EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSGACG00000002167 (Gene tree)
Gene ID
-
Gene Symbol
pabpn1
Alias
fb19c03|wu:fb17e03|wu:fb18c06|wu:fb19c03|zgc:85979|zgc:92452
Full Name
poly(A) binding protein%2C nuclear 1
Gene Type
protein_coding
Species
Gasterosteus_aculeatus
Status
putative
Strand
Minus strand
Length
10576 bases
Position
chrgroupXXI:3047595-3058170
Accession
ZDB-GENE-040426-2401
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSGACP00000002822RRM_1PF00076.222e-1711
ENSGACP00000002827RRM_1PF00076.222.6e-1711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSGACT00000002832-1059-ENSGACP00000002822247 (aa)-G3NBX4
ENSGACT00000002837-1589-ENSGACP00000002827282 (aa)-G3NBX9
Gene Model
Click here to download ENSGACG00000002167's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSGACG00000002167's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSGACG00000002167pabpn15961.842ENSGACG00000015428PABPN1L7154.315
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSGACG00000002167pabpn19969.796ENSG00000258643BCL2L2-PABPN17069.796Homo_sapiens
ENSGACG00000002167pabpn18777.982ENSG00000100836PABPN19775.532Homo_sapiens
ENSGACG00000002167pabpn110097.887ENSAPOG00000016425pabpn110097.887Acanthochromis_polyacanthus
ENSGACG00000002167pabpn18279.703ENSAMEG00000007048BCL2L2-PABPN110079.703Ailuropoda_melanoleuca
ENSGACG00000002167pabpn110095.804ENSACIG00000021744pabpn110095.804Amphilophus_citrinellus
ENSGACG00000002167pabpn110092.308ENSAOCG00000015805pabpn19597.727Amphiprion_ocellaris
ENSGACG00000002167pabpn110092.308ENSAPEG00000009623pabpn19597.727Amphiprion_percula
ENSGACG00000002167pabpn110092.713ENSATEG00000020531pabpn19598.182Anabas_testudineus
ENSGACG00000002167pabpn18281.683ENSACAG00000006185-8170.732Anolis_carolinensis
ENSGACG00000002167pabpn19966.279ENSANAG00000024513-8471.713Aotus_nancymaae
ENSGACG00000002167pabpn110095.470ENSACLG00000016374pabpn110095.470Astatotilapia_calliptera
ENSGACG00000002167pabpn110090.688ENSAMXG00000000452pabpn110090.688Astyanax_mexicanus
ENSGACG00000002167pabpn18579.524ENSBTAG00000006884PABPN18666.667Bos_taurus
ENSGACG00000002167pabpn16490.506ENSBTAG00000050594-7083.152Bos_taurus
ENSGACG00000002167pabpn18378.431ENSBTAG00000053753-7178.431Bos_taurus
ENSGACG00000002167pabpn16554.658WBGene00003904pabp-28654.545Caenorhabditis_elegans
ENSGACG00000002167pabpn17375.556ENSCJAG00000004407-8475.556Callithrix_jacchus
ENSGACG00000002167pabpn19972.653ENSCJAG00000007960-8473.061Callithrix_jacchus
ENSGACG00000002167pabpn18777.982ENSCAFG00000011482PABPN18668.116Canis_familiaris
ENSGACG00000002167pabpn18777.982ENSCAFG00020007298-8667.754Canis_lupus_dingo
ENSGACG00000002167pabpn18777.982ENSCAFG00020006651-8667.754Canis_lupus_dingo
ENSGACG00000002167pabpn18777.982ENSCHIG00000012184PABPN18667.754Capra_hircus
ENSGACG00000002167pabpn19969.796ENSTSYG00000033996BCL2L2-PABPN19477.222Carlito_syrichta
ENSGACG00000002167pabpn16176.000ENSCAPG00000009461-9979.856Cavia_aperea
ENSGACG00000002167pabpn19076.126ENSCPOG00000025574PABPN16877.376Cavia_porcellus
ENSGACG00000002167pabpn19972.653ENSCCAG00000033954BCL2L2-PABPN18473.061Cebus_capucinus
