punctatus
ENSGACG00000002048	rnpc3	99	78.835	ENSSPAG00000005633	rnpc3	100	79.604	Stegastes_partitus
ENSGACG00000002048	rnpc3	96	53.488	ENSSSCG00000037254	RNPC3	95	55.110	Sus_scrofa
ENSGACG00000002048	rnpc3	89	56.681	ENSTGUG00000004795	-	99	54.626	Taeniopygia_guttata
ENSGACG00000002048	rnpc3	99	75.728	ENSTNIG00000018963	rnpc3	99	77.228	Tetraodon_nigroviridis
ENSGACG00000002048	rnpc3	96	54.582	ENSUMAG00000007775	RNPC3	96	55.306	Ursus_maritimus
ENSGACG00000002048	rnpc3	96	54.781	ENSVVUG00000000331	RNPC3	94	54.990	Vulpes_vulpes
ENSGACG00000002048	rnpc3	96	44.246	ENSXETG00000025027	rnpc3	96	43.200	Xenopus_tropicalis
ENSGACG00000002048	rnpc3	54	75.090	ENSXCOG00000005013	rnpc3	100	75.292	Xiphophorus_couchianus
ENSGACG00000002048	rnpc3	99	75.922	ENSXMAG00000006495	rnpc3	100	76.117	Xiphophorus_maculatus