ENSGACG00000002167pabpn19972.653ENSCATG00000038536BCL2L2-PABPN18473.061Cercocebus_atys
ENSGACG00000002167pabpn16676.543ENSCLAG00000012423PABPN15676.543Chinchilla_lanigera
ENSGACG00000002167pabpn18776.606ENSCSAG00000016036PABPN18666.667Chlorocebus_sabaeus
ENSGACG00000002167pabpn19069.369ENSCHOG00000004798BCL2L2-PABPN19267.672Choloepus_hoffmanni
ENSGACG00000002167pabpn17380.000ENSCPBG00000026060-9480.000Chrysemys_picta_bellii
ENSGACG00000002167pabpn19058.667ENSCING00000012468-7768.750Ciona_intestinalis
ENSGACG00000002167pabpn17758.549ENSCSAVG00000002001-7770.992Ciona_savignyi
ENSGACG00000002167pabpn18567.619ENSCANG00000030980-8760.317Colobus_angolensis_palliatus
ENSGACG00000002167pabpn19969.796ENSCANG00000009750BCL2L2-PABPN19477.222Colobus_angolensis_palliatus
ENSGACG00000002167pabpn19076.126ENSCGRG00001019696Pabpn19476.667Cricetulus_griseus_chok1gshd
ENSGACG00000002167pabpn16091.216ENSCGRG00000011102Pabpn19191.216Cricetulus_griseus_crigri
ENSGACG00000002167pabpn110091.093ENSCSEG00000008774pabpn19794.595Cynoglossus_semilaevis
ENSGACG00000002167pabpn110092.517ENSCVAG00000003152pabpn110092.517Cyprinodon_variegatus
ENSGACG00000002167pabpn18251.980ENSDARG00000087996pabpn1l7267.521Danio_rerio
ENSGACG00000002167pabpn110095.070ENSDARG00000045373pabpn110096.313Danio_rerio
ENSGACG00000002167pabpn18777.982ENSDNOG00000023682PABPN18667.754Dasypus_novemcinctus
ENSGACG00000002167pabpn15482.836ENSDORG00000023928-8582.114Dipodomys_ordii
ENSGACG00000002167pabpn19075.676ENSDORG00000028966-8666.667Dipodomys_ordii
ENSGACG00000002167pabpn110054.365FBgn0005648Pabp210054.894Drosophila_melanogaster
ENSGACG00000002167pabpn19969.106ENSEBUG00000002322pabpn19968.699Eptatretus_burgeri
ENSGACG00000002167pabpn18777.982ENSEASG00005011716PABPN18667.754Equus_asinus_asinus
ENSGACG00000002167pabpn18677.315ENSECAG00000011652PABPN18568.775Equus_caballus
ENSGACG00000002167pabpn18775.688ENSEEUG00000012973-6976.355Erinaceus_europaeus
ENSGACG00000002167pabpn110089.243ENSELUG00000022654pabpn110089.243Esox_lucius
ENSGACG00000002167pabpn18777.982ENSFCAG00000031922PABPN18667.754Felis_catus
ENSGACG00000002167pabpn17377.222ENSFDAG00000018381BCL2L2-PABPN19477.222Fukomys_damarensis
ENSGACG00000002167pabpn110088.664ENSFHEG00000007215pabpn110088.664Fundulus_heteroclitus
ENSGACG00000002167pabpn110092.281ENSGMOG00000003922pabpn110093.684Gadus_morhua
ENSGACG00000002167pabpn18482.212ENSGALG00000052930-6180.995Gallus_gallus
ENSGACG00000002167pabpn110092.308ENSGAFG00000017099pabpn110092.308Gambusia_affinis
ENSGACG00000002167pabpn19972.653ENSGGOG00000022683-8473.061Gorilla_gorilla
ENSGACG00000002167pabpn18965.315ENSGGOG00000039675-9162.205Gorilla_gorilla
ENSGACG00000002167pabpn19463.008ENSGGOG00000025919-9864.375Gorilla_gorilla
ENSGACG00000002167pabpn110091.903ENSHBUG00000019523pabpn19597.273Haplochromis_burtoni
ENSGACG00000002167pabpn19076.126ENSHGLG00000002927-9291.216Heterocephalus_glaber_female
ENSGACG00000002167pabpn18866.364ENSHGLG00000018588-6971.795Heterocephalus_glaber_female
ENSGACG00000002167pabpn17359.444ENSHGLG00000009842-9357.222Heterocephalus_glaber_female
ENSGACG00000002167pabpn18866.364ENSHGLG00100015565-8663.559Heterocephalus_glaber_male
ENSGACG00000002167pabpn17365.405ENSHGLG00100018935-9469.444Heterocephalus_glaber_male
ENSGACG00000002167pabpn19468.670ENSHGLG00100006673-9291.216Heterocephalus_glaber_male
ENSGACG00000002167pabpn110090.688ENSHCOG00000004655pabpn19596.818Hippocampus_comes
ENSGACG00000002167pabpn110083.401ENSIPUG00000000180-9984.848Ictalurus_punctatus
ENSGACG00000002167pabpn110091.093ENSIPUG00000008085PABPN19596.364Ictalurus_punctatus
ENSGACG00000002167pabpn17377.222ENSSTOG00000029847BCL2L2-PABPN19477.222Ictidomys_tridecemlineatus
ENSGACG00000002167pabpn17377.222ENSJJAG00000023507Gm205219477.222Jaculus_jaculus
ENSGACG00000002167pabpn110096.140ENSKMAG00000018748pabpn110096.140Kryptolebias_marmoratus
ENSGACG00000002167pabpn110098.592ENSLBEG00000027266pabpn110098.592Labrus_bergylta
ENSGACG00000002167pabpn17779.058ENSLACG00000000646pabpn18584.021Latimeria_chalumnae
ENSGACG00000002167pabpn110092.982ENSLOCG00000000796pabpn110091.579Lepisosteus_oculatus
ENSGACG00000002167pabpn19163.158ENSLOCG00000004694pabpn1l9963.755Lepisosteus_oculatus
ENSGACG00000002167pabpn16677.160ENSLAFG00000031227-9977.160Loxodonta_africana
ENSGACG00000002167pabpn16269.935ENSMFAG00000031355-9969.281Macaca_fascicularis
ENSGACG00000002167pabpn19969.796ENSMFAG00000032183BCL2L2-PABPN19477.222Macaca_fascicularis
ENSGACG00000002167pabpn18565.714ENSMMUG00000048382-8955.634Macaca_mulatta
ENSGACG00000002167pabpn19969.796ENSMMUG00000014747BCL2L2-PABPN110076.582Macaca_mulatta
ENSGACG00000002167pabpn18165.327ENSMNEG00000035750-9969.281Macaca_nemestrina
ENSGACG00000002167pabpn19972.653ENSMNEG00000045065BCL2L2-PABPN18473.061Macaca_nemestrina
ENSGACG00000002167pabpn17361.326ENSMLEG00000034623-9967.320Mandrillus_leucophaeus
ENSGACG00000002167pabpn19969.796ENSMLEG00000043862BCL2L2-PABPN19477.222Mandrillus_leucophaeus
ENSGACG00000002167pabpn110097.183ENSMAMG00000007979pabpn110097.183Mastacembelus_armatus
ENSGACG00000002167pabpn110097.183ENSMZEG00005011904pabpn110097.183Maylandia_zebra
ENSGACG00000002167pabpn19969.796ENSMAUG00000007383Gm205218767.518Mesocricetus_auratus
ENSGACG00000002167pabpn19973.171ENSMICG00000010002BCL2L2-PABPN18473.387Microcebus_murinus
ENSGACG00000002167pabpn19969.388ENSMOCG00000018557Gm205219091.216Microtus_ochrogaster
ENSGACG00000002167pabpn110097.535ENSMMOG00000005405pabpn110097.535Mola_mola
ENSGACG00000002167pabpn18674.884ENSMODG00000004535-8268.254Monodelphis_domestica
ENSGACG00000002167pabpn110097.535ENSMALG00000019612pabpn110097.535Monopterus_albus
ENSGACG00000002167pabpn19968.980MGP_CAROLIEiJ_G0019276Gm205217068.980Mus_caroli
ENSGACG00000002167pabpn19075.225MGP_CAROLIEiJ_G0019277Pabpn19090.541Mus_caroli
ENSGACG00000002167pabpn19969.388ENSMUSG00000092232Gm205217069.388Mus_musculus
ENSGACG00000002167pabpn19075.676ENSMUSG00000022194Pabpn19090.541Mus_musculus
ENSGACG00000002167pabpn19969.388MGP_PahariEiJ_G0030294Gm205217069.388Mus_pahari
ENSGACG00000002167pabpn19075.676MGP_PahariEiJ_G0030295Pabpn110095.238Mus_pahari
ENSGACG00000002167pabpn19075.676MGP_SPRETEiJ_G0020166Pabpn19090.541Mus_spretus
ENSGACG00000002167pabpn19969.388MGP_SPRETEiJ_G0020165Gm205217069.388Mus_spretus
ENSGACG00000002167pabpn16876.786ENSMPUG00000006775-9280.128Mustela_putorius_furo
ENSGACG00000002167pabpn18875.676ENSMLUG00000012452-8268.182Myotis_lucifugus
ENSGACG00000002167pabpn18278.713ENSMLUG00000003800-10078.713Myotis_lucifugus
ENSGACG00000002167pabpn18577.143ENSMLUG00000028677-8570.161Myotis_lucifugus
ENSGACG00000002167pabpn19970.204ENSNGAG00000019529Gm205217070.204Nannospalax_galili
ENSGACG00000002167pabpn110097.535ENSNBRG00000023955pabpn110097.535Neolamprologus_brichardi
ENSGACG00000002167pabpn18666.667ENSNLEG00000030598-7765.158Nomascus_leucogenys
ENSGACG00000002167pabpn16556.250ENSNLEG00000035292-9462.687Nomascus_leucogenys
ENSGACG00000002167pabpn19969.796ENSNLEG00000015007-7477.828Nomascus_leucogenys
ENSGACG00000002167pabpn19969.388ENSODEG00000002083BCL2L2-PABPN16877.376Octodon_degus
ENSGACG00000002167pabpn17768.586ENSODEG00000011555-8967.222Octodon_degus
ENSGACG00000002167pabpn19068.018ENSODEG00000003739-8859.779Octodon_degus
ENSGACG00000002167pabpn110097.535ENSONIG00000008112pabpn110097.535Oreochromis_niloticus
ENSGACG00000002167pabpn16478.481ENSOANG00000009218-10078.481Ornithorhynchus_anatinus
ENSGACG00000002167pabpn18777.523ENSOCUG00000016174PABPN19567.273Oryctolagus_cuniculus
ENSGACG00000002167pabpn110096.479ENSORLG00000027900pabpn110096.479Oryzias_latipes
ENSGACG00000002167pabpn110093.836ENSORLG00020004681pabpn110093.836Oryzias_latipes_hni
ENSGACG00000002167pabpn110093.836ENSORLG00015000018pabpn110093.836Oryzias_latipes_hsok
ENSGACG00000002167pabpn110097.183ENSOMEG00000016618pabpn110097.183Oryzias_melastigma
ENSGACG00000002167pabpn18777.982ENSOGAG00000008710PABPN18667.754Otolemur_garnettii
ENSGACG00000002167pabpn19969.796ENSOARG00000019336BCL2L2-PABPN16469.796Ovis_aries
ENSGACG00000002167pabpn19969.796ENSPPAG00000028984BCL2L2-PABPN19280.128Pan_paniscus
ENSGACG00000002167pabpn17363.333ENSPPAG00000039421-9363.333Pan_paniscus
ENSGACG00000002167pabpn18777.982ENSPPRG00000010567PABPN18667.754Panthera_pardus
ENSGACG00000002167pabpn17377.222ENSPTIG00000001063BCL2L2-PABPN19477.222Panthera_tigris_altaica
ENSGACG00000002167pabpn19972.653ENSPTRG00000006167BCL2L28473.061Pan_troglodytes
ENSGACG00000002167pabpn110060.081ENSPTRG00000047273-9357.895Pan_troglodytes
ENSGACG00000002167pabpn18565.714ENSPANG00000023326-9969.935Papio_anubis
ENSGACG00000002167pabpn19972.653ENSPANG00000021100BCL2L2-PABPN18473.061Papio_anubis
ENSGACG00000002167pabpn110095.423ENSPKIG00000008144-10095.423Paramormyrops_kingsleyae
ENSGACG00000002167pabpn110088.259ENSPKIG00000018052pabpn110089.860Paramormyrops_kingsleyae
ENSGACG00000002167pabpn16670.552ENSPKIG00000008340pabpn1l7970.370Paramormyrops_kingsleyae
ENSGACG00000002167pabpn110092.254ENSPMGG00000022027pabpn110092.254Periophthalmus_magnuspinnatus
ENSGACG00000002167pabpn19969.796ENSPEMG00000008332Gm205218991.216Peromyscus_maniculatus_bairdii
ENSGACG00000002167pabpn17575.132ENSPMAG00000006212pabpn17975.510Petromyzon_marinus
ENSGACG00000002167pabpn18775.688ENSPCIG00000027751-8667.391Phascolarctos_cinereus
ENSGACG00000002167pabpn110093.197ENSPFOG00000010351pabpn110093.197Poecilia_formosa
ENSGACG00000002167pabpn110095.804ENSPLAG00000022696pabpn110095.804Poecilia_latipinna
ENSGACG00000002167pabpn110091.903ENSPMEG00000020856pabpn110091.903Poecilia_mexicana
ENSGACG00000002167pabpn110096.154ENSPREG00000011278pabpn110096.154Poecilia_reticulata
ENSGACG00000002167pabpn18277.670ENSPPYG00000005663PABPN18968.651Pongo_abelii
ENSGACG00000002167pabpn18065.517ENSPCAG00000005902PABPN18458.400Procavia_capensis
ENSGACG00000002167pabpn19973.171ENSPCOG00000028047BCL2L2-PABPN18473.387Propithecus_coquereli
ENSGACG00000002167pabpn18876.471ENSPVAG00000005270PABPN18666.545Pteropus_vampyrus
ENSGACG00000002167pabpn110091.903ENSPNYG00000013182pabpn19597.273Pundamilia_nyererei
ENSGACG00000002167pabpn110095.070ENSPNAG00000023526pabpn19995.070Pygocentrus_nattereri
ENSGACG00000002167pabpn18958.824ENSPNAG00000021666pabpn1l8370.175Pygocentrus_nattereri
ENSGACG00000002167pabpn19076.126ENSRNOG00000042195Pabpn18567.518Rattus_norvegicus
ENSGACG00000002167pabpn18867.421ENSRBIG00000042811-9564.017Rhinopithecus_bieti
ENSGACG00000002167pabpn19067.257ENSRBIG00000039547-8262.185Rhinopithecus_bieti
ENSGACG00000002167pabpn19469.099ENSRBIG00000040762BCL2L2-PABPN16871.041Rhinopithecus_bieti
ENSGACG00000002167pabpn19469.099ENSRROG00000045535BCL2L2-PABPN19477.222Rhinopithecus_roxellana
ENSGACG00000002167pabpn18864.126ENSRROG00000036409-6863.927Rhinopithecus_roxellana
ENSGACG00000002167pabpn19462.605ENSRROG00000040409-8262.605Rhinopithecus_roxellana
ENSGACG00000002167pabpn19966.279ENSSBOG00000026930BCL2L2-PABPN19280.128Saimiri_boliviensis_boliviensis
ENSGACG00000002167pabpn18277.228ENSSHAG00000014841-8779.208Sarcophilus_harrisii
ENSGACG00000002167pabpn19959.600ENSSHAG00000007707-9461.947Sarcophilus_harrisii
ENSGACG00000002167pabpn110088.772ENSSFOG00015012565pabpn110088.772Scleropages_formosus
ENSGACG00000002167pabpn16172.848ENSSFOG00015015833pabpn1l8664.171Scleropages_formosus
ENSGACG00000002167pabpn110090.283ENSSFOG00015014718pabpn19595.455Scleropages_formosus
ENSGACG00000002167pabpn110098.239ENSSMAG00000020157pabpn110098.239Scophthalmus_maximus
ENSGACG00000002167pabpn110097.887ENSSDUG00000020582pabpn110097.887Seriola_dumerili
ENSGACG00000002167pabpn110092.713ENSSLDG00000007118pabpn19598.182Seriola_lalandi_dorsalis
ENSGACG00000002167pabpn17380.000ENSSPUG00000018308-9480.000Sphenodon_punctatus
ENSGACG00000002167pabpn110096.842ENSSPAG00000021658pabpn110096.842Stegastes_partitus
ENSGACG00000002167pabpn19359.825ENSSSCG00000034805-7955.157Sus_scrofa
ENSGACG00000002167pabpn19969.796ENSSSCG00000002023PABPN18667.754Sus_scrofa
ENSGACG00000002167pabpn110096.479ENSTRUG00000023664pabpn110096.479Takifugu_rubripes
ENSGACG00000002167pabpn19386.522ENSTNIG00000005369pabpn19396.517Tetraodon_nigroviridis
ENSGACG00000002167pabpn18777.982ENSUAMG00000024460PABPN18667.754Ursus_americanus
ENSGACG00000002167pabpn19969.796ENSUMAG00000014288BCL2L2-PABPN17069.796Ursus_maritimus
ENSGACG00000002167pabpn19969.796ENSVVUG00000019912BCL2L2-PABPN17678.641Vulpes_vulpes
ENSGACG00000002167pabpn18579.904ENSXETG00000014597pabpn16982.843Xenopus_tropicalis
ENSGACG00000002167pabpn17681.915ENSXCOG00000005158pabpn19881.915Xiphophorus_couchianus
ENSGACG00000002167pabpn110093.878ENSXMAG00000006196pabpn110093.878Xiphophorus_maculatus

